Wall clock time and date at job start Mon Mar 30 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 14 14 C 1.47550 * 111.00067 * 66.04481 * 13 3 2 15 15 C 1.52303 * 107.44391 * 182.93828 * 14 13 3 16 16 H 1.09001 * 110.91572 * 58.86057 * 15 14 13 17 17 C 1.53828 * 113.74271 * 184.79957 * 15 14 13 18 18 C 1.55414 * 101.98195 * 155.21412 * 17 15 14 19 19 C 1.54890 * 104.96935 * 337.72629 * 18 17 15 20 20 N 1.46646 * 106.21790 * 356.62996 * 19 18 17 21 21 C 1.45470 * 118.59196 * 151.56876 * 20 19 18 22 22 C 1.46606 * 111.00015 * 192.21341 * 13 3 2 23 23 H 1.08999 * 109.17513 * 300.35679 * 22 13 3 24 24 C 1.53002 * 109.17909 * 59.58993 * 22 13 3 25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 27 27 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 28 28 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 29 29 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.86837 * 302.42112 * 14 13 3 32 32 H 1.08998 * 109.86691 * 63.38784 * 14 13 3 33 33 H 1.08997 * 110.92833 * 273.38113 * 17 15 14 34 34 H 1.08993 * 110.92916 * 37.00880 * 17 15 14 35 35 H 1.08993 * 110.33897 * 96.59881 * 18 17 15 36 36 H 1.09000 * 110.33600 * 218.74714 * 18 17 15 37 37 H 1.08993 * 110.17713 * 115.14018 * 19 18 17 38 38 H 1.08995 * 110.16995 * 236.87805 * 19 18 17 39 39 H 1.09002 * 109.83879 * 295.81413 * 21 20 19 40 40 H 1.08998 * 109.83943 * 56.71164 * 21 20 19 41 41 H 1.08997 * 109.46892 * 60.00683 * 24 22 13 42 42 H 1.09004 * 109.46696 * 180.02562 * 24 22 13 43 43 H 1.08994 * 109.47199 * 300.00361 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5967 0.1450 -0.2343 11 1 6.3978 0.2166 -2.6504 12 1 6.5006 2.2798 -1.3807 13 7 1.6515 2.0992 1.2553 14 6 2.3372 1.4844 2.4080 15 6 1.8231 2.1729 3.6655 16 1 0.7425 2.0622 3.7556 17 6 2.5325 1.7207 4.9533 18 6 2.3249 2.9479 5.8841 19 6 2.0648 4.1370 4.9262 20 7 2.2085 3.6067 3.5666 21 6 1.4558 4.2341 2.4914 22 6 1.8632 3.5478 1.1778 23 1 2.9171 3.7457 0.9822 24 6 1.0249 4.1177 0.0318 25 1 -0.3633 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0604 -2.9503 31 1 2.1093 0.4193 2.4496 32 1 3.4138 1.6294 2.3191 33 1 2.0566 0.8323 5.3685 34 1 3.5926 1.5436 4.7723 35 1 1.4642 2.7893 6.5337 36 1 3.2201 3.1275 6.4794 37 1 1.0522 4.5160 5.0638 38 1 2.7904 4.9302 5.1061 39 1 0.3873 4.1021 2.6619 40 1 1.6942 5.2967 2.4442 41 1 -0.0295 3.9114 0.2154 42 1 1.1792 5.1950 -0.0304 43 1 1.3281 3.6529 -0.9063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251364222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:56 Heat of formation + Delta-G solvation = 10.091635 kcal Electronic energy + Delta-G solvation = -20491.475366 eV Core-core repulsion = 17764.298668 eV Total energy + Delta-G solvation = -2727.176698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60372 -36.74329 -33.75587 -32.04169 -31.01213 -30.45634 -28.52496 -26.13603 -25.15362 -23.73776 -22.63440 -20.60304 -20.40708 -19.49975 -18.70746 -16.20771 -15.67724 -15.48328 -14.65542 -14.51423 -14.15711 -13.63719 -13.54402 -13.10846 -12.78160 -12.33736 -12.21940 -11.92649 -11.77621 -11.46602 -11.25237 -11.17554 -11.10809 -10.84725 -10.67965 -10.60534 -10.46621 -10.30464 -10.20848 -10.09166 -9.63503 -9.56757 -9.27644 -8.94884 -8.26586 -7.90929 -6.97956 -5.92370 -4.04735 3.32280 3.36948 3.40628 4.28215 4.45165 4.76757 4.94119 5.08519 5.13254 5.31299 5.55073 5.56335 5.71886 5.81344 5.82265 5.90455 5.93056 6.06380 6.15842 6.20855 6.23432 6.28133 6.37895 6.42055 6.48522 6.53404 6.65040 6.73836 6.85649 6.92361 7.06230 7.16206 7.23664 7.32836 7.45481 7.66224 7.70267 7.83592 8.07753 8.24692 8.43226 8.57538 9.05979 9.62218 11.06389 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.007753 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.468469 B = 3610.763246 C = 3923.848604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.045 0.955 5 C -0.538 4.538 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.539 5.539 14 C 0.081 3.919 15 C 0.069 3.931 16 H 0.052 0.948 17 C -0.115 4.115 18 C -0.126 4.126 19 C 0.054 3.946 20 N -0.544 5.544 21 C 0.074 3.926 22 C 0.097 3.903 23 H 0.050 0.950 24 C -0.141 4.141 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 4.534 10.850 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.063 0.937 5 C -0.577 4.577 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.264 5.264 14 C -0.048 4.048 15 C -0.039 4.039 16 H 0.070 0.930 17 C -0.154 4.154 18 C -0.164 4.164 19 C -0.074 4.074 20 N -0.270 5.270 21 C -0.054 4.054 22 C -0.013 4.013 23 H 0.068 0.932 24 C -0.199 4.199 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.232 4.491 10.570 12.239 hybrid contribution 1.111 0.137 -0.040 1.120 sum -3.121 4.628 10.530 11.918 Atomic orbital electron populations 1.21695 0.99013 0.98263 1.00434 1.21599 0.92097 0.99411 1.01812 1.19325 0.92994 0.90979 0.86018 0.93692 1.21750 0.92995 1.37664 1.05333 0.92490 1.24890 0.97603 0.95181 0.95744 1.69863 1.34748 1.38599 1.09445 0.86772 0.86518 0.78171 0.77209 1.20388 1.21381 1.20443 1.62074 1.57706 1.01533 1.05101 1.21805 0.97611 0.97354 0.87981 1.22684 0.97518 0.88264 0.95403 0.93038 1.22328 1.01543 0.96715 0.94788 1.22624 1.01289 0.95009 0.97450 1.22481 0.99104 0.97216 0.88624 1.62595 1.57016 1.03432 1.03940 1.22046 0.94808 0.97485 0.91098 1.21327 0.98584 0.89336 0.92046 0.93248 1.21833 0.99678 0.98882 0.99474 0.95745 0.93501 0.94349 0.89051 0.95040 0.92967 0.91197 0.93145 0.91375 0.90653 0.91942 0.91401 0.95162 0.91124 0.95126 0.91648 0.93099 0.93747 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.42 16 2 C -0.11 -2.61 5.17 -26.73 -0.14 -2.74 16 3 C 0.21 5.13 1.52 -68.86 -0.10 5.03 16 4 H 0.05 1.19 5.70 -51.93 -0.30 0.90 16 5 C -0.54 -14.31 7.16 -34.44 -0.25 -14.55 16 6 H 0.06 1.56 5.97 -52.49 -0.31 1.25 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.83 11.29 55.43 0.63 -24.21 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.54 -11.28 3.79 -219.78 -0.83 -12.11 16 14 C 0.08 1.61 4.55 -3.82 -0.02 1.59 16 15 C 0.07 1.15 2.73 -66.59 -0.18 0.97 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 C -0.12 -1.58 6.64 -25.02 -0.17 -1.75 16 18 C -0.13 -1.49 6.99 -24.45 -0.17 -1.66 16 19 C 0.05 0.72 6.93 -2.97 -0.02 0.70 16 20 N -0.54 -9.00 4.66 -224.74 -1.05 -10.04 16 21 C 0.07 1.24 5.35 -4.23 -0.02 1.22 16 22 C 0.10 1.89 2.41 -67.50 -0.16 1.72 16 23 H 0.05 1.11 7.26 -51.93 -0.38 0.74 16 24 C -0.14 -2.54 8.96 37.16 0.33 -2.21 16 25 H 0.02 0.44 8.14 -51.94 -0.42 0.02 16 26 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 2.41 5.95 -51.92 -0.31 2.10 16 29 H 0.03 0.73 6.30 -51.93 -0.33 0.40 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.07 1.41 6.31 -51.93 -0.33 1.08 16 32 H 0.05 1.13 6.30 -51.93 -0.33 0.80 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.44 6.12 -51.93 -0.32 1.12 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -27.14 315.67 -9.76 -36.90 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.62 Total: 0.77 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.63 Total: -12.37 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -1.25 Total: -46.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.14 -9.76 -36.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.990 kcal (2) G-P(sol) polarization free energy of solvation -27.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds