Wall clock time and date at job start Mon Mar 30 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09005 * 109.47187 * 181.98680 * 3 2 1 5 5 C 1.50695 * 109.47439 * 61.98693 * 3 2 1 6 6 H 1.07999 * 120.00380 * 245.07926 * 5 3 2 7 7 C 1.37879 * 119.99816 * 65.08141 * 5 3 2 8 8 N 1.31516 * 119.99651 * 195.85368 * 7 5 3 9 9 Si 1.86802 * 120.00032 * 15.85429 * 7 5 3 10 10 H 1.48503 * 109.46861 * 94.67968 * 9 7 5 11 11 H 1.48503 * 109.46768 * 214.67223 * 9 7 5 12 12 H 1.48495 * 109.46774 * 334.67538 * 9 7 5 13 13 N 1.46902 * 109.47301 * 301.98228 * 3 2 1 14 14 C 1.47908 * 110.99644 * 79.13912 * 13 3 2 15 15 C 1.53996 * 107.05716 * 214.15815 * 14 13 3 16 16 C 1.54595 * 105.13850 * 1.22539 * 15 14 13 17 17 C 1.48532 * 111.00212 * 321.74580 * 13 3 2 18 18 H 1.09004 * 110.66552 * 41.27891 * 17 13 3 19 19 C 1.52998 * 110.66687 * 278.15435 * 17 13 3 20 20 H 1.09010 * 109.87780 * 295.92480 * 19 17 13 21 21 C 1.54317 * 109.89183 * 174.89553 * 19 17 13 22 22 C 1.55400 * 102.89809 * 218.40668 * 21 19 17 23 23 C 1.54905 * 101.74209 * 35.47505 * 22 21 19 24 24 N 1.47444 * 109.89234 * 56.94967 * 19 17 13 25 25 H 1.09007 * 109.46779 * 67.04274 * 1 2 3 26 26 H 1.08997 * 109.47262 * 187.04129 * 1 2 3 27 27 H 1.09002 * 109.47218 * 307.04959 * 1 2 3 28 28 H 1.08998 * 109.46535 * 119.99749 * 2 1 3 29 29 H 1.09000 * 109.46934 * 239.99970 * 2 1 3 30 30 H 0.97003 * 119.99424 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.91291 * 333.50766 * 14 13 3 32 32 H 1.08998 * 109.91720 * 94.60488 * 14 13 3 33 33 H 1.08997 * 110.30758 * 120.14096 * 15 14 13 34 34 H 1.09000 * 110.30558 * 242.21060 * 15 14 13 35 35 H 1.09002 * 110.72014 * 140.31750 * 16 15 14 36 36 H 1.09004 * 110.71939 * 263.59877 * 16 15 14 37 37 H 1.09007 * 110.70102 * 336.68452 * 21 19 17 38 38 H 1.08992 * 110.70903 * 99.92025 * 21 19 17 39 39 H 1.09000 * 110.86928 * 277.39017 * 22 21 19 40 40 H 1.09003 * 111.05607 * 153.64564 * 22 21 19 41 41 H 1.09001 * 110.37222 * 204.18826 * 23 22 21 42 42 H 1.09006 * 110.37373 * 81.85511 * 23 22 21 43 43 H 1.00894 * 111.00274 * 240.68873 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0356 5 6 1.5783 2.1386 1.2543 6 1 0.8889 2.9673 1.1894 7 6 2.0362 1.7174 2.4848 8 7 1.4174 2.0966 3.5816 9 14 3.5352 0.6081 2.5939 10 1 4.7484 1.4358 2.8140 11 1 3.3694 -0.3380 3.7265 12 1 3.6794 -0.1550 1.3283 13 7 1.5116 2.1487 -1.1748 14 6 0.1114 2.5709 -0.9539 15 6 -0.6086 2.4759 -2.3118 16 6 0.4578 1.9470 -3.2981 17 6 1.4833 1.2581 -2.3631 18 1 1.1428 0.2599 -2.0877 19 6 2.8614 1.1966 -3.0249 20 1 3.1327 2.1804 -3.4080 21 6 2.8451 0.1706 -4.1774 22 6 4.2408 -0.5030 -4.0619 23 6 4.4543 -0.5247 -2.5278 24 7 3.8678 0.7443 -2.0469 25 1 -0.3633 0.4009 -0.9464 26 1 -0.3633 -1.0199 0.1260 27 1 -0.3634 0.6192 0.8202 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.7397 1.8006 4.4472 31 1 -0.3669 1.9081 -0.2328 32 1 0.0864 3.5974 -0.5880 33 1 -1.4444 1.7790 -2.2488 34 1 -0.9597 3.4596 -2.6235 35 1 0.0205 1.2260 -3.9889 36 1 0.9229 2.7699 -3.8410 37 1 2.0510 -0.5616 -4.0303 38 1 2.7348 0.6724 -5.1386 39 1 5.0045 0.0993 -4.5540 40 1 4.2223 -1.5144 -4.4680 41 1 5.5181 -0.5640 -2.2933 42 1 3.9356 -1.3748 -2.0845 43 1 4.5816 1.4445 -1.9124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251376536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:33 Heat of formation + Delta-G solvation = 31.824116 kcal Electronic energy + Delta-G solvation = -20916.192302 eV Core-core repulsion = 18189.957995 eV Total energy + Delta-G solvation = -2726.234307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70193 -37.45561 -33.97112 -31.64323 -30.28538 -29.92775 -29.22712 -26.50361 -26.37774 -23.19394 -21.61030 -21.04120 -19.99846 -19.72568 -18.56037 -16.66675 -15.98384 -15.53838 -15.19593 -14.44207 -14.12713 -13.48188 -13.37160 -13.21284 -12.85783 -12.63627 -12.32443 -12.19604 -11.63490 -11.39480 -11.16967 -11.16562 -10.99583 -10.84749 -10.75188 -10.59381 -10.38531 -10.26059 -10.10348 -9.92834 -9.75657 -9.48892 -9.23577 -8.86999 -8.24219 -7.88796 -6.94306 -5.95302 -3.85688 3.41032 3.50337 3.59118 4.42780 4.58860 4.76813 4.82970 5.10257 5.24205 5.35189 5.38689 5.44728 5.55634 5.62252 5.72256 5.75846 5.87945 5.96924 5.98645 6.12840 6.14613 6.21797 6.23347 6.29594 6.33007 6.39209 6.46502 6.49884 6.71618 6.85000 6.94668 7.03534 7.21498 7.23216 7.31622 7.43812 7.58828 7.78152 7.90040 8.17586 8.46163 8.84259 9.15556 9.73452 11.17344 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.010302 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.735386 B = 2717.154225 C = 3664.581624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.189 3.811 4 H 0.060 0.940 5 C -0.513 4.513 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.860 3.140 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.245 1.245 13 N -0.492 5.492 14 C 0.025 3.975 15 C -0.134 4.134 16 C -0.119 4.119 17 C 0.063 3.937 18 H 0.067 0.933 19 C 0.099 3.901 20 H 0.060 0.940 21 C -0.134 4.134 22 C -0.154 4.154 23 C 0.047 3.953 24 N -0.664 5.664 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.260 0.740 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -4.555 -15.276 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.080 3.920 4 H 0.078 0.922 5 C -0.551 4.551 6 H 0.095 0.905 7 C -0.127 4.127 8 N -0.538 5.538 9 Si 0.687 3.313 10 H -0.212 1.212 11 H -0.222 1.222 12 H -0.169 1.169 13 N -0.215 5.215 14 C -0.102 4.102 15 C -0.173 4.173 16 C -0.157 4.157 17 C -0.047 4.047 18 H 0.085 0.915 19 C -0.011 4.011 20 H 0.078 0.922 21 C -0.173 4.173 22 C -0.193 4.193 23 C -0.082 4.082 24 N -0.292 5.292 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.038 -4.396 -14.675 15.454 hybrid contribution 0.860 -0.997 -0.230 1.337 sum 2.898 -5.393 -14.904 16.113 Atomic orbital electron populations 1.22148 0.97973 0.99099 1.01788 1.22347 0.94758 1.01639 0.99286 1.19770 0.96754 0.87722 0.87717 0.92192 1.21227 1.27793 1.17116 0.88916 0.90507 1.24855 0.96493 0.95677 0.95682 1.69994 1.39030 1.46843 0.97924 0.87212 0.84521 0.81240 0.78311 1.21161 1.22217 1.16885 1.64839 1.17442 1.35188 1.04036 1.23193 0.90041 1.01862 0.95131 1.22468 0.97720 1.00164 0.96913 1.22493 0.96610 0.99402 0.97235 1.23005 0.92585 0.97011 0.92051 0.91502 1.22047 0.93011 0.96603 0.89445 0.92182 1.22866 0.97161 0.98665 0.98600 1.23196 0.97242 1.00716 0.98170 1.22878 0.98553 0.94630 0.92159 1.61606 1.16481 1.05151 1.45994 0.93302 0.95890 0.90574 0.93496 0.93729 0.93080 0.90100 0.91996 0.92639 0.92319 0.92590 0.91777 0.91199 0.91499 0.91884 0.91366 0.92093 0.90997 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.81 37.16 0.29 -2.88 16 2 C -0.14 -3.11 4.38 -26.73 -0.12 -3.22 16 3 C 0.19 4.38 1.52 -68.87 -0.11 4.28 16 4 H 0.06 1.46 5.15 -51.93 -0.27 1.20 16 5 C -0.51 -14.12 7.04 -34.44 -0.24 -14.36 16 6 H 0.08 2.30 6.36 -52.49 -0.33 1.97 16 7 C 0.07 2.13 5.34 -17.82 -0.10 2.04 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.86 21.65 25.81 -169.99 -4.39 17.26 16 10 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 12 H -0.25 -5.86 5.50 56.52 0.31 -5.55 16 13 N -0.49 -10.09 5.13 -216.10 -1.11 -11.20 16 14 C 0.03 0.51 4.28 -2.75 -0.01 0.50 16 15 C -0.13 -2.13 6.35 -25.37 -0.16 -2.29 16 16 C -0.12 -1.75 6.23 -24.87 -0.15 -1.90 16 17 C 0.06 1.06 1.15 -65.79 -0.08 0.99 16 18 H 0.07 1.22 4.10 -51.93 -0.21 1.01 16 19 C 0.10 1.47 3.12 -66.73 -0.21 1.26 16 20 H 0.06 0.90 8.04 -51.92 -0.42 0.48 16 21 C -0.13 -1.61 6.22 -24.77 -0.15 -1.76 16 22 C -0.15 -1.69 7.08 -24.45 -0.17 -1.87 16 23 C 0.05 0.62 7.58 -2.30 -0.02 0.61 16 24 N -0.66 -10.45 3.97 -103.81 -0.41 -10.86 16 25 H 0.05 0.92 3.92 -51.92 -0.20 0.72 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 1.79 6.08 -51.93 -0.32 1.47 16 28 H 0.05 1.11 5.05 -51.93 -0.26 0.85 16 29 H 0.04 0.92 5.66 -51.93 -0.29 0.62 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.08 1.76 3.38 -51.93 -0.18 1.58 16 32 H 0.06 1.33 7.65 -51.93 -0.40 0.93 16 33 H 0.05 0.83 7.79 -51.93 -0.40 0.42 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 37 H 0.07 0.87 7.78 -51.92 -0.40 0.46 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.34 5.16 8.91 -39.29 -0.35 4.81 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -29.63 297.98 -8.93 -38.56 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.06 Total: 7.14 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.23 Total: -18.63 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.75 Total: -48.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.39 Total: 17.26 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.63 -8.93 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251376536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.387 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds