Wall clock time and date at job start Mon Mar 30 2020 04:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47031 * 2 1 4 4 H 1.09001 * 109.47059 * 303.95526 * 3 2 1 5 5 C 1.50693 * 109.47273 * 183.95626 * 3 2 1 6 6 H 1.08007 * 120.00016 * 264.46787 * 5 3 2 7 7 C 1.37870 * 120.00388 * 84.46839 * 5 3 2 8 8 N 1.31518 * 119.99975 * 1.88034 * 7 5 3 9 9 Si 1.86806 * 120.00328 * 181.88565 * 7 5 3 10 10 H 1.48497 * 109.46780 * 269.99918 * 9 7 5 11 11 H 1.48500 * 109.46954 * 29.99672 * 9 7 5 12 12 H 1.48500 * 109.47338 * 149.99986 * 9 7 5 13 13 N 1.46898 * 109.47122 * 63.95170 * 3 2 1 14 14 C 1.47038 * 110.99801 * 70.65137 * 13 3 2 15 15 C 1.54097 * 107.04133 * 140.59959 * 14 13 3 16 16 H 1.09003 * 112.90609 * 96.62777 * 15 14 13 17 17 C 1.54154 * 108.97715 * 222.89536 * 15 14 13 18 18 N 1.47832 * 107.25771 * 110.83505 * 17 15 14 19 19 C 1.49678 * 105.58935 * 334.56693 * 18 17 15 20 20 C 1.54589 * 102.64755 * 40.22525 * 19 18 17 21 21 H 1.09001 * 113.10503 * 83.05181 * 20 19 18 22 22 C 1.46998 * 111.00236 * 192.36243 * 13 3 2 23 23 C 1.53002 * 109.73527 * 354.98967 * 22 13 3 24 24 C 1.52998 * 109.73603 * 115.61948 * 22 13 3 25 25 H 1.09007 * 109.46764 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47475 * 299.99882 * 1 2 3 27 27 H 1.08996 * 109.47375 * 60.00231 * 1 2 3 28 28 H 1.09001 * 109.47475 * 240.00118 * 2 1 3 29 29 H 1.09004 * 109.47340 * 119.99413 * 2 1 3 30 30 H 0.96994 * 119.99602 * 354.87311 * 8 7 5 31 31 H 1.08995 * 109.91837 * 259.94524 * 14 13 3 32 32 H 1.08995 * 109.91835 * 21.24867 * 14 13 3 33 33 H 1.09000 * 109.88533 * 230.24903 * 17 15 14 34 34 H 1.09004 * 109.88838 * 351.26296 * 17 15 14 35 35 H 1.00904 * 110.99859 * 95.61170 * 18 17 15 36 36 H 1.08996 * 111.64691 * 281.64513 * 19 18 17 37 37 H 1.08999 * 110.19935 * 158.14125 * 19 18 17 38 38 H 1.09001 * 109.47119 * 58.50521 * 23 22 13 39 39 H 1.08996 * 109.47222 * 178.50139 * 23 22 13 40 40 H 1.09002 * 109.47186 * 298.50317 * 23 22 13 41 41 H 1.08996 * 109.47223 * 58.55458 * 24 22 13 42 42 H 1.09001 * 109.46931 * 178.54634 * 24 22 13 43 43 H 1.08994 * 109.47186 * 298.54555 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6199 1.9764 -0.8524 5 6 3.5437 1.4437 -0.0980 6 1 4.1432 1.5129 0.7977 7 6 4.1543 1.3566 -1.3311 8 7 3.4247 1.3096 -2.4243 9 14 6.0179 1.3049 -1.4490 10 1 6.5451 2.6885 -1.5625 11 1 6.5733 0.6619 -0.2312 12 1 6.4166 0.5234 -2.6472 13 7 1.6298 2.1069 1.2443 14 6 2.3740 1.5753 2.3956 15 6 2.7024 2.7700 3.3117 16 1 1.9891 2.8877 4.1275 17 6 4.1580 2.6401 3.8025 18 7 4.9365 3.7181 3.1564 19 6 4.2006 4.0449 1.8946 20 6 2.7215 3.9834 2.3398 21 1 2.3772 4.9052 2.8087 22 6 1.8400 3.5594 1.1601 23 6 2.5381 3.9048 -0.1568 24 6 0.4934 4.2816 1.2354 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.4580 1.2613 -2.3605 31 1 1.7600 0.8528 2.9332 32 1 3.2959 1.1033 2.0559 33 1 4.1955 2.7540 4.8859 34 1 4.5599 1.6677 3.5180 35 1 5.0112 4.5224 3.7610 36 1 4.3979 3.3117 1.1127 37 1 4.4595 5.0484 1.5571 38 1 1.9304 3.5571 -0.9923 39 1 2.6679 4.9848 -0.2268 40 1 3.5132 3.4188 -0.1897 41 1 -0.0067 4.0215 2.1683 42 1 0.6562 5.3587 1.1986 43 1 -0.1287 3.9792 0.3931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251365979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:20 Heat of formation + Delta-G solvation = 5.107845 kcal Electronic energy + Delta-G solvation = -21374.088131 eV Core-core repulsion = 18646.695320 eV Total energy + Delta-G solvation = -2727.392811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93531 -37.91987 -35.44627 -34.09120 -32.82656 -30.68271 -29.28866 -28.20262 -26.95818 -25.57445 -24.51955 -22.85338 -21.88017 -20.65847 -19.73696 -18.34912 -17.63667 -16.66229 -16.04467 -15.77990 -15.68131 -14.97053 -14.88165 -14.65348 -14.41274 -14.08616 -13.63623 -13.32137 -13.22441 -12.86647 -12.76681 -12.54661 -12.51372 -12.39135 -12.18390 -12.10339 -11.99390 -11.82626 -11.47929 -11.38296 -11.34728 -11.21679 -11.00466 -10.66345 -10.27278 -9.51568 -8.68576 -8.36302 -6.07783 1.53321 1.57798 1.74004 2.57971 3.25647 3.32961 3.50685 3.55905 3.78141 4.15116 4.30169 4.36817 4.44262 4.47366 4.51254 4.56758 4.57711 4.71907 4.74313 4.81992 4.87130 4.94999 4.97937 5.06117 5.09307 5.15136 5.19439 5.20905 5.28150 5.33467 5.36557 5.47587 5.51926 5.60122 5.66867 5.80243 5.88922 6.15128 6.29814 6.61366 6.70081 6.72838 6.78181 7.61179 8.92839 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.012614 C = 0.009381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.226260 B = 2219.267671 C = 2984.151033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C 0.192 3.808 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.060 0.940 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 1.086 2.914 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.292 1.292 13 N -0.515 5.515 14 C 0.050 3.950 15 C -0.117 4.117 16 H 0.100 0.900 17 C 0.054 3.946 18 N -0.684 5.684 19 C 0.034 3.966 20 C -0.116 4.116 21 H 0.097 0.903 22 C 0.114 3.886 23 C -0.166 4.166 24 C -0.118 4.118 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.344 0.656 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 5.202 11.586 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.085 3.915 4 H 0.041 0.959 5 C -0.628 4.628 6 H 0.078 0.922 7 C -0.215 4.215 8 N -0.575 5.575 9 Si 0.912 3.088 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.219 1.219 13 N -0.238 5.238 14 C -0.078 4.078 15 C -0.138 4.138 16 H 0.118 0.882 17 C -0.076 4.076 18 N -0.311 5.311 19 C -0.095 4.095 20 C -0.137 4.137 21 H 0.115 0.885 22 C 0.024 3.976 23 C -0.224 4.224 24 C -0.177 4.177 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.927 4.649 10.284 11.324 hybrid contribution -1.294 0.322 0.599 1.462 sum -2.221 4.971 10.882 12.168 Atomic orbital electron populations 1.21586 0.95829 1.00124 1.01018 1.21497 0.95121 0.98767 0.98555 1.19499 0.92910 0.90440 0.88699 0.95906 1.22630 0.93305 1.52184 0.94663 0.92244 1.26434 1.08555 0.94010 0.92503 1.70843 1.07326 1.48726 1.30577 0.83307 0.72538 0.77368 0.75602 1.20490 1.20316 1.21861 1.63291 1.54226 1.02505 1.03762 1.22837 0.97183 0.96679 0.91074 1.23288 0.98226 0.94626 0.97650 0.88209 1.22755 0.90093 0.95920 0.98811 1.62826 1.49344 1.12333 1.06642 1.23715 0.90527 1.01592 0.93659 1.23417 0.96408 0.98504 0.95346 0.88517 1.21158 0.94070 0.88583 0.93780 1.22758 1.04503 0.98784 0.96307 1.21718 0.95992 0.98801 1.01139 0.93262 0.92029 0.94859 0.95848 0.94115 0.92975 0.92488 0.93274 0.89602 0.92500 0.84020 0.89393 0.91110 0.95940 0.94556 0.88314 0.92256 0.91949 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.79 71.98 0.70 -4.14 16 2 C -0.10 -4.48 5.33 30.59 0.16 -4.32 16 3 C 0.19 8.88 0.95 44.17 0.04 8.92 16 4 H 0.02 1.21 4.53 -2.39 -0.01 1.20 16 5 C -0.59 -29.28 3.91 25.60 0.10 -29.18 16 6 H 0.06 3.02 4.31 -2.91 -0.01 3.01 16 7 C -0.01 -0.78 4.97 84.65 0.42 -0.36 16 8 N -0.94 -54.13 13.61 21.45 0.29 -53.84 16 9 Si 1.09 49.75 29.90 68.60 2.05 51.80 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 N -0.51 -20.25 4.09 -822.87 -3.36 -23.61 16 14 C 0.05 1.83 4.85 86.65 0.42 2.25 16 15 C -0.12 -3.44 4.12 -9.18 -0.04 -3.47 16 16 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 17 C 0.05 1.51 7.07 86.51 0.61 2.12 16 18 N -0.68 -19.94 7.53 -499.88 -3.76 -23.71 16 19 C 0.03 1.12 5.75 86.30 0.50 1.61 16 20 C -0.12 -3.54 3.40 -9.32 -0.03 -3.57 16 21 H 0.10 2.54 7.86 -2.39 -0.02 2.52 16 22 C 0.11 4.11 0.98 3.59 0.00 4.11 16 23 C -0.17 -6.95 6.19 71.98 0.45 -6.50 16 24 C -0.12 -3.71 8.68 71.98 0.62 -3.09 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.06 2.24 7.72 -2.39 -0.02 2.22 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.02 1.14 8.04 -2.39 -0.02 1.12 16 29 H 0.04 1.78 7.44 -2.38 -0.02 1.76 16 30 H 0.26 15.26 6.58 -92.71 -0.61 14.65 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.09 4.20 -2.39 -0.01 2.08 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.83 7.18 -2.38 -0.02 1.81 16 35 H 0.34 7.99 8.94 -89.69 -0.80 7.18 16 36 H 0.09 3.68 3.53 -2.39 -0.01 3.67 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.02 1.05 6.14 -2.39 -0.01 1.03 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 4.61 2.79 -2.39 -0.01 4.60 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -56.40 303.12 -0.46 -56.86 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.36 Total: 28.11 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.96 Total: -35.61 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -6.83 Total: -101.16 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -56.40 -0.46 -56.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251365979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.968 kcal (2) G-P(sol) polarization free energy of solvation -56.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds