Wall clock time and date at job start Mon Mar 30 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 H 1.08998 * 109.47131 * 303.44590 * 3 2 1 5 5 C 1.50699 * 109.46972 * 183.45100 * 3 2 1 6 6 H 1.08000 * 119.99764 * 245.35844 * 5 3 2 7 7 C 1.37875 * 120.00507 * 65.35205 * 5 3 2 8 8 N 1.31524 * 119.99580 * 355.54763 * 7 5 3 9 9 Si 1.86794 * 120.00229 * 175.54223 * 7 5 3 10 10 H 1.48499 * 109.47222 * 95.00527 * 9 7 5 11 11 H 1.48507 * 109.47077 * 214.99920 * 9 7 5 12 12 H 1.48499 * 109.47428 * 335.00194 * 9 7 5 13 13 N 1.46903 * 109.47083 * 63.45044 * 3 2 1 14 14 C 1.47442 * 111.00097 * 65.87082 * 13 3 2 15 15 C 1.54320 * 107.23341 * 123.25665 * 14 13 3 16 16 C 1.55140 * 103.01805 * 22.28366 * 15 14 13 17 17 C 1.47842 * 110.99703 * 186.71208 * 13 3 2 18 18 H 1.08990 * 110.37852 * 332.46855 * 17 13 3 19 19 C 1.53011 * 110.37034 * 94.80792 * 17 13 3 20 20 H 1.08999 * 109.90722 * 295.52195 * 19 17 13 21 21 C 1.53994 * 109.91735 * 56.62932 * 19 17 13 22 22 C 1.54594 * 105.13955 * 120.57809 * 21 19 17 23 23 C 1.54936 * 102.92282 * 21.95584 * 22 21 19 24 24 N 1.47905 * 109.91501 * 174.21966 * 19 17 13 25 25 H 1.09003 * 109.46760 * 60.00000 * 1 2 3 26 26 H 1.09001 * 109.47158 * 300.00106 * 1 2 3 27 27 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46760 * 120.00000 * 2 1 3 29 29 H 1.09001 * 109.47158 * 239.99894 * 2 1 3 30 30 H 0.96998 * 119.99576 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.88555 * 242.66224 * 14 13 3 32 32 H 1.09000 * 109.88684 * 3.68776 * 14 13 3 33 33 H 1.08995 * 110.70190 * 140.66535 * 15 14 13 34 34 H 1.08996 * 110.70214 * 263.90100 * 15 14 13 35 35 H 1.09002 * 110.99387 * 82.43642 * 16 15 14 36 36 H 1.09001 * 110.99200 * 206.21890 * 16 15 14 37 37 H 1.08996 * 110.30672 * 239.49293 * 21 19 17 38 38 H 1.09000 * 110.30835 * 1.65773 * 21 19 17 39 39 H 1.09000 * 110.72487 * 140.31691 * 22 21 19 40 40 H 1.08999 * 110.72105 * 263.59756 * 22 21 19 41 41 H 1.08994 * 110.67113 * 81.02189 * 23 22 21 42 42 H 1.09003 * 110.67080 * 203.98728 * 23 22 21 43 43 H 1.00902 * 110.99539 * 335.82869 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6272 1.9739 -0.8575 5 6 3.5446 1.4434 -0.0855 6 1 4.1322 1.8165 0.7403 7 6 4.1711 0.9677 -1.2179 8 7 3.4606 0.4328 -2.1869 9 14 6.0288 1.0831 -1.3758 10 1 6.6437 -0.1929 -0.9298 11 1 6.3901 1.3376 -2.7936 12 1 6.5294 2.1962 -0.5299 13 7 1.6196 2.1105 1.2390 14 6 2.2720 1.5040 2.4139 15 6 3.0256 2.6310 3.1510 16 6 2.2931 3.9122 2.6726 17 6 1.9553 3.5499 1.2049 18 1 2.8188 3.7232 0.5629 19 6 0.7556 4.3652 0.7176 20 1 0.5229 4.1026 -0.3144 21 6 -0.4645 4.0917 1.6165 22 6 -0.8518 5.4693 2.2016 23 6 -0.2275 6.4632 1.1902 24 7 1.0540 5.8103 0.8189 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.9014 0.0984 -2.9836 31 1 1.5200 1.0687 3.0720 32 1 2.9734 0.7342 2.0923 33 1 2.9329 2.5145 4.2307 34 1 4.0739 2.6525 2.8531 35 1 1.3854 4.0823 3.2517 36 1 2.9519 4.7793 2.7196 37 1 -1.2863 3.6870 1.0259 38 1 -0.1974 3.4021 2.4172 39 1 -1.9353 5.5831 2.2356 40 1 -0.4175 5.6034 3.1923 41 1 -0.8688 6.5766 0.3163 42 1 -0.0474 7.4294 1.6615 43 1 1.7638 5.9850 1.5144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251376538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:35 Heat of formation + Delta-G solvation = -20.291075 kcal Electronic energy + Delta-G solvation = -20488.830105 eV Core-core repulsion = 17760.335914 eV Total energy + Delta-G solvation = -2728.494191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92186 -38.59124 -35.74620 -33.62252 -31.50392 -31.05125 -30.66774 -28.11645 -27.33900 -24.84254 -23.16655 -22.69169 -21.95366 -20.55345 -19.91390 -18.47314 -17.33735 -17.16796 -16.30686 -16.05933 -15.37333 -15.09087 -14.80674 -14.61487 -14.40189 -14.23112 -13.85067 -13.54460 -13.17389 -12.91398 -12.69972 -12.57148 -12.54061 -12.35481 -12.06720 -12.01033 -11.84261 -11.79540 -11.72955 -11.49007 -11.42186 -11.20066 -11.10560 -10.87025 -10.43361 -9.46444 -8.88897 -8.02646 -6.22440 1.34464 1.37225 1.45593 2.39713 3.16956 3.19695 3.65837 3.87502 3.91379 4.07195 4.15244 4.21090 4.32766 4.50784 4.58118 4.62280 4.67553 4.74449 4.81432 4.84622 4.92077 4.96045 5.03293 5.11509 5.12172 5.17284 5.24320 5.27224 5.32868 5.36236 5.44888 5.49329 5.52678 5.57188 5.64764 5.80379 5.96763 6.08671 6.23287 6.44309 6.55065 6.69542 7.00587 7.47217 8.93533 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.007666 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.016295 B = 3651.534646 C = 3921.053546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.511 5.511 14 C 0.047 3.953 15 C -0.131 4.131 16 C -0.116 4.116 17 C 0.074 3.926 18 H 0.028 0.972 19 C 0.097 3.903 20 H 0.039 0.961 21 C -0.126 4.126 22 C -0.149 4.149 23 C 0.042 3.958 24 N -0.684 5.684 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.259 0.741 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 8.122 11.232 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.235 5.235 14 C -0.081 4.081 15 C -0.169 4.169 16 C -0.154 4.154 17 C -0.035 4.035 18 H 0.046 0.954 19 C -0.013 4.013 20 H 0.058 0.942 21 C -0.165 4.165 22 C -0.187 4.187 23 C -0.087 4.087 24 N -0.314 5.314 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.787 8.135 10.347 14.808 hybrid contribution 2.017 -0.615 -0.162 2.115 sum -4.769 7.520 10.185 13.529 Atomic orbital electron populations 1.21556 0.96307 0.99666 1.00621 1.21402 0.94472 0.98313 0.99780 1.19093 0.91404 0.91105 0.87035 0.98624 1.22032 0.93915 1.40828 1.01354 0.92860 1.25630 1.01607 0.95025 0.95913 1.70039 1.36478 1.40721 1.08025 0.85786 0.81890 0.78272 0.77155 1.20313 1.21201 1.19697 1.63674 1.55395 1.01294 1.03110 1.22677 0.96361 0.97084 0.92015 1.22691 0.98527 0.94958 1.00742 1.22741 1.00669 0.97551 0.94439 1.22522 0.95265 0.89379 0.96355 0.95404 1.21940 0.94431 0.87124 0.97813 0.94238 1.22594 0.96710 0.97872 0.99310 1.23108 1.01972 0.94365 0.99301 1.23159 0.90274 0.97646 0.97614 1.62776 1.09553 1.07592 1.51465 0.95282 0.92138 0.93677 0.94914 0.92963 0.93156 0.91215 0.94025 0.89157 0.93383 0.89389 0.90539 0.92941 0.90543 0.89971 0.90581 0.91135 0.88908 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.79 71.98 0.70 -4.31 16 2 C -0.10 -4.85 5.17 30.60 0.16 -4.69 16 3 C 0.22 11.04 1.63 44.17 0.07 11.11 16 4 H 0.00 -0.24 8.12 -2.39 -0.02 -0.26 16 5 C -0.54 -29.26 6.14 25.60 0.16 -29.11 16 6 H 0.05 2.86 6.26 -2.91 -0.02 2.84 16 7 C 0.02 0.99 5.35 84.65 0.45 1.44 16 8 N -0.91 -53.29 11.53 21.45 0.25 -53.05 16 9 Si 0.94 44.32 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.51 -20.64 3.45 -839.98 -2.90 -23.54 16 14 C 0.05 1.72 5.32 86.65 0.46 2.18 16 15 C -0.13 -3.99 6.72 31.78 0.21 -3.78 16 16 C -0.12 -3.31 5.29 31.98 0.17 -3.14 16 17 C 0.07 2.77 2.10 45.39 0.10 2.86 16 18 H 0.03 1.29 6.89 -2.39 -0.02 1.27 16 19 C 0.10 3.31 3.52 45.06 0.16 3.47 16 20 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 21 C -0.13 -3.52 5.56 31.47 0.18 -3.35 16 22 C -0.15 -3.08 6.96 31.80 0.22 -2.85 16 23 C 0.04 0.94 7.55 86.65 0.65 1.59 16 24 N -0.68 -19.84 7.39 -480.18 -3.55 -23.39 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 2.28 7.70 -2.39 -0.02 2.26 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.03 1.52 6.79 -2.39 -0.02 1.51 16 29 H 0.05 2.85 6.27 -2.39 -0.01 2.84 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.78 5.61 -2.39 -0.01 1.77 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.62 7.75 -2.39 -0.02 1.60 16 35 H 0.09 2.19 6.08 -2.39 -0.01 2.17 16 36 H 0.08 1.96 7.56 -2.39 -0.02 1.94 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.21 6.12 -2.39 -0.01 2.19 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.38 8.00 -2.39 -0.02 1.36 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.34 8.94 6.91 -89.69 -0.62 8.32 16 Total: -1.00 -60.03 315.98 -0.13 -60.15 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.35 Total: 22.05 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.69 Total: -28.57 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -6.20 Total: -99.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -60.03 -0.13 -60.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251376538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.862 kcal (2) G-P(sol) polarization free energy of solvation -60.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds