Wall clock time and date at job start Mon Mar 30 2020 04:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47185 * 2 1 4 4 H 1.08994 * 110.02954 * 306.09161 * 3 2 1 5 5 C 1.53807 * 109.89729 * 184.95091 * 3 2 1 6 6 H 1.09001 * 113.32236 * 1.28851 * 5 3 2 7 7 C 1.54724 * 108.83873 * 127.70765 * 5 3 2 8 8 N 1.48424 * 103.61720 * 147.28761 * 7 5 3 9 9 C 1.47836 * 105.78548 * 320.80158 * 8 7 5 10 10 C 1.53809 * 107.17963 * 26.45071 * 9 8 7 11 11 H 1.08999 * 112.77421 * 120.34522 * 10 9 8 12 12 C 1.54722 * 108.83605 * 247.09429 * 10 9 8 13 13 N 1.47843 * 109.89781 * 67.23937 * 3 2 1 14 14 C 1.46901 * 110.99484 * 266.32755 * 13 3 2 15 15 C 1.53003 * 109.46920 * 184.04993 * 14 13 3 16 16 C 1.53000 * 109.47078 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47145 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99844 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99998 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00184 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99827 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47208 * 60.00550 * 21 19 17 23 23 H 1.48505 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47373 * 299.99914 * 21 19 17 25 25 H 1.08997 * 109.47444 * 291.92475 * 1 2 3 26 26 H 1.08999 * 109.47094 * 51.92999 * 1 2 3 27 27 H 1.09005 * 109.47405 * 171.92765 * 1 2 3 28 28 H 1.09002 * 109.47141 * 240.00053 * 2 1 3 29 29 H 1.09004 * 109.46892 * 120.00079 * 2 1 3 30 30 H 1.08997 * 110.59632 * 28.75389 * 7 5 3 31 31 H 1.09007 * 110.72655 * 265.88359 * 7 5 3 32 32 H 1.00908 * 110.99775 * 200.31202 * 8 7 5 33 33 H 1.08995 * 109.90008 * 267.06002 * 9 8 7 34 34 H 1.09005 * 110.03684 * 145.91785 * 9 8 7 35 35 H 1.08999 * 110.59766 * 265.81313 * 12 10 9 36 36 H 1.08995 * 110.60166 * 28.75515 * 12 10 9 37 37 H 1.08995 * 109.47487 * 304.04811 * 14 13 3 38 38 H 1.09006 * 109.47027 * 64.05411 * 14 13 3 39 39 H 1.09008 * 109.47002 * 299.99812 * 15 14 13 40 40 H 1.08997 * 109.47427 * 60.00016 * 15 14 13 41 41 H 1.08995 * 109.47264 * 299.99777 * 16 15 14 42 42 H 1.09006 * 109.47093 * 60.00281 * 16 15 14 43 43 H 0.97007 * 120.00274 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5957 1.9955 -0.8275 5 6 3.5729 1.4556 -0.1248 6 1 4.0074 0.4598 -0.2117 7 6 3.9710 2.3885 -1.2932 8 7 5.2675 2.9633 -0.8553 9 6 5.1251 3.2190 0.5938 10 6 4.0747 2.2307 1.1284 11 1 4.4689 1.5751 1.9048 12 6 2.8223 3.0239 1.5714 13 7 1.7006 2.0961 1.2819 14 6 0.4283 2.8235 1.1812 15 6 0.1613 3.5677 2.4911 16 6 -1.1641 4.3249 2.3865 17 6 -1.4274 5.0574 3.6769 18 1 -0.7199 4.9900 4.4901 19 6 -2.5709 5.8144 3.8189 20 7 -3.4321 5.8969 2.8285 21 14 -2.8969 6.7230 5.4182 22 1 -1.7954 7.6856 5.6741 23 1 -4.1828 7.4588 5.3163 24 1 -2.9714 5.7475 6.5354 25 1 -0.3634 0.3837 0.9533 26 1 -0.3633 0.6337 -0.8090 27 1 -0.3634 -1.0175 -0.1443 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2282 3.1751 -1.4261 31 1 4.0953 1.8205 -2.2153 32 1 5.4720 3.8160 -1.3546 33 1 4.7890 4.2427 0.7586 34 1 6.0780 3.0559 1.0972 35 1 2.8682 3.2492 2.6369 36 1 2.7225 3.9397 0.9888 37 1 0.4831 3.5396 0.3612 38 1 -0.3803 2.1171 0.9934 39 1 0.1065 2.8517 3.3112 40 1 0.9699 4.2742 2.6790 41 1 -1.1098 5.0409 1.5664 42 1 -1.9724 3.6181 2.1989 43 1 -4.2365 6.4298 2.9282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251608684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:29 Heat of formation + Delta-G solvation = -10.651494 kcal Electronic energy + Delta-G solvation = -19371.923621 eV Core-core repulsion = 16643.847433 eV Total energy + Delta-G solvation = -2728.076188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42421 -36.62681 -34.19210 -32.99833 -31.81813 -29.80041 -29.65959 -26.25760 -25.80215 -23.89067 -22.04376 -21.51157 -20.38943 -20.03947 -19.22293 -16.59141 -16.34450 -15.86300 -15.41032 -14.68990 -14.45680 -14.37127 -13.75530 -13.49315 -13.11980 -12.71495 -12.60159 -12.34808 -12.29742 -12.11210 -11.84816 -11.42107 -11.24740 -11.15214 -10.90114 -10.82407 -10.69448 -10.56824 -10.53116 -10.47927 -10.16422 -9.60530 -9.31788 -9.04733 -8.76481 -8.33525 -8.10939 -5.98840 -4.01031 3.33893 3.38027 3.40754 4.04320 4.10091 4.37695 4.47194 4.59942 4.78749 4.95861 5.10704 5.21631 5.28984 5.32707 5.36864 5.42075 5.50119 5.58609 5.62914 5.69474 5.78057 5.81558 5.85532 5.89791 6.05457 6.08473 6.15152 6.21242 6.29455 6.35599 6.50136 6.54815 6.69316 6.83132 7.06231 7.08819 7.25198 7.41393 7.68590 7.83709 8.01265 8.44716 9.05816 9.62900 11.12559 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.004665 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.700139 B = 6000.065309 C = 6654.900179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C 0.069 3.931 4 H 0.051 0.949 5 C -0.091 4.091 6 H 0.095 0.905 7 C 0.041 3.959 8 N -0.673 5.673 9 C 0.043 3.957 10 C -0.098 4.098 11 H 0.096 0.904 12 C 0.043 3.957 13 N -0.508 5.508 14 C 0.042 3.958 15 C -0.106 4.106 16 C 0.023 3.977 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.336 0.664 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.025 0.975 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.632 -9.020 -7.904 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.040 4.040 4 H 0.069 0.931 5 C -0.111 4.111 6 H 0.114 0.886 7 C -0.088 4.088 8 N -0.302 5.302 9 C -0.087 4.087 10 C -0.118 4.118 11 H 0.114 0.886 12 C -0.085 4.085 13 N -0.232 5.232 14 C -0.085 4.085 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.072 0.928 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.754 -9.934 -7.498 19.302 hybrid contribution -0.887 2.107 0.181 2.294 sum 13.867 -7.826 -7.317 17.524 Atomic orbital electron populations 1.21903 0.95810 1.00970 1.02630 1.21475 0.96158 0.95111 1.01465 1.22481 0.93408 0.96215 0.91918 0.93084 1.22882 0.94723 0.99371 0.94098 0.88639 1.23154 0.90177 0.97121 0.98371 1.63049 1.31387 1.31844 1.03888 1.22695 0.99210 0.97662 0.89125 1.22874 0.94748 0.96517 0.97629 0.88575 1.23292 0.89523 0.93881 1.01799 1.64746 1.02371 1.27488 1.28623 1.22643 0.90808 0.96166 0.98919 1.21661 1.00162 0.97944 0.94621 1.19059 0.90802 0.94667 0.96948 1.21208 1.05603 1.28980 0.99923 0.92781 1.25019 0.96197 0.96726 0.96493 1.69956 1.11301 1.40867 1.31491 0.86667 0.77407 0.79928 0.84048 1.20301 1.21294 1.20195 0.91260 0.93238 0.93265 0.92365 0.91270 0.94081 0.90140 0.84872 0.93730 0.90478 0.89704 0.94034 0.95661 0.90195 0.92594 0.93662 0.96980 0.96606 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.69 37.16 0.32 -1.60 16 2 C -0.10 -1.20 5.47 -26.74 -0.15 -1.35 16 3 C 0.07 0.87 2.15 -66.78 -0.14 0.72 16 4 H 0.05 0.68 6.85 -51.93 -0.36 0.33 16 5 C -0.09 -1.02 3.65 -87.87 -0.32 -1.34 16 6 H 0.10 1.01 7.85 -51.93 -0.41 0.61 16 7 C 0.04 0.43 6.78 -2.07 -0.01 0.42 16 8 N -0.67 -6.92 7.51 -110.45 -0.83 -7.75 16 9 C 0.04 0.45 7.06 -2.89 -0.02 0.42 16 10 C -0.10 -1.13 4.12 -87.87 -0.36 -1.49 16 11 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 12 C 0.04 0.60 4.59 -2.07 -0.01 0.59 16 13 N -0.51 -7.62 4.89 -222.98 -1.09 -8.71 16 14 C 0.04 0.74 4.49 -3.82 -0.02 0.72 16 15 C -0.11 -2.23 4.97 -26.73 -0.13 -2.37 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 18 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 0.99 6.23 -51.93 -0.32 0.66 16 26 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.47 7.54 -51.93 -0.39 0.07 16 31 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.34 2.97 8.92 -39.29 -0.35 2.62 16 33 H 0.04 0.47 7.32 -51.93 -0.38 0.09 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.23 7.65 -51.93 -0.40 0.83 16 36 H 0.04 0.61 7.40 -51.93 -0.38 0.23 16 37 H 0.03 0.46 7.97 -51.93 -0.41 0.04 16 38 H 0.08 1.42 5.25 -51.93 -0.27 1.14 16 39 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 40 H 0.04 0.94 6.90 -51.93 -0.36 0.58 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -29.94 325.40 -10.50 -40.44 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.80 Total: -0.77 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.39 Total: -18.48 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -1.18 Total: -42.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.94 -10.50 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251608684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.787 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds