Wall clock time and date at job start Mon Mar 30 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46900 * 2 1 4 4 H 1.09003 * 110.37098 * 307.36991 * 3 2 1 5 5 C 1.49476 * 110.41688 * 185.00348 * 3 2 1 6 6 H 1.08995 * 108.57288 * 163.44107 * 5 3 2 7 7 C 1.49471 * 128.43388 * 29.36217 * 5 3 2 8 8 N 1.49775 * 104.56654 * 211.86494 * 7 5 3 9 9 C 1.50963 * 107.93727 * 7.29814 * 8 7 5 10 10 C 1.51372 * 101.96945 * 24.90860 * 9 8 7 11 11 H 1.08999 * 111.21242 * 72.58565 * 10 9 8 12 12 C 1.51376 * 124.04867 * 209.52301 * 10 9 8 13 13 N 1.50111 * 102.36732 * 151.56253 * 12 10 9 14 14 C 1.46906 * 111.00213 * 212.55298 * 13 12 10 15 15 C 1.53001 * 109.46748 * 69.87550 * 14 13 12 16 16 C 1.53004 * 109.47150 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47209 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00074 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00082 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99864 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00230 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47113 * 89.99761 * 21 19 17 23 23 H 1.48496 * 109.47445 * 209.99816 * 21 19 17 24 24 H 1.48504 * 109.47417 * 330.00050 * 21 19 17 25 25 H 1.09002 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47323 * 299.99481 * 1 2 3 27 27 H 1.08997 * 109.47451 * 59.99974 * 1 2 3 28 28 H 1.09003 * 109.47323 * 240.00519 * 2 1 3 29 29 H 1.08997 * 109.47451 * 120.00026 * 2 1 3 30 30 H 1.09003 * 110.41887 * 330.63734 * 7 5 3 31 31 H 1.08998 * 110.41852 * 93.09278 * 7 5 3 32 32 H 1.00897 * 110.99833 * 245.11757 * 8 7 5 33 33 H 1.09004 * 110.77474 * 266.92695 * 9 8 7 34 34 H 1.08998 * 111.25575 * 143.10123 * 9 8 7 35 35 H 1.08998 * 110.83126 * 269.78393 * 12 10 9 36 36 H 1.09003 * 110.82534 * 33.34943 * 12 10 9 37 37 H 1.08992 * 109.47751 * 189.87431 * 14 13 12 38 38 H 1.08999 * 109.46987 * 309.88052 * 14 13 12 39 39 H 1.09003 * 109.47317 * 300.00185 * 15 14 13 40 40 H 1.08996 * 109.47649 * 60.00227 * 15 14 13 41 41 H 1.09003 * 109.47033 * 300.00202 * 16 15 14 42 42 H 1.08999 * 109.46915 * 60.00300 * 16 15 14 43 43 H 0.97000 * 120.00112 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5817 2.0070 -0.8121 5 6 3.5295 1.4691 -0.1222 6 1 3.8361 2.4736 -0.4138 7 6 4.4237 0.4824 -0.8011 8 7 5.6914 0.5121 -0.0039 9 6 5.4530 1.3678 1.2167 10 6 3.9527 1.2605 1.3873 11 1 3.6672 0.2752 1.7555 12 6 3.0893 2.3443 1.9967 13 7 1.7686 2.1225 1.3186 14 6 1.0527 3.3917 1.1322 15 6 1.7726 4.2328 0.0761 16 6 1.0275 5.5550 -0.1176 17 6 1.7361 6.3832 -1.1583 18 1 2.6290 6.0046 -1.6336 19 6 1.2453 7.6247 -1.5028 20 7 0.1584 8.0859 -0.9236 21 14 2.1241 8.6516 -2.7922 22 1 1.5743 8.3364 -4.1352 23 1 1.9206 10.0932 -2.4999 24 1 3.5762 8.3416 -2.7666 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.9810 -0.5133 -0.7744 31 1 4.6145 0.7872 -1.8301 32 1 6.4575 0.8675 -0.5560 33 1 5.7489 2.4000 1.0291 34 1 5.9717 0.9671 2.0876 35 1 2.9994 2.2080 3.0744 36 1 3.4845 3.3326 1.7616 37 1 0.0338 3.1892 0.8026 38 1 1.0279 3.9368 2.0758 39 1 2.7917 4.4354 0.4057 40 1 1.7975 3.6878 -0.8675 41 1 0.0083 5.3528 -0.4470 42 1 1.0030 6.1000 0.8260 43 1 -0.1871 8.9592 -1.1663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251608690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:31 Heat of formation + Delta-G solvation = 12.157560 kcal Electronic energy + Delta-G solvation = -19695.905867 eV Core-core repulsion = 16968.818754 eV Total energy + Delta-G solvation = -2727.087113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79679 -36.58513 -34.03726 -33.05040 -31.70619 -29.61601 -29.40978 -26.25382 -25.97389 -23.87291 -22.52127 -21.54043 -20.51245 -19.84962 -18.87199 -16.43433 -16.31649 -15.94960 -15.03387 -14.79119 -14.45770 -14.27613 -13.89538 -13.48779 -13.03987 -12.74587 -12.58602 -12.38811 -12.13187 -12.07579 -11.72585 -11.44388 -11.28380 -11.09767 -10.92400 -10.87818 -10.77181 -10.58182 -10.46702 -10.28146 -10.05832 -9.57371 -9.50586 -9.19795 -8.63815 -8.38211 -7.91154 -6.03184 -4.06085 3.27961 3.34419 3.37183 3.94656 3.99206 4.09058 4.42243 4.73443 4.98236 5.06309 5.24546 5.31886 5.33692 5.40629 5.50358 5.56320 5.59489 5.62209 5.67191 5.77110 5.86202 5.88949 5.92904 6.01172 6.08892 6.12466 6.21195 6.26244 6.31835 6.39508 6.46551 6.51736 6.57441 6.76661 7.03522 7.13062 7.17529 7.39939 7.62872 7.77547 7.96032 8.39030 9.00644 9.58111 11.07820 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.005521 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.575203 B = 5070.464292 C = 5624.168613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C 0.089 3.911 4 H 0.080 0.920 5 C -0.152 4.152 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.684 5.684 9 C 0.059 3.941 10 C -0.120 4.120 11 H 0.092 0.908 12 C 0.052 3.948 13 N -0.520 5.520 14 C 0.046 3.954 15 C -0.142 4.142 16 C 0.025 3.975 17 C -0.521 4.521 18 H 0.051 0.949 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.336 0.664 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -15.660 3.385 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.020 4.020 4 H 0.098 0.902 5 C -0.172 4.172 6 H 0.088 0.912 7 C -0.062 4.062 8 N -0.313 5.313 9 C -0.070 4.070 10 C -0.139 4.139 11 H 0.110 0.890 12 C -0.076 4.076 13 N -0.243 5.243 14 C -0.082 4.082 15 C -0.181 4.181 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.069 0.931 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.002 -16.450 4.044 17.971 hybrid contribution 0.933 2.322 -1.683 3.015 sum 6.936 -14.128 2.361 15.915 Atomic orbital electron populations 1.21694 0.95766 1.00657 1.02294 1.21417 0.96162 0.95222 1.01200 1.21621 0.92204 0.95843 0.92287 0.90204 1.22488 0.96973 1.00721 0.97028 0.91203 1.21676 0.89720 0.99362 0.95458 1.63539 1.06060 1.53439 1.08254 1.22367 0.95138 0.95727 0.93760 1.22646 0.94310 1.00801 0.96156 0.88956 1.22444 0.89163 0.97085 0.98871 1.65421 1.17797 1.22748 1.18328 1.22426 0.97857 0.88354 0.99546 1.22274 0.99388 0.99017 0.97399 1.19025 0.95389 0.90119 0.96783 1.21230 1.10947 1.01659 1.22087 0.93055 1.25017 0.95061 0.97808 0.96493 1.69959 1.21881 1.18933 1.42575 0.86628 0.80002 0.79595 0.81981 1.20627 1.21128 1.20005 0.93615 0.91835 0.93217 0.92215 0.91890 0.90236 0.92373 0.84946 0.93292 0.89975 0.90334 0.92477 0.90919 0.91148 0.93712 0.93153 0.96571 0.96664 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.86 37.16 0.37 -1.38 16 2 C -0.10 -1.22 5.07 -26.73 -0.14 -1.35 16 3 C 0.09 1.22 1.90 -67.24 -0.13 1.09 16 4 H 0.08 1.26 5.81 -51.93 -0.30 0.96 16 5 C -0.15 -1.96 2.28 -91.27 -0.21 -2.17 16 6 H 0.07 1.06 7.36 -51.93 -0.38 0.68 16 7 C 0.07 0.76 7.14 -3.96 -0.03 0.73 16 8 N -0.68 -7.52 7.57 -111.11 -0.84 -8.36 16 9 C 0.06 0.65 7.45 -2.35 -0.02 0.63 16 10 C -0.12 -1.45 3.10 -89.43 -0.28 -1.73 16 11 H 0.09 1.16 7.22 -51.93 -0.37 0.79 16 12 C 0.05 0.71 6.21 -2.84 -0.02 0.69 16 13 N -0.52 -7.68 5.07 -223.60 -1.13 -8.81 16 14 C 0.05 0.79 5.39 -3.82 -0.02 0.77 16 15 C -0.14 -2.89 3.98 -26.73 -0.11 -3.00 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 18 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.65 7.20 -51.93 -0.37 0.27 16 29 H 0.06 0.76 7.19 -51.93 -0.37 0.39 16 30 H 0.08 0.88 6.88 -51.93 -0.36 0.52 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.34 3.24 8.96 -39.29 -0.35 2.89 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.86 6.27 -51.93 -0.33 0.53 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 39 H 0.04 0.92 6.45 -51.93 -0.33 0.58 16 40 H 0.05 1.03 6.00 -51.93 -0.31 0.72 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -29.43 323.47 -10.18 -39.61 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.67 Total: 1.00 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.12 Total: -18.80 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.24 Total: -43.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.43 -10.18 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251608690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.766 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds