Wall clock time and date at job start Mon Mar 30 2020 04:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47259 * 2 1 4 4 H 1.08998 * 109.47397 * 310.48300 * 3 2 1 5 5 C 1.50699 * 109.47354 * 190.48569 * 3 2 1 6 6 H 1.08005 * 120.00455 * 240.00816 * 5 3 2 7 7 C 1.37881 * 120.00149 * 59.99404 * 5 3 2 8 8 N 1.31519 * 119.99437 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47237 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47077 * 120.00643 * 9 7 5 12 12 H 1.48498 * 109.47196 * 240.00823 * 9 7 5 13 13 N 1.46907 * 109.47307 * 70.48756 * 3 2 1 14 14 C 1.50188 * 110.99501 * 307.13949 * 13 3 2 15 15 C 1.50748 * 102.14185 * 213.03686 * 14 13 3 16 16 H 1.09003 * 109.76154 * 290.87778 * 15 14 13 17 17 C 1.50127 * 126.82758 * 155.02096 * 15 14 13 18 18 N 1.49702 * 104.74000 * 216.07668 * 17 15 14 19 19 C 1.49105 * 107.49833 * 7.33923 * 18 17 15 20 20 C 1.50754 * 102.65499 * 25.52992 * 19 18 17 21 21 H 1.09001 * 110.06140 * 68.86665 * 20 19 18 22 22 C 1.49697 * 111.00345 * 187.45704 * 13 3 2 23 23 C 1.53006 * 110.38141 * 355.39503 * 22 13 3 24 24 C 1.52996 * 110.47976 * 233.07654 * 22 13 3 25 25 H 1.09000 * 109.47220 * 281.13462 * 1 2 3 26 26 H 1.08999 * 109.47072 * 41.13541 * 1 2 3 27 27 H 1.09003 * 109.47116 * 161.13447 * 1 2 3 28 28 H 1.09004 * 109.46747 * 239.99740 * 2 1 3 29 29 H 1.09001 * 109.46951 * 120.00040 * 2 1 3 30 30 H 0.97000 * 119.99520 * 179.97438 * 8 7 5 31 31 H 1.08995 * 110.86713 * 331.19830 * 14 13 3 32 32 H 1.08996 * 110.87098 * 94.66805 * 14 13 3 33 33 H 1.08997 * 110.38695 * 334.89706 * 17 15 14 34 34 H 1.09003 * 110.38123 * 97.14838 * 17 15 14 35 35 H 1.00903 * 110.99792 * 245.78825 * 18 17 15 36 36 H 1.09004 * 110.94387 * 267.05418 * 19 18 17 37 37 H 1.09002 * 110.31525 * 143.72020 * 19 18 17 38 38 H 1.09000 * 109.46810 * 167.93872 * 23 22 13 39 39 H 1.08998 * 109.47413 * 287.93111 * 23 22 13 40 40 H 1.08999 * 109.47468 * 47.93966 * 23 22 13 41 41 H 1.09001 * 109.47120 * 304.62101 * 24 22 13 42 42 H 1.08997 * 109.47393 * 64.62482 * 24 22 13 43 43 H 1.09004 * 109.47151 * 184.62494 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5322 2.0074 -0.7816 5 6 3.5246 1.4504 -0.2586 6 1 4.1982 1.8707 0.4737 7 6 4.0233 0.9207 -1.4298 8 7 3.2031 0.4090 -2.3216 9 14 5.8636 0.9299 -1.7501 10 1 6.5631 1.5567 -0.5999 11 1 6.3433 -0.4651 -1.9201 12 1 6.1474 1.7049 -2.9846 13 7 1.7671 2.0584 1.3055 14 6 0.3189 1.9141 1.6763 15 6 0.0620 3.1820 2.4503 16 1 0.5983 3.1500 3.3987 17 6 -1.2592 3.8698 2.6376 18 7 -0.9337 5.3309 2.6211 19 6 0.5041 5.4657 2.2500 20 6 0.7627 4.2040 1.4665 21 1 0.2264 4.2363 0.5181 22 6 2.0872 3.5206 1.2863 23 6 2.7108 3.9120 -0.0550 24 6 3.0316 3.8769 2.4360 25 1 -0.3634 0.1985 1.0083 26 1 -0.3633 0.7740 -0.6760 27 1 -0.3633 -0.9725 -0.3323 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5539 0.0367 -3.1458 31 1 -0.3074 1.8694 0.7854 32 1 0.1640 1.0353 2.3022 33 1 -1.9356 3.6223 1.8195 34 1 -1.7016 3.5884 3.5932 35 1 -1.1160 5.7522 3.5197 36 1 1.1338 5.5067 3.1389 37 1 0.6530 6.3473 1.6265 38 1 2.7405 4.9984 -0.1385 39 1 3.7243 3.5153 -0.1141 40 1 2.1118 3.5014 -0.8678 41 1 2.5919 3.5558 3.3803 42 1 3.9874 3.3736 2.2905 43 1 3.1884 4.9554 2.4565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251365981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:23 Heat of formation + Delta-G solvation = 54.421131 kcal Electronic energy + Delta-G solvation = -20871.299732 eV Core-core repulsion = 18146.045305 eV Total energy + Delta-G solvation = -2725.254427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66279 -36.78129 -33.82634 -32.68461 -30.84533 -29.20663 -27.90293 -26.98294 -25.99341 -24.24421 -22.53472 -21.58371 -19.90654 -19.40241 -17.80255 -16.59935 -16.04538 -15.42887 -14.96128 -14.34054 -13.91881 -13.52942 -13.22165 -13.00895 -12.79865 -12.66407 -12.15593 -11.86453 -11.72129 -11.58958 -11.42636 -11.12326 -11.07457 -10.84355 -10.76682 -10.56996 -10.44019 -10.33707 -10.01133 -9.67124 -9.58491 -9.35218 -9.17224 -8.82459 -8.44270 -8.33308 -7.14541 -5.98549 -3.97914 3.29613 3.38444 3.41805 4.25564 4.33711 4.42520 4.78399 4.99420 5.30461 5.34123 5.48637 5.68012 5.72603 5.82349 5.90116 5.92818 6.02858 6.05641 6.20325 6.26023 6.29601 6.34040 6.37803 6.49019 6.52372 6.57149 6.59947 6.64985 6.77353 6.80592 6.94491 7.01631 7.16217 7.25066 7.37485 7.42848 7.63404 7.71122 7.87405 8.20794 8.37152 8.57076 9.02910 9.60598 11.07401 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027804 B = 0.008002 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.820041 B = 3498.175378 C = 4144.045476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C 0.209 3.791 4 H 0.009 0.991 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.508 5.508 14 C 0.053 3.947 15 C -0.150 4.150 16 H 0.074 0.926 17 C 0.063 3.937 18 N -0.682 5.682 19 C 0.064 3.936 20 C -0.124 4.124 21 H 0.076 0.924 22 C 0.124 3.876 23 C -0.153 4.153 24 C -0.121 4.121 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.029 0.971 28 H 0.098 0.902 29 H 0.038 0.962 30 H 0.259 0.741 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.332 0.668 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 6.237 8.319 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.156 4.156 3 C 0.103 3.897 4 H 0.026 0.974 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.233 5.233 14 C -0.075 4.075 15 C -0.170 4.170 16 H 0.092 0.908 17 C -0.066 4.066 18 N -0.310 5.310 19 C -0.065 4.065 20 C -0.144 4.144 21 H 0.094 0.906 22 C 0.034 3.966 23 C -0.210 4.210 24 C -0.179 4.179 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.610 6.016 7.835 11.360 hybrid contribution 0.863 -0.017 -0.064 0.865 sum -4.747 5.999 7.771 10.904 Atomic orbital electron populations 1.22522 0.99773 0.99317 1.00457 1.21633 0.91431 0.99954 1.02584 1.19541 0.95929 0.90474 0.83754 0.97365 1.21116 0.91487 1.37279 1.02469 0.91805 1.24885 0.97491 0.95816 0.96343 1.69889 1.33804 1.40609 1.08931 0.86572 0.85948 0.77658 0.78072 1.19776 1.21162 1.21236 1.65450 1.14586 1.09737 1.33519 1.22825 0.92110 0.94632 0.97892 1.22733 0.96723 0.97811 0.99737 0.90759 1.21802 0.96431 0.87369 1.00985 1.63304 1.19866 1.13189 1.34667 1.21887 0.88098 0.98006 0.98543 1.22635 0.98746 0.94407 0.98660 0.90608 1.20682 0.91739 0.88380 0.95806 1.22451 1.05028 0.97391 0.96161 1.21696 0.99898 0.98967 0.97361 0.92637 0.94006 0.95224 0.88419 0.94286 0.93141 0.92284 0.90956 0.90762 0.92679 0.85384 0.93425 0.90647 0.95695 0.88919 0.91589 0.93650 0.92153 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.22 37.16 0.31 -2.92 16 2 C -0.12 -2.76 5.26 -26.73 -0.14 -2.90 16 3 C 0.21 4.99 1.16 -68.87 -0.08 4.91 16 4 H 0.01 0.24 5.88 -51.93 -0.31 -0.07 16 5 C -0.48 -12.54 5.64 -34.44 -0.19 -12.74 16 6 H 0.06 1.68 6.77 -52.48 -0.36 1.33 16 7 C 0.06 1.46 5.26 -17.82 -0.09 1.37 16 8 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.51 -10.49 4.81 -210.47 -1.01 -11.50 16 14 C 0.05 0.95 4.24 -3.11 -0.01 0.93 16 15 C -0.15 -2.31 2.84 -90.30 -0.26 -2.56 16 16 H 0.07 1.17 6.90 -51.93 -0.36 0.81 16 17 C 0.06 0.83 7.45 -3.69 -0.03 0.81 16 18 N -0.68 -8.81 7.55 -112.67 -0.85 -9.66 16 19 C 0.06 0.88 6.80 -3.72 -0.03 0.85 16 20 C -0.12 -2.04 2.14 -90.30 -0.19 -2.24 16 21 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 22 C 0.12 2.30 0.86 -131.46 -0.11 2.19 16 23 C -0.15 -3.12 6.95 37.16 0.26 -2.86 16 24 C -0.12 -2.06 7.98 37.16 0.30 -1.76 16 25 H 0.05 0.98 4.55 -51.93 -0.24 0.74 16 26 H 0.04 0.84 7.11 -51.93 -0.37 0.47 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 2.58 5.86 -51.93 -0.30 2.27 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.06 1.10 5.15 -51.93 -0.27 0.83 16 32 H 0.07 1.26 6.92 -51.93 -0.36 0.90 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.33 3.53 8.93 -39.29 -0.35 3.18 16 36 H 0.05 0.62 7.17 -51.93 -0.37 0.25 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 2.07 5.37 -51.93 -0.28 1.79 16 40 H 0.07 1.51 5.66 -51.93 -0.29 1.22 16 41 H 0.04 0.73 6.92 -51.93 -0.36 0.37 16 42 H 0.06 1.11 8.02 -51.93 -0.42 0.69 16 43 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -26.63 303.33 -9.07 -35.70 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.11 Total: 5.99 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.28 Total: -16.92 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -1.24 Total: -45.22 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.63 -9.07 -35.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251365981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.125 kcal (2) G-P(sol) polarization free energy of solvation -26.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds