Wall clock time and date at job start Mon Mar 30 2020 04:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46901 * 2 1 4 4 H 1.09001 * 109.15717 * 184.52961 * 3 2 1 5 5 C 1.53697 * 109.16700 * 65.32731 * 3 2 1 6 6 N 1.45636 * 107.51371 * 183.37060 * 5 3 2 7 7 C 1.46945 * 117.16496 * 180.53657 * 6 5 3 8 8 C 1.55275 * 103.40323 * 197.49665 * 7 6 5 9 9 C 1.55066 * 104.91001 * 24.07338 * 8 7 6 10 10 C 1.48865 * 108.87991 * 63.52380 * 6 5 3 11 11 H 1.08999 * 110.30715 * 52.31376 * 10 6 5 12 12 C 1.52149 * 107.25137 * 291.67405 * 10 6 5 13 13 N 1.46587 * 109.16577 * 303.78132 * 3 2 1 14 14 C 1.46898 * 111.00170 * 300.28058 * 13 3 2 15 15 C 1.53002 * 109.46968 * 164.83059 * 14 13 3 16 16 C 1.50706 * 109.47146 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99479 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00085 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00336 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46709 * 89.99624 * 20 18 16 22 22 H 1.48494 * 109.46969 * 209.99544 * 20 18 16 23 23 H 1.48501 * 109.46914 * 329.99742 * 20 18 16 24 24 H 1.08999 * 109.46821 * 64.82542 * 1 2 3 25 25 H 1.08999 * 109.47143 * 184.83531 * 1 2 3 26 26 H 1.09005 * 109.47135 * 304.83449 * 1 2 3 27 27 H 1.08996 * 109.47098 * 239.99996 * 2 1 3 28 28 H 1.08999 * 109.46980 * 119.99687 * 2 1 3 29 29 H 1.08991 * 109.85033 * 302.88067 * 5 3 2 30 30 H 1.09008 * 109.84672 * 63.80406 * 5 3 2 31 31 H 1.09002 * 110.63394 * 315.97608 * 7 6 5 32 32 H 1.09003 * 110.63039 * 79.01736 * 7 6 5 33 33 H 1.09005 * 110.34761 * 265.22365 * 8 7 6 34 34 H 1.08996 * 110.35625 * 142.93625 * 8 7 6 35 35 H 1.08996 * 110.50998 * 244.14664 * 9 8 7 36 36 H 1.09002 * 110.61978 * 121.50314 * 9 8 7 37 37 H 1.09002 * 109.87013 * 303.13691 * 12 10 6 38 38 H 1.09007 * 109.86564 * 182.09250 * 12 10 6 39 39 H 1.08996 * 109.46959 * 284.82513 * 14 13 3 40 40 H 1.08996 * 109.47579 * 44.82986 * 14 13 3 41 41 H 1.09006 * 109.46822 * 299.99529 * 15 14 13 42 42 H 1.08996 * 109.47493 * 59.99855 * 15 14 13 43 43 H 0.96991 * 120.00484 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1269 1.4377 -0.0813 5 6 1.6368 2.1203 1.3192 6 7 2.0675 3.5097 1.2477 7 6 1.7951 4.3575 2.4165 8 6 1.9425 5.7988 1.8579 9 6 1.6777 5.6658 0.3358 10 6 1.3300 4.1865 0.1458 11 1 0.2568 4.0335 0.2590 12 6 1.8237 3.5868 -1.1625 13 7 1.4745 2.1529 -1.1508 14 6 1.8628 1.5062 -2.4114 15 6 0.9731 2.0219 -3.5443 16 6 1.3710 1.3580 -4.8374 17 1 2.1779 0.6404 -4.8499 18 6 0.7055 1.6675 -6.0045 19 7 -0.2769 2.5418 -5.9894 20 14 1.1992 0.8451 -7.6075 21 1 0.4160 -0.4042 -7.7845 22 1 0.9261 1.7653 -8.7405 23 1 2.6478 0.5203 -7.5716 24 1 -0.3633 0.4371 -0.9301 25 1 -0.3633 -1.0240 0.0866 26 1 -0.3634 0.5870 0.8435 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5550 2.0740 1.4436 30 1 2.1270 1.6224 2.1560 31 1 0.7830 4.1900 2.7851 32 1 2.5269 4.1738 3.2032 33 1 2.9507 6.1731 2.0359 34 1 1.2057 6.4596 2.3146 35 1 2.5719 5.9238 -0.2314 36 1 0.8408 6.2963 0.0352 37 1 2.9047 3.7042 -1.2393 38 1 1.3360 4.0801 -2.0034 39 1 2.9044 1.7384 -2.6330 40 1 1.7430 0.4268 -2.3180 41 1 -0.0686 1.7897 -3.3226 42 1 1.0929 3.1012 -3.6378 43 1 -0.7453 2.7593 -6.8104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245413449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:55 Heat of formation + Delta-G solvation = 3.021453 kcal Electronic energy + Delta-G solvation = -19811.528847 eV Core-core repulsion = 17084.045563 eV Total energy + Delta-G solvation = -2727.483284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01565 -36.99552 -33.94880 -32.67845 -31.72665 -30.32870 -28.50713 -27.03746 -24.76273 -23.88279 -23.06034 -20.84380 -20.63548 -19.90772 -18.86604 -16.41982 -15.93363 -15.57952 -14.98892 -14.90224 -14.54595 -14.09268 -13.69904 -13.43421 -13.15608 -12.81001 -12.41971 -12.26914 -12.05381 -11.84496 -11.69665 -11.28258 -11.21759 -10.94435 -10.86069 -10.79597 -10.64866 -10.54241 -10.37159 -10.31898 -10.10427 -9.64146 -9.29193 -9.06134 -8.30582 -8.28124 -7.55850 -5.96348 -3.98335 3.34002 3.40178 3.43416 4.06296 4.32051 4.52050 4.67916 4.80528 4.99665 5.13402 5.31795 5.33619 5.39669 5.45270 5.50702 5.60214 5.62683 5.73205 5.79814 5.81002 5.89192 5.93293 6.03035 6.11378 6.13311 6.19988 6.27841 6.33060 6.44328 6.48556 6.52283 6.63399 6.83512 6.98710 7.07251 7.29249 7.60676 7.68000 7.86912 7.97432 8.13742 8.48324 9.09206 9.65180 11.15007 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.005521 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.158909 B = 5070.228635 C = 5798.231910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.037 0.963 5 C 0.063 3.937 6 N -0.532 5.532 7 C 0.044 3.956 8 C -0.119 4.119 9 C -0.116 4.116 10 C 0.065 3.935 11 H 0.058 0.942 12 C 0.075 3.925 13 N -0.540 5.540 14 C 0.062 3.938 15 C 0.031 3.969 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.023 0.977 42 H 0.015 0.985 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 2.533 16.385 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.016 4.016 4 H 0.055 0.945 5 C -0.065 4.065 6 N -0.257 5.257 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.155 4.155 10 C -0.043 4.043 11 H 0.076 0.924 12 C -0.053 4.053 13 N -0.265 5.265 14 C -0.064 4.064 15 C -0.006 4.006 16 C -0.559 4.559 17 H 0.071 0.929 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.150 2.526 16.263 16.757 hybrid contribution 0.247 -0.426 -0.805 0.944 sum 3.397 2.100 15.458 15.966 Atomic orbital electron populations 1.21669 0.95085 1.00033 1.03115 1.21602 0.97335 0.95146 1.01438 1.21529 0.96466 0.93282 0.90305 0.94484 1.22146 0.98663 0.88346 0.97371 1.63925 1.55229 1.01809 1.04751 1.22780 0.99174 0.92978 0.93521 1.22541 1.01772 0.95800 0.95644 1.22114 1.01994 0.95459 0.95926 1.22485 0.96650 0.92935 0.92209 0.92371 1.21963 0.98406 0.88805 0.96085 1.61693 1.60507 1.01578 1.02712 1.22372 0.97544 0.98287 0.88200 1.19057 0.95046 0.96208 0.90313 1.21205 1.17401 1.24299 0.92999 0.92902 1.24974 0.95073 0.95208 0.98964 1.69970 1.22412 1.33286 1.27630 0.86628 0.78860 0.79295 0.83413 1.20683 1.21266 1.19953 0.90740 0.94039 0.93501 0.91302 0.92522 0.93765 0.91117 0.94498 0.90691 0.91228 0.91642 0.90890 0.91176 0.94514 0.89424 0.96417 0.91633 0.95893 0.96656 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.50 37.16 0.35 -1.73 16 2 C -0.12 -1.69 5.22 -26.73 -0.14 -1.83 16 3 C 0.09 1.47 2.23 -67.52 -0.15 1.32 16 4 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.06 0.88 5.13 -4.15 -0.02 0.85 16 6 N -0.53 -7.43 4.85 -224.55 -1.09 -8.52 16 7 C 0.04 0.49 6.74 -2.59 -0.02 0.48 16 8 C -0.12 -1.24 7.06 -24.43 -0.17 -1.41 16 9 C -0.12 -1.42 6.66 -25.56 -0.17 -1.59 16 10 C 0.07 0.97 2.61 -66.98 -0.17 0.79 16 11 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 12 C 0.08 1.32 5.02 -3.88 -0.02 1.31 16 13 N -0.54 -9.92 3.53 -226.40 -0.80 -10.71 16 14 C 0.06 1.33 4.70 -3.82 -0.02 1.31 16 15 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.64 6.29 -51.93 -0.33 0.32 16 27 H 0.07 1.07 6.26 -51.93 -0.33 0.74 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.63 6.24 -51.93 -0.32 0.31 16 30 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.69 6.54 -51.93 -0.34 1.35 16 39 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 40 H 0.07 1.37 5.67 -51.93 -0.29 1.08 16 41 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.02 0.42 6.62 -51.93 -0.34 0.07 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -29.58 321.87 -10.20 -39.78 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.79 Total: -2.59 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.08 Total: -13.33 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -1.15 Total: -45.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.58 -10.20 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245413449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.797 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds