Wall clock time and date at job start Mon Mar 30 2020 04:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47259 * 2 1 4 4 H 1.08998 * 109.47397 * 310.48300 * 3 2 1 5 5 C 1.50699 * 109.47354 * 190.48569 * 3 2 1 6 6 H 1.08005 * 120.00455 * 240.00816 * 5 3 2 7 7 C 1.37881 * 120.00149 * 59.99404 * 5 3 2 8 8 N 1.31519 * 119.99437 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47237 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47077 * 120.00643 * 9 7 5 12 12 H 1.48498 * 109.47196 * 240.00823 * 9 7 5 13 13 N 1.46907 * 109.47307 * 70.48756 * 3 2 1 14 14 C 1.50188 * 110.99501 * 307.13949 * 13 3 2 15 15 C 1.50748 * 102.14185 * 213.03686 * 14 13 3 16 16 H 1.09003 * 109.76154 * 290.87778 * 15 14 13 17 17 C 1.50127 * 126.82758 * 155.02096 * 15 14 13 18 18 N 1.49702 * 104.74000 * 216.07668 * 17 15 14 19 19 C 1.49105 * 107.49833 * 7.33923 * 18 17 15 20 20 C 1.50754 * 102.65499 * 25.52992 * 19 18 17 21 21 H 1.09001 * 110.06140 * 68.86665 * 20 19 18 22 22 C 1.49697 * 111.00345 * 187.45704 * 13 3 2 23 23 C 1.53006 * 110.38141 * 355.39503 * 22 13 3 24 24 C 1.52996 * 110.47976 * 233.07654 * 22 13 3 25 25 H 1.09000 * 109.47220 * 281.13462 * 1 2 3 26 26 H 1.08999 * 109.47072 * 41.13541 * 1 2 3 27 27 H 1.09003 * 109.47116 * 161.13447 * 1 2 3 28 28 H 1.09004 * 109.46747 * 239.99740 * 2 1 3 29 29 H 1.09001 * 109.46951 * 120.00040 * 2 1 3 30 30 H 0.97000 * 119.99520 * 179.97438 * 8 7 5 31 31 H 1.08995 * 110.86713 * 331.19830 * 14 13 3 32 32 H 1.08996 * 110.87098 * 94.66805 * 14 13 3 33 33 H 1.08997 * 110.38695 * 334.89706 * 17 15 14 34 34 H 1.09003 * 110.38123 * 97.14838 * 17 15 14 35 35 H 1.00903 * 110.99792 * 245.78825 * 18 17 15 36 36 H 1.09004 * 110.94387 * 267.05418 * 19 18 17 37 37 H 1.09002 * 110.31525 * 143.72020 * 19 18 17 38 38 H 1.09000 * 109.46810 * 167.93872 * 23 22 13 39 39 H 1.08998 * 109.47413 * 287.93111 * 23 22 13 40 40 H 1.08999 * 109.47468 * 47.93966 * 23 22 13 41 41 H 1.09001 * 109.47120 * 304.62101 * 24 22 13 42 42 H 1.08997 * 109.47393 * 64.62482 * 24 22 13 43 43 H 1.09004 * 109.47151 * 184.62494 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5322 2.0074 -0.7816 5 6 3.5246 1.4504 -0.2586 6 1 4.1982 1.8707 0.4737 7 6 4.0233 0.9207 -1.4298 8 7 3.2031 0.4090 -2.3216 9 14 5.8636 0.9299 -1.7501 10 1 6.5631 1.5567 -0.5999 11 1 6.3433 -0.4651 -1.9201 12 1 6.1474 1.7049 -2.9846 13 7 1.7671 2.0584 1.3055 14 6 0.3189 1.9141 1.6763 15 6 0.0620 3.1820 2.4503 16 1 0.5983 3.1500 3.3987 17 6 -1.2592 3.8698 2.6376 18 7 -0.9337 5.3309 2.6211 19 6 0.5041 5.4657 2.2500 20 6 0.7627 4.2040 1.4665 21 1 0.2264 4.2363 0.5181 22 6 2.0872 3.5206 1.2863 23 6 2.7108 3.9120 -0.0550 24 6 3.0316 3.8769 2.4360 25 1 -0.3634 0.1985 1.0083 26 1 -0.3633 0.7740 -0.6760 27 1 -0.3633 -0.9725 -0.3323 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5539 0.0367 -3.1458 31 1 -0.3074 1.8694 0.7854 32 1 0.1640 1.0353 2.3022 33 1 -1.9356 3.6223 1.8195 34 1 -1.7016 3.5884 3.5932 35 1 -1.1160 5.7522 3.5197 36 1 1.1338 5.5067 3.1389 37 1 0.6530 6.3473 1.6265 38 1 2.7405 4.9984 -0.1385 39 1 3.7243 3.5153 -0.1141 40 1 2.1118 3.5014 -0.8678 41 1 2.5919 3.5558 3.3803 42 1 3.9874 3.3736 2.2905 43 1 3.1884 4.9554 2.4565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251365981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:22 Heat of formation + Delta-G solvation = 36.009361 kcal Electronic energy + Delta-G solvation = -20872.098126 eV Core-core repulsion = 18146.045305 eV Total energy + Delta-G solvation = -2726.052821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05433 -38.24629 -35.45076 -34.45235 -32.45726 -30.78360 -29.15770 -28.49435 -27.65885 -25.89331 -24.18268 -22.98124 -21.32037 -21.01143 -19.24045 -18.46192 -17.45580 -16.94423 -16.53918 -15.99379 -15.32307 -15.08830 -14.74521 -14.49930 -14.29774 -14.14315 -13.58842 -13.45896 -13.18446 -13.03219 -13.01372 -12.79905 -12.63954 -12.47619 -12.33443 -12.29946 -12.11980 -11.95890 -11.49193 -11.39837 -11.30679 -10.92474 -10.86882 -10.58901 -10.36220 -9.45781 -8.83115 -8.03734 -6.07962 1.39438 1.42959 1.52611 2.44416 3.07835 3.14653 3.23038 3.34051 3.76524 4.07050 4.29800 4.41062 4.46110 4.49850 4.51124 4.53379 4.61579 4.67740 4.77091 4.82576 4.83688 4.90031 4.97017 5.02297 5.07581 5.10470 5.12307 5.18986 5.24881 5.28449 5.37486 5.42643 5.60103 5.63720 5.70107 5.75114 5.86088 5.89835 6.40788 6.45247 6.51267 6.72484 6.99736 7.53431 9.01318 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027804 B = 0.008002 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.820041 B = 3498.175378 C = 4144.045476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.221 3.779 4 H -0.026 1.026 5 C -0.485 4.485 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.520 5.520 14 C 0.051 3.949 15 C -0.136 4.136 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.685 5.685 19 C 0.071 3.929 20 C -0.122 4.122 21 H 0.048 0.952 22 C 0.119 3.881 23 C -0.143 4.143 24 C -0.114 4.114 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.257 0.743 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.350 0.650 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 7.460 10.610 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.114 3.886 4 H -0.009 1.009 5 C -0.524 4.524 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.562 5.562 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.245 5.245 14 C -0.076 4.076 15 C -0.156 4.156 16 H 0.099 0.901 17 C -0.061 4.061 18 N -0.315 5.315 19 C -0.058 4.058 20 C -0.142 4.142 21 H 0.067 0.933 22 C 0.029 3.971 23 C -0.201 4.201 24 C -0.171 4.171 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.166 0.834 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.235 7.255 10.150 13.948 hybrid contribution 1.041 -0.373 -0.774 1.350 sum -5.193 6.883 9.376 12.738 Atomic orbital electron populations 1.22382 0.96885 0.99684 1.01811 1.21489 0.94066 0.99216 1.00591 1.19221 0.94427 0.90490 0.84472 1.00889 1.21313 0.92628 1.36329 1.02102 0.92594 1.25543 1.01035 0.95906 0.96397 1.70022 1.35258 1.41655 1.09246 0.85695 0.81771 0.77459 0.77906 1.19155 1.21109 1.21142 1.65398 1.16764 1.11252 1.31083 1.22802 0.90246 0.96597 0.97995 1.22644 0.98250 0.95730 0.98996 0.90118 1.21787 0.94928 0.87143 1.02231 1.63224 1.19139 1.12971 1.36127 1.21841 0.88908 0.96349 0.98699 1.22468 0.96848 0.96660 0.98227 0.93317 1.20756 0.93341 0.87578 0.95376 1.22272 1.02885 0.98465 0.96436 1.21625 0.98283 1.00398 0.96826 0.90132 0.95082 0.93995 0.91702 0.94803 0.93383 0.93318 0.90114 0.91581 0.89867 0.83409 0.91738 0.90338 0.93456 0.91337 0.95026 0.92426 0.94145 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 8.22 71.98 0.59 -5.35 16 2 C -0.11 -5.53 5.26 30.59 0.16 -5.37 16 3 C 0.22 10.91 1.16 44.17 0.05 10.96 16 4 H -0.03 -1.46 5.88 -2.39 -0.01 -1.48 16 5 C -0.49 -25.90 5.64 25.60 0.14 -25.76 16 6 H 0.06 3.02 6.77 -2.91 -0.02 3.00 16 7 C 0.01 0.47 5.26 84.65 0.45 0.92 16 8 N -0.92 -52.93 11.30 21.45 0.24 -52.69 16 9 Si 0.94 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.52 -21.48 4.81 -819.78 -3.94 -25.42 16 14 C 0.05 1.76 4.24 84.93 0.36 2.12 16 15 C -0.14 -3.83 2.84 -10.59 -0.03 -3.86 16 16 H 0.08 2.22 6.90 -2.39 -0.02 2.21 16 17 C 0.07 1.57 7.45 84.83 0.63 2.20 16 18 N -0.68 -15.20 7.55 -510.39 -3.85 -19.05 16 19 C 0.07 1.73 6.80 85.15 0.58 2.30 16 20 C -0.12 -3.81 2.14 -10.59 -0.02 -3.83 16 21 H 0.05 1.79 7.98 -2.39 -0.02 1.77 16 22 C 0.12 4.35 0.86 2.06 0.00 4.35 16 23 C -0.14 -5.96 6.95 71.98 0.50 -5.46 16 24 C -0.11 -3.61 7.98 71.98 0.57 -3.04 16 25 H 0.08 2.75 4.55 -2.39 -0.01 2.74 16 26 H 0.03 1.27 7.11 -2.39 -0.02 1.25 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 3.56 5.86 -2.39 -0.01 3.55 16 29 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.05 1.80 5.15 -2.39 -0.01 1.78 16 32 H 0.08 2.64 6.92 -2.39 -0.02 2.63 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.35 5.88 8.93 -89.69 -0.80 5.08 16 36 H 0.06 1.38 7.17 -2.39 -0.02 1.36 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 3.15 5.37 -2.39 -0.01 3.14 16 40 H 0.03 1.51 5.66 -2.39 -0.01 1.50 16 41 H 0.06 1.69 6.92 -2.39 -0.02 1.67 16 42 H 0.04 1.43 8.02 -2.39 -0.02 1.42 16 43 H 0.07 1.84 7.65 -2.38 -0.02 1.82 16 Total: -1.00 -59.32 303.33 -1.34 -60.66 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.20 Total: 20.46 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.99 Total: -29.83 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -7.55 Total: -97.16 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -59.32 -1.34 -60.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251365981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.671 kcal (2) G-P(sol) polarization free energy of solvation -59.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds