Wall clock time and date at job start Mon Mar 30 2020 04:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 H 1.08996 * 109.15854 * 305.01965 * 3 2 1 5 5 C 1.52521 * 108.89351 * 64.25366 * 3 2 1 6 6 N 1.45629 * 108.14213 * 64.49858 * 5 3 2 7 7 C 1.46952 * 117.16879 * 180.02562 * 6 5 3 8 8 C 1.55269 * 103.40136 * 197.48548 * 7 6 5 9 9 C 1.55062 * 104.91409 * 24.07826 * 8 7 6 10 10 C 1.48865 * 108.88975 * 63.01760 * 6 5 3 11 11 H 1.08999 * 110.30238 * 52.31558 * 10 6 5 12 12 C 1.52157 * 107.24770 * 292.25480 * 10 6 5 13 13 N 1.46589 * 109.16400 * 185.76248 * 3 2 1 14 14 C 1.46894 * 111.00175 * 59.48053 * 13 3 2 15 15 C 1.53003 * 109.47318 * 158.06014 * 14 13 3 16 16 C 1.50705 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00076 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99999 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99814 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99674 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46906 * 90.00110 * 20 18 16 22 22 H 1.48502 * 109.46997 * 209.99965 * 20 18 16 23 23 H 1.48495 * 109.47314 * 329.99979 * 20 18 16 24 24 H 1.08996 * 109.46885 * 53.94144 * 1 2 3 25 25 H 1.08997 * 109.47026 * 173.93565 * 1 2 3 26 26 H 1.09002 * 109.47023 * 293.93503 * 1 2 3 27 27 H 1.09003 * 109.47458 * 239.99895 * 2 1 3 28 28 H 1.09004 * 109.47091 * 120.00075 * 2 1 3 29 29 H 1.09001 * 109.95858 * 304.55734 * 5 3 2 30 30 H 1.08998 * 109.11947 * 183.96001 * 5 3 2 31 31 H 1.09006 * 110.62956 * 79.00822 * 7 6 5 32 32 H 1.08998 * 110.77285 * 316.03426 * 7 6 5 33 33 H 1.09004 * 110.34826 * 142.93490 * 8 7 6 34 34 H 1.08997 * 110.35433 * 265.21601 * 8 7 6 35 35 H 1.09003 * 110.50997 * 121.44480 * 9 8 7 36 36 H 1.09002 * 110.50886 * 244.14065 * 9 8 7 37 37 H 1.09002 * 109.86764 * 182.08559 * 12 10 6 38 38 H 1.09002 * 109.86775 * 303.12835 * 12 10 6 39 39 H 1.09006 * 109.47154 * 278.05760 * 14 13 3 40 40 H 1.09001 * 109.47475 * 38.05641 * 14 13 3 41 41 H 1.09000 * 109.47083 * 299.99309 * 15 14 13 42 42 H 1.08996 * 109.47420 * 60.00107 * 15 14 13 43 43 H 0.97002 * 119.99227 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9767 -0.8432 5 6 1.6137 2.1171 1.2998 6 7 2.2807 1.4391 2.4026 7 6 2.0068 1.9342 3.7588 8 6 3.1686 1.3401 4.6003 9 6 4.3098 1.0862 3.5817 10 6 3.7518 1.6149 2.2573 11 1 3.9966 2.6704 2.1391 12 6 4.1798 0.8340 1.0236 13 7 3.4993 1.4369 -0.1390 14 6 3.9067 0.7784 -1.3873 15 6 5.3098 1.2478 -1.7772 16 6 5.7279 0.5717 -3.0575 17 1 5.0600 -0.1235 -3.5442 18 6 6.9633 0.8408 -3.6076 19 7 7.3280 0.2511 -4.7251 20 14 8.1184 2.0438 -2.7661 21 1 8.9819 1.3114 -1.8054 22 1 8.9673 2.7106 -3.7859 23 1 7.3242 3.0659 -2.0382 24 1 -0.3633 0.6049 -0.8308 25 1 -0.3633 -1.0219 -0.1086 26 1 -0.3633 0.4169 0.9393 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5328 2.0438 1.4198 30 1 1.9138 3.1646 1.2735 31 1 1.0456 1.5644 4.1158 32 1 2.0316 3.0236 3.7849 33 1 3.4898 2.0531 5.3596 34 1 2.8598 0.4036 5.0649 35 1 5.2055 1.6385 3.8662 36 1 4.5251 0.0202 3.5072 37 1 5.2603 0.9036 0.8975 38 1 3.8844 -0.2103 1.1251 39 1 3.9120 -0.3020 -1.2432 40 1 3.2041 1.0357 -2.1800 41 1 5.3045 2.3282 -1.9214 42 1 6.0124 0.9904 -0.9846 43 1 8.1970 0.4408 -5.1123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245413450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:57 Heat of formation + Delta-G solvation = -15.342402 kcal Electronic energy + Delta-G solvation = -19845.580500 eV Core-core repulsion = 17117.300899 eV Total energy + Delta-G solvation = -2728.279601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38505 -38.21394 -35.71394 -34.50509 -32.56188 -32.27699 -30.37776 -28.40803 -26.49986 -25.08115 -24.11562 -22.56281 -22.00147 -21.36412 -19.75344 -18.99166 -17.08186 -16.60404 -16.48854 -16.38642 -16.10574 -15.49053 -15.18825 -14.94459 -14.59320 -14.51301 -13.99683 -13.70482 -13.43437 -13.33178 -13.03595 -12.81222 -12.57885 -12.43889 -12.26367 -12.01971 -11.97082 -11.91149 -11.78359 -11.60225 -11.55587 -11.36116 -11.32115 -11.10784 -10.75487 -9.37898 -9.07377 -8.30456 -6.34371 1.34667 1.37067 1.50560 2.36001 2.92538 3.03917 3.05462 3.65002 3.75294 3.96782 4.04851 4.13287 4.24192 4.31392 4.35396 4.39173 4.52797 4.58191 4.61355 4.65262 4.68010 4.71856 4.80077 4.86946 4.94094 4.98830 4.99794 5.07326 5.12663 5.18443 5.25408 5.29821 5.32661 5.34161 5.47321 5.48824 5.63309 5.91097 6.10519 6.26866 6.32860 6.36123 6.73022 7.30466 8.86381 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.006000 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.247813 B = 4665.348198 C = 5498.426441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.090 3.910 4 H 0.078 0.922 5 C 0.070 3.930 6 N -0.531 5.531 7 C 0.043 3.957 8 C -0.112 4.112 9 C -0.114 4.114 10 C 0.067 3.933 11 H 0.046 0.954 12 C 0.073 3.927 13 N -0.553 5.553 14 C 0.092 3.908 15 C 0.004 3.996 16 C -0.532 4.532 17 H 0.031 0.969 18 C 0.008 3.992 19 N -0.950 5.950 20 Si 0.951 3.049 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.251 1.251 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.014 0.986 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 4.184 20.295 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C -0.019 4.019 4 H 0.096 0.904 5 C -0.059 4.059 6 N -0.256 5.256 7 C -0.085 4.085 8 C -0.150 4.150 9 C -0.153 4.153 10 C -0.042 4.042 11 H 0.064 0.936 12 C -0.055 4.055 13 N -0.277 5.277 14 C -0.035 4.035 15 C -0.034 4.034 16 C -0.571 4.571 17 H 0.050 0.950 18 C -0.189 4.189 19 N -0.591 5.591 20 Si 0.774 3.226 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.174 1.174 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.032 0.968 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.103 4.148 20.102 23.828 hybrid contribution 0.763 0.146 -0.592 0.977 sum -11.340 4.294 19.509 22.971 Atomic orbital electron populations 1.21652 0.93923 1.01713 1.02092 1.22043 0.97827 0.97548 1.00981 1.21662 0.86583 0.95827 0.97834 0.90377 1.21827 0.99722 0.95005 0.89328 1.63897 1.04675 1.54898 1.02135 1.22883 1.00110 0.97584 0.87904 1.22534 0.93695 1.01800 0.96996 1.22112 0.98573 1.01724 0.92895 1.22384 0.89199 0.98012 0.94580 0.93625 1.21957 0.98154 0.96169 0.89202 1.61809 1.07402 1.56171 1.02310 1.21689 0.96898 0.94847 0.90097 1.19388 0.93697 0.96180 0.94101 1.21410 1.01683 1.25648 1.08314 0.95035 1.25947 0.99802 0.97794 0.95313 1.70064 1.22155 1.45432 1.21439 0.85651 0.78613 0.79795 0.78556 1.19053 1.20759 1.17431 0.92686 0.92811 0.91477 0.94443 0.91528 0.88230 0.95085 0.89166 0.94095 0.89875 0.90387 0.90347 0.91242 0.91671 0.94453 0.96256 0.92556 0.96366 0.96778 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.50 71.98 0.68 -2.20 16 2 C -0.14 -3.98 4.73 30.59 0.14 -3.83 16 3 C 0.09 2.57 2.33 44.82 0.10 2.67 16 4 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 5 C 0.07 1.64 5.19 86.38 0.45 2.08 16 6 N -0.53 -12.16 4.10 -866.76 -3.55 -15.72 16 7 C 0.04 0.74 6.73 87.07 0.59 1.32 16 8 C -0.11 -1.74 7.06 32.08 0.23 -1.51 16 9 C -0.11 -2.28 6.67 31.35 0.21 -2.07 16 10 C 0.07 1.71 2.59 44.30 0.11 1.82 16 11 H 0.05 1.28 8.01 -2.39 -0.02 1.26 16 12 C 0.07 2.34 4.71 85.89 0.40 2.74 16 13 N -0.55 -19.38 4.48 -872.51 -3.91 -23.29 16 14 C 0.09 3.90 3.81 86.31 0.33 4.22 16 15 C 0.00 0.21 4.15 29.85 0.12 0.33 16 16 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 17 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 18 C 0.01 0.50 5.47 84.66 0.46 0.96 16 19 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 20 Si 0.95 45.72 27.47 68.60 1.88 47.60 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.24 6.71 -2.39 -0.02 1.22 16 27 H 0.04 1.19 6.58 -2.39 -0.02 1.18 16 28 H 0.07 1.94 6.35 -2.38 -0.02 1.92 16 29 H 0.10 1.93 6.43 -2.39 -0.02 1.91 16 30 H 0.03 0.77 8.02 -2.39 -0.02 0.75 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.44 8.03 -2.39 -0.02 1.42 16 37 H 0.06 2.25 6.87 -2.39 -0.02 2.24 16 38 H 0.04 1.23 6.86 -2.39 -0.02 1.22 16 39 H 0.02 0.84 7.29 -2.38 -0.02 0.83 16 40 H 0.06 2.42 7.84 -2.39 -0.02 2.40 16 41 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 42 H 0.01 0.68 6.35 -2.39 -0.02 0.66 16 43 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -66.35 317.25 -0.30 -66.65 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.89 Total: 10.13 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.09 Total: -24.94 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -7.16 Total: -99.44 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -66.35 -0.30 -66.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245413450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.307 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds