Wall clock time and date at job start Mon Mar 30 2020 04:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 14 14 C 1.47550 * 111.00067 * 66.04481 * 13 3 2 15 15 C 1.52303 * 107.44391 * 182.93828 * 14 13 3 16 16 H 1.09001 * 110.91572 * 58.86057 * 15 14 13 17 17 C 1.53828 * 113.74271 * 184.79957 * 15 14 13 18 18 C 1.55414 * 101.98195 * 155.21412 * 17 15 14 19 19 C 1.54890 * 104.96935 * 337.72629 * 18 17 15 20 20 N 1.46646 * 106.21790 * 356.62996 * 19 18 17 21 21 C 1.45470 * 118.59196 * 151.56876 * 20 19 18 22 22 C 1.46606 * 111.00015 * 192.21341 * 13 3 2 23 23 H 1.08999 * 109.17513 * 300.35679 * 22 13 3 24 24 C 1.53002 * 109.17909 * 59.58993 * 22 13 3 25 25 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 27 27 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 28 28 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 29 29 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.86837 * 302.42112 * 14 13 3 32 32 H 1.08998 * 109.86691 * 63.38784 * 14 13 3 33 33 H 1.08997 * 110.92833 * 273.38113 * 17 15 14 34 34 H 1.08993 * 110.92916 * 37.00880 * 17 15 14 35 35 H 1.08993 * 110.33897 * 96.59881 * 18 17 15 36 36 H 1.09000 * 110.33600 * 218.74714 * 18 17 15 37 37 H 1.08993 * 110.17713 * 115.14018 * 19 18 17 38 38 H 1.08995 * 110.16995 * 236.87805 * 19 18 17 39 39 H 1.09002 * 109.83879 * 295.81413 * 21 20 19 40 40 H 1.08998 * 109.83943 * 56.71164 * 21 20 19 41 41 H 1.08997 * 109.46892 * 60.00683 * 24 22 13 42 42 H 1.09004 * 109.46696 * 180.02562 * 24 22 13 43 43 H 1.08994 * 109.47199 * 300.00361 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5967 0.1450 -0.2343 11 1 6.3978 0.2166 -2.6504 12 1 6.5006 2.2798 -1.3807 13 7 1.6515 2.0992 1.2553 14 6 2.3372 1.4844 2.4080 15 6 1.8231 2.1729 3.6655 16 1 0.7425 2.0622 3.7556 17 6 2.5325 1.7207 4.9533 18 6 2.3249 2.9479 5.8841 19 6 2.0648 4.1370 4.9262 20 7 2.2085 3.6067 3.5666 21 6 1.4558 4.2341 2.4914 22 6 1.8632 3.5478 1.1778 23 1 2.9171 3.7457 0.9822 24 6 1.0249 4.1177 0.0318 25 1 -0.3633 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0604 -2.9503 31 1 2.1093 0.4193 2.4496 32 1 3.4138 1.6294 2.3191 33 1 2.0566 0.8323 5.3685 34 1 3.5926 1.5436 4.7723 35 1 1.4642 2.7893 6.5337 36 1 3.2201 3.1275 6.4794 37 1 1.0522 4.5160 5.0638 38 1 2.7904 4.9302 5.1061 39 1 0.3873 4.1021 2.6619 40 1 1.6942 5.2967 2.4442 41 1 -0.0295 3.9114 0.2154 42 1 1.1792 5.1950 -0.0304 43 1 1.3281 3.6529 -0.9063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251364222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:55 Heat of formation + Delta-G solvation = -6.405730 kcal Electronic energy + Delta-G solvation = -20492.190745 eV Core-core repulsion = 17764.298668 eV Total energy + Delta-G solvation = -2727.892077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99712 -38.30222 -35.42044 -33.85974 -32.69212 -31.74317 -30.01977 -27.97695 -26.48534 -25.39591 -24.36532 -21.93928 -21.64024 -21.04974 -20.48673 -18.16777 -17.17558 -16.80073 -16.50770 -15.88915 -15.56200 -15.26121 -15.17497 -14.74575 -14.27529 -13.82690 -13.64606 -13.46107 -13.30771 -13.08104 -12.96761 -12.67618 -12.67283 -12.49254 -12.27520 -12.02166 -11.93089 -11.85737 -11.76813 -11.48565 -11.39652 -11.35721 -11.03242 -10.82486 -10.33444 -9.16153 -8.81645 -7.99145 -6.20428 1.36622 1.37497 1.44792 2.41421 3.06270 3.17770 3.33319 3.74795 3.88236 4.06058 4.23832 4.36714 4.41800 4.44872 4.51299 4.62883 4.70842 4.75566 4.78979 4.82548 4.86170 4.88635 4.95517 4.99693 5.04795 5.06633 5.20950 5.25319 5.34892 5.36731 5.38072 5.44368 5.48682 5.56004 5.69083 5.84984 6.06480 6.12502 6.27217 6.42056 6.50633 6.78991 7.01627 7.49242 8.94527 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.007753 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.468469 B = 3610.763246 C = 3923.848604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.020 0.980 5 C -0.545 4.545 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.939 3.061 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.533 5.533 14 C 0.086 3.914 15 C 0.074 3.926 16 H 0.053 0.947 17 C -0.113 4.113 18 C -0.116 4.116 19 C 0.052 3.948 20 N -0.565 5.565 21 C 0.085 3.915 22 C 0.094 3.906 23 H 0.011 0.989 24 C -0.132 4.132 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 5.286 12.949 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.037 0.963 5 C -0.584 4.584 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.766 3.234 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.257 5.257 14 C -0.042 4.042 15 C -0.034 4.034 16 H 0.071 0.929 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.075 4.075 20 N -0.291 5.291 21 C -0.044 4.044 22 C -0.016 4.016 23 H 0.029 0.971 24 C -0.190 4.190 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.943 5.252 12.687 14.594 hybrid contribution 1.349 -0.074 -0.695 1.519 sum -3.594 5.179 11.993 13.548 Atomic orbital electron populations 1.21538 0.96298 0.99655 1.00544 1.21444 0.94469 0.98479 1.00077 1.19094 0.91413 0.91364 0.86866 0.96252 1.21944 0.94463 1.37132 1.04858 0.93989 1.25522 1.01257 0.95177 0.95660 1.69979 1.36013 1.39222 1.09748 0.85910 0.82214 0.77985 0.77285 1.20145 1.20716 1.20467 1.62072 1.57215 1.02372 1.04054 1.21739 0.95611 0.97420 0.89480 1.22574 0.97614 0.88400 0.94773 0.92871 1.22328 1.00512 0.98525 0.93819 1.22619 1.02955 0.92924 0.96933 1.22592 1.00094 0.98015 0.86807 1.62545 1.57422 1.03440 1.05666 1.21888 0.95102 0.97900 0.89500 1.21412 0.96748 0.88716 0.94695 0.97056 1.21740 0.99854 1.00156 0.97254 0.93712 0.92623 0.94850 0.92056 0.95367 0.93024 0.91991 0.96444 0.89585 0.91973 0.89812 0.89981 0.93979 0.90336 0.94350 0.89922 0.91958 0.91121 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.80 71.98 0.71 -4.24 16 2 C -0.11 -5.11 5.17 30.59 0.16 -4.95 16 3 C 0.22 10.96 1.52 44.17 0.07 11.03 16 4 H 0.02 1.08 5.70 -2.39 -0.01 1.07 16 5 C -0.54 -30.10 7.16 25.60 0.18 -29.91 16 6 H 0.04 2.41 5.97 -2.91 -0.02 2.39 16 7 C 0.02 1.31 5.29 84.66 0.45 1.75 16 8 N -0.91 -52.36 11.29 21.45 0.24 -52.12 16 9 Si 0.94 44.73 29.54 68.60 2.03 46.75 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.53 -22.63 3.79 -849.24 -3.22 -25.84 16 14 C 0.09 3.46 4.55 85.95 0.39 3.85 16 15 C 0.07 2.37 2.73 44.60 0.12 2.49 16 16 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 17 C -0.11 -2.87 6.64 31.70 0.21 -2.65 16 18 C -0.12 -2.33 6.99 32.07 0.22 -2.11 16 19 C 0.05 1.22 6.93 87.00 0.60 1.83 16 20 N -0.56 -17.69 4.66 -864.94 -4.03 -21.72 16 21 C 0.08 2.68 5.35 86.81 0.46 3.14 16 22 C 0.09 3.69 2.41 45.21 0.11 3.80 16 23 H 0.01 0.53 7.26 -2.39 -0.02 0.51 16 24 C -0.13 -4.75 8.96 71.98 0.64 -4.11 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 27 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 3.34 5.95 -2.38 -0.01 3.32 16 29 H 0.03 1.33 6.30 -2.39 -0.02 1.32 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.60 16 31 H 0.06 2.54 6.31 -2.39 -0.02 2.53 16 32 H 0.02 0.81 6.30 -2.39 -0.02 0.80 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.04 0.91 8.06 -2.39 -0.02 0.89 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.17 8.08 -2.39 -0.02 1.15 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 43 H 0.04 1.62 6.12 -2.39 -0.01 1.60 16 Total: -1.00 -60.03 315.67 0.31 -59.72 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.96 Total: 13.29 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 4.33 Total: -20.08 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -7.00 Total: -99.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.03 0.31 -59.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251364222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.310 kcal (2) G-P(sol) polarization free energy of solvation -60.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds