Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 H 1.08996 * 109.15854 * 305.01965 * 3 2 1 5 5 C 1.52521 * 108.89351 * 64.25366 * 3 2 1 6 6 N 1.45629 * 108.14213 * 64.49858 * 5 3 2 7 7 C 1.46952 * 117.16879 * 180.02562 * 6 5 3 8 8 C 1.55269 * 103.40136 * 197.48548 * 7 6 5 9 9 C 1.55062 * 104.91409 * 24.07826 * 8 7 6 10 10 C 1.48865 * 108.88975 * 63.01760 * 6 5 3 11 11 H 1.08999 * 110.30238 * 52.31558 * 10 6 5 12 12 C 1.52157 * 107.24770 * 292.25480 * 10 6 5 13 13 N 1.46589 * 109.16400 * 185.76248 * 3 2 1 14 14 C 1.46894 * 111.00175 * 59.48053 * 13 3 2 15 15 C 1.53003 * 109.47318 * 158.06014 * 14 13 3 16 16 C 1.50705 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00076 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99999 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99814 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99674 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46906 * 90.00110 * 20 18 16 22 22 H 1.48502 * 109.46997 * 209.99965 * 20 18 16 23 23 H 1.48495 * 109.47314 * 329.99979 * 20 18 16 24 24 H 1.08996 * 109.46885 * 53.94144 * 1 2 3 25 25 H 1.08997 * 109.47026 * 173.93565 * 1 2 3 26 26 H 1.09002 * 109.47023 * 293.93503 * 1 2 3 27 27 H 1.09003 * 109.47458 * 239.99895 * 2 1 3 28 28 H 1.09004 * 109.47091 * 120.00075 * 2 1 3 29 29 H 1.09001 * 109.95858 * 304.55734 * 5 3 2 30 30 H 1.08998 * 109.11947 * 183.96001 * 5 3 2 31 31 H 1.09006 * 110.62956 * 79.00822 * 7 6 5 32 32 H 1.08998 * 110.77285 * 316.03426 * 7 6 5 33 33 H 1.09004 * 110.34826 * 142.93490 * 8 7 6 34 34 H 1.08997 * 110.35433 * 265.21601 * 8 7 6 35 35 H 1.09003 * 110.50997 * 121.44480 * 9 8 7 36 36 H 1.09002 * 110.50886 * 244.14065 * 9 8 7 37 37 H 1.09002 * 109.86764 * 182.08559 * 12 10 6 38 38 H 1.09002 * 109.86775 * 303.12835 * 12 10 6 39 39 H 1.09006 * 109.47154 * 278.05760 * 14 13 3 40 40 H 1.09001 * 109.47475 * 38.05641 * 14 13 3 41 41 H 1.09000 * 109.47083 * 299.99309 * 15 14 13 42 42 H 1.08996 * 109.47420 * 60.00107 * 15 14 13 43 43 H 0.97002 * 119.99227 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9767 -0.8432 5 6 1.6137 2.1171 1.2998 6 7 2.2807 1.4391 2.4026 7 6 2.0068 1.9342 3.7588 8 6 3.1686 1.3401 4.6003 9 6 4.3098 1.0862 3.5817 10 6 3.7518 1.6149 2.2573 11 1 3.9966 2.6704 2.1391 12 6 4.1798 0.8340 1.0236 13 7 3.4993 1.4369 -0.1390 14 6 3.9067 0.7784 -1.3873 15 6 5.3098 1.2478 -1.7772 16 6 5.7279 0.5717 -3.0575 17 1 5.0600 -0.1235 -3.5442 18 6 6.9633 0.8408 -3.6076 19 7 7.3280 0.2511 -4.7251 20 14 8.1184 2.0438 -2.7661 21 1 8.9819 1.3114 -1.8054 22 1 8.9673 2.7106 -3.7859 23 1 7.3242 3.0659 -2.0382 24 1 -0.3633 0.6049 -0.8308 25 1 -0.3633 -1.0219 -0.1086 26 1 -0.3633 0.4169 0.9393 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5328 2.0438 1.4198 30 1 1.9138 3.1646 1.2735 31 1 1.0456 1.5644 4.1158 32 1 2.0316 3.0236 3.7849 33 1 3.4898 2.0531 5.3596 34 1 2.8598 0.4036 5.0649 35 1 5.2055 1.6385 3.8662 36 1 4.5251 0.0202 3.5072 37 1 5.2603 0.9036 0.8975 38 1 3.8844 -0.2103 1.1251 39 1 3.9120 -0.3020 -1.2432 40 1 3.2041 1.0357 -2.1800 41 1 5.3045 2.3282 -1.9214 42 1 6.0124 0.9904 -0.9846 43 1 8.1970 0.4408 -5.1123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245413450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = 4.627480 kcal Electronic energy + Delta-G solvation = -19844.714541 eV Core-core repulsion = 17117.300899 eV Total energy + Delta-G solvation = -2727.413641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27536 -37.04192 -34.12648 -32.65458 -31.57297 -30.68824 -29.00278 -27.29495 -24.90258 -23.89129 -22.72876 -21.47263 -20.77505 -19.92533 -18.58941 -16.85110 -15.86680 -15.61566 -15.23213 -15.20664 -14.27506 -14.20328 -13.83006 -13.61680 -13.12924 -13.07866 -12.53357 -12.46114 -12.37096 -11.97684 -11.60202 -11.52161 -11.34698 -11.25808 -11.03872 -10.91790 -10.74870 -10.62138 -10.49835 -10.17865 -9.86894 -9.81916 -9.58430 -9.15717 -8.49069 -8.37818 -7.66419 -6.00877 -3.98450 3.34471 3.41829 3.48611 3.98726 4.26205 4.49764 4.58445 4.71620 4.91966 5.09515 5.15035 5.21921 5.33976 5.37344 5.42930 5.48448 5.54854 5.60631 5.62727 5.67021 5.80929 5.82677 5.92757 5.96262 6.01072 6.07448 6.11312 6.19386 6.21903 6.29371 6.42848 6.45401 6.62522 6.85278 6.90507 7.16865 7.26374 7.38642 7.69106 7.72873 7.90427 8.57391 9.03779 9.62202 11.12624 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.006000 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.247813 B = 4665.348198 C = 5498.426441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.153 4.153 3 C 0.093 3.907 4 H 0.081 0.919 5 C 0.062 3.938 6 N -0.524 5.524 7 C 0.043 3.957 8 C -0.119 4.119 9 C -0.115 4.115 10 C 0.063 3.937 11 H 0.057 0.943 12 C 0.072 3.928 13 N -0.547 5.547 14 C 0.076 3.924 15 C -0.005 4.005 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.067 3.933 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.263 1.263 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.009 0.991 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 2.896 17.527 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.192 4.192 3 C -0.016 4.016 4 H 0.099 0.901 5 C -0.066 4.066 6 N -0.249 5.249 7 C -0.085 4.085 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.045 4.045 11 H 0.075 0.925 12 C -0.056 4.056 13 N -0.270 5.270 14 C -0.050 4.050 15 C -0.043 4.043 16 C -0.558 4.558 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.188 1.188 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.028 0.972 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.391 2.861 17.311 20.919 hybrid contribution 0.607 0.616 0.323 0.923 sum -10.784 3.477 17.634 20.961 Atomic orbital electron populations 1.21709 0.96228 1.01043 1.01118 1.22162 0.95879 0.98558 1.02618 1.21554 0.88560 0.95087 0.96392 0.90114 1.21894 0.98565 0.95772 0.90399 1.63899 1.05505 1.54519 1.01027 1.22778 0.99008 0.97230 0.89450 1.22536 0.94944 1.00929 0.97325 1.22097 0.97508 1.01965 0.93840 1.22480 0.88117 0.99183 0.94711 0.92514 1.21966 0.99159 0.96009 0.88437 1.61891 1.05258 1.56653 1.03208 1.22060 0.99108 0.95455 0.88420 1.19535 0.91403 0.97127 0.96189 1.21107 1.01967 1.26031 1.06707 0.91193 1.24988 0.97891 0.95778 0.94689 1.69920 1.21270 1.43591 1.19658 0.86774 0.80958 0.82182 0.79403 1.20408 1.21505 1.18755 0.93191 0.93355 0.92912 0.92019 0.90730 0.90406 0.94545 0.90618 0.94490 0.91658 0.91172 0.91279 0.90855 0.90114 0.93837 0.95149 0.91834 0.95940 0.97232 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.50 37.16 0.35 -1.30 16 2 C -0.15 -2.14 4.73 -26.73 -0.13 -2.27 16 3 C 0.09 1.37 2.33 -68.13 -0.16 1.21 16 4 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 5 C 0.06 0.80 5.19 -4.76 -0.02 0.77 16 6 N -0.52 -6.62 4.10 -225.31 -0.92 -7.54 16 7 C 0.04 0.45 6.73 -2.59 -0.02 0.43 16 8 C -0.12 -1.12 7.06 -24.44 -0.17 -1.29 16 9 C -0.12 -1.28 6.67 -25.57 -0.17 -1.45 16 10 C 0.06 0.86 2.59 -66.98 -0.17 0.69 16 11 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 12 C 0.07 1.17 4.71 -3.87 -0.02 1.15 16 13 N -0.55 -9.58 4.48 -227.13 -1.02 -10.60 16 14 C 0.08 1.56 3.81 -3.83 -0.01 1.55 16 15 C 0.00 -0.11 4.15 -27.88 -0.12 -0.23 16 16 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 19 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 20 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.57 6.71 -51.93 -0.35 0.22 16 27 H 0.06 0.96 6.58 -51.93 -0.34 0.62 16 28 H 0.07 1.11 6.35 -51.93 -0.33 0.78 16 29 H 0.08 0.88 6.43 -51.93 -0.33 0.55 16 30 H 0.04 0.49 8.02 -51.93 -0.42 0.08 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.82 8.03 -51.93 -0.42 0.41 16 37 H 0.08 1.39 6.87 -51.93 -0.36 1.04 16 38 H 0.04 0.71 6.86 -51.93 -0.36 0.36 16 39 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 40 H 0.06 1.31 7.84 -51.93 -0.41 0.91 16 41 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 42 H 0.01 0.23 6.35 -51.93 -0.33 -0.10 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -30.35 317.25 -9.89 -40.24 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.77 Total: -2.70 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.07 Total: -14.19 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -1.17 Total: -45.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.35 -9.89 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245413450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.868 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds