Wall clock time and date at job start Mon Mar 30 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46900 * 2 1 4 4 H 1.09003 * 110.37098 * 307.36991 * 3 2 1 5 5 C 1.49476 * 110.41688 * 185.00348 * 3 2 1 6 6 H 1.08995 * 108.57288 * 163.44107 * 5 3 2 7 7 C 1.49471 * 128.43388 * 29.36217 * 5 3 2 8 8 N 1.49775 * 104.56654 * 211.86494 * 7 5 3 9 9 C 1.50963 * 107.93727 * 7.29814 * 8 7 5 10 10 C 1.51372 * 101.96945 * 24.90860 * 9 8 7 11 11 H 1.08999 * 111.21242 * 72.58565 * 10 9 8 12 12 C 1.51376 * 124.04867 * 209.52301 * 10 9 8 13 13 N 1.50111 * 102.36732 * 151.56253 * 12 10 9 14 14 C 1.46906 * 111.00213 * 212.55298 * 13 12 10 15 15 C 1.53001 * 109.46748 * 69.87550 * 14 13 12 16 16 C 1.53004 * 109.47150 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47209 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00074 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00082 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99864 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00230 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47113 * 89.99761 * 21 19 17 23 23 H 1.48496 * 109.47445 * 209.99816 * 21 19 17 24 24 H 1.48504 * 109.47417 * 330.00050 * 21 19 17 25 25 H 1.09002 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47323 * 299.99481 * 1 2 3 27 27 H 1.08997 * 109.47451 * 59.99974 * 1 2 3 28 28 H 1.09003 * 109.47323 * 240.00519 * 2 1 3 29 29 H 1.08997 * 109.47451 * 120.00026 * 2 1 3 30 30 H 1.09003 * 110.41887 * 330.63734 * 7 5 3 31 31 H 1.08998 * 110.41852 * 93.09278 * 7 5 3 32 32 H 1.00897 * 110.99833 * 245.11757 * 8 7 5 33 33 H 1.09004 * 110.77474 * 266.92695 * 9 8 7 34 34 H 1.08998 * 111.25575 * 143.10123 * 9 8 7 35 35 H 1.08998 * 110.83126 * 269.78393 * 12 10 9 36 36 H 1.09003 * 110.82534 * 33.34943 * 12 10 9 37 37 H 1.08992 * 109.47751 * 189.87431 * 14 13 12 38 38 H 1.08999 * 109.46987 * 309.88052 * 14 13 12 39 39 H 1.09003 * 109.47317 * 300.00185 * 15 14 13 40 40 H 1.08996 * 109.47649 * 60.00227 * 15 14 13 41 41 H 1.09003 * 109.47033 * 300.00202 * 16 15 14 42 42 H 1.08999 * 109.46915 * 60.00300 * 16 15 14 43 43 H 0.97000 * 120.00112 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5817 2.0070 -0.8121 5 6 3.5295 1.4691 -0.1222 6 1 3.8361 2.4736 -0.4138 7 6 4.4237 0.4824 -0.8011 8 7 5.6914 0.5121 -0.0039 9 6 5.4530 1.3678 1.2167 10 6 3.9527 1.2605 1.3873 11 1 3.6672 0.2752 1.7555 12 6 3.0893 2.3443 1.9967 13 7 1.7686 2.1225 1.3186 14 6 1.0527 3.3917 1.1322 15 6 1.7726 4.2328 0.0761 16 6 1.0275 5.5550 -0.1176 17 6 1.7361 6.3832 -1.1583 18 1 2.6290 6.0046 -1.6336 19 6 1.2453 7.6247 -1.5028 20 7 0.1584 8.0859 -0.9236 21 14 2.1241 8.6516 -2.7922 22 1 1.5743 8.3364 -4.1352 23 1 1.9206 10.0932 -2.4999 24 1 3.5762 8.3416 -2.7666 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.9810 -0.5133 -0.7744 31 1 4.6145 0.7872 -1.8301 32 1 6.4575 0.8675 -0.5560 33 1 5.7489 2.4000 1.0291 34 1 5.9717 0.9671 2.0876 35 1 2.9994 2.2080 3.0744 36 1 3.4845 3.3326 1.7616 37 1 0.0338 3.1892 0.8026 38 1 1.0279 3.9368 2.0758 39 1 2.7917 4.4354 0.4057 40 1 1.7975 3.6878 -0.8675 41 1 0.0083 5.3528 -0.4470 42 1 1.0030 6.1000 0.8260 43 1 -0.1871 8.9592 -1.1663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251608690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:31 Heat of formation + Delta-G solvation = -7.752783 kcal Electronic energy + Delta-G solvation = -19696.769244 eV Core-core repulsion = 16968.818754 eV Total energy + Delta-G solvation = -2727.950490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88407 -37.78737 -35.76134 -34.44464 -33.30128 -30.89610 -30.58754 -27.84675 -27.12456 -25.37396 -23.59625 -23.20616 -21.61960 -21.19354 -20.02262 -18.54034 -17.37115 -17.04201 -16.58562 -16.19386 -15.95504 -15.57445 -15.03194 -14.67604 -14.35203 -14.09854 -14.05609 -13.77511 -13.46869 -13.23717 -12.95945 -12.85989 -12.69775 -12.57526 -12.46030 -12.35584 -12.17670 -11.97884 -11.72134 -11.47614 -11.44799 -11.29344 -11.20584 -10.99066 -10.59819 -9.54815 -9.21127 -8.24733 -6.37214 1.34523 1.35782 1.46647 2.35372 2.84522 2.95974 3.07276 3.12506 3.67985 3.98269 4.00237 4.10564 4.26817 4.29745 4.35488 4.45314 4.48683 4.53419 4.57796 4.63014 4.70461 4.75831 4.81325 4.85413 4.93765 4.99496 5.08805 5.12059 5.13555 5.18202 5.25440 5.34614 5.40812 5.43191 5.54073 5.59293 5.64087 5.78455 5.91877 6.06499 6.19588 6.36301 6.78827 7.32187 8.86265 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.005521 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.575203 B = 5070.464292 C = 5624.168613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C 0.087 3.913 4 H 0.056 0.944 5 C -0.148 4.148 6 H 0.042 0.958 7 C 0.070 3.930 8 N -0.684 5.684 9 C 0.061 3.939 10 C -0.108 4.108 11 H 0.097 0.903 12 C 0.050 3.950 13 N -0.516 5.516 14 C 0.058 3.942 15 C -0.121 4.121 16 C 0.029 3.971 17 C -0.545 4.545 18 H 0.053 0.947 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.345 0.655 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.048 0.952 41 H -0.008 1.008 42 H -0.009 1.009 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 -17.000 2.956 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.021 4.021 4 H 0.075 0.925 5 C -0.168 4.168 6 H 0.061 0.939 7 C -0.059 4.059 8 N -0.313 5.313 9 C -0.068 4.068 10 C -0.128 4.128 11 H 0.115 0.885 12 C -0.077 4.077 13 N -0.239 5.239 14 C -0.070 4.070 15 C -0.159 4.159 16 C -0.009 4.009 17 C -0.583 4.583 18 H 0.071 0.929 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.190 1.190 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.427 -17.809 3.616 19.631 hybrid contribution 0.472 2.736 -1.527 3.169 sum 7.899 -15.073 2.089 17.145 Atomic orbital electron populations 1.21672 0.95800 1.01544 1.01209 1.21378 0.96059 0.93627 1.02162 1.21650 0.92876 0.96691 0.90873 0.92542 1.22416 0.96439 0.99847 0.98133 0.93912 1.21689 0.89436 0.99148 0.95622 1.63567 1.06111 1.53348 1.08287 1.22388 0.94271 0.95663 0.94433 1.22579 0.94967 1.00203 0.95015 0.88456 1.22493 0.88762 0.96830 0.99662 1.65493 1.18584 1.20758 1.19032 1.22199 0.97584 0.89070 0.98175 1.22020 0.98719 0.96677 0.98520 1.18922 0.94647 0.92389 0.94956 1.21634 1.11292 1.02526 1.22832 0.92890 1.25961 0.95781 0.99146 0.98746 1.70087 1.23353 1.19539 1.44078 0.85486 0.79041 0.77724 0.79051 1.19627 1.20413 1.19004 0.91733 0.93222 0.94011 0.90626 0.91381 0.89311 0.91858 0.84005 0.93883 0.88431 0.88951 0.94177 0.91392 0.91333 0.93996 0.93298 0.98977 0.99053 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.86 71.98 0.71 -2.55 16 2 C -0.09 -2.08 5.07 30.60 0.16 -1.92 16 3 C 0.09 2.35 1.90 43.02 0.08 2.43 16 4 H 0.06 1.80 5.81 -2.39 -0.01 1.79 16 5 C -0.15 -3.67 2.28 -11.22 -0.03 -3.70 16 6 H 0.04 1.30 7.36 -2.39 -0.02 1.28 16 7 C 0.07 1.44 7.14 84.61 0.60 2.05 16 8 N -0.68 -13.42 7.57 -505.43 -3.83 -17.25 16 9 C 0.06 1.23 7.45 84.97 0.63 1.86 16 10 C -0.11 -2.44 3.10 -10.02 -0.03 -2.47 16 11 H 0.10 2.18 7.22 -2.39 -0.02 2.16 16 12 C 0.05 1.32 6.21 85.14 0.53 1.85 16 13 N -0.52 -15.04 5.07 -861.35 -4.36 -19.40 16 14 C 0.06 2.06 5.39 86.30 0.46 2.52 16 15 C -0.12 -5.06 3.98 30.60 0.12 -4.94 16 16 C 0.03 1.54 4.97 29.85 0.15 1.69 16 17 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 18 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 21 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.25 8.02 -2.39 -0.02 1.23 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.45 7.20 -2.39 -0.02 1.43 16 29 H 0.07 1.46 7.19 -2.39 -0.02 1.44 16 30 H 0.09 1.70 6.88 -2.39 -0.02 1.68 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.34 5.88 8.96 -89.70 -0.80 5.07 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.20 6.27 -2.39 -0.01 1.19 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 39 H 0.04 1.77 6.45 -2.39 -0.02 1.75 16 40 H 0.05 2.06 6.00 -2.39 -0.01 2.04 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -63.27 323.47 -1.63 -64.89 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.17 Total: 16.00 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.09 Total: -34.06 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -7.91 Total: -93.56 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.27 -1.63 -64.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251608690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.140 kcal (2) G-P(sol) polarization free energy of solvation -63.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds