Wall clock time and date at job start Mon Mar 30 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47157 * 2 1 4 4 H 1.09002 * 109.50103 * 305.07596 * 3 2 1 5 5 C 1.53042 * 109.53816 * 65.17278 * 3 2 1 6 6 N 1.46844 * 109.52399 * 179.14085 * 5 3 2 7 7 C 1.46903 * 110.99919 * 174.15946 * 6 5 3 8 8 C 1.52997 * 109.46942 * 164.11180 * 7 6 5 9 9 C 1.50697 * 115.55000 * 291.70519 * 8 7 6 10 10 H 1.08001 * 120.00355 * 143.83408 * 9 8 7 11 11 C 1.37878 * 119.99845 * 323.82468 * 9 8 7 12 12 N 1.31514 * 120.00278 * 353.57736 * 11 9 8 13 13 Si 1.86809 * 119.99676 * 173.57100 * 11 9 8 14 14 H 1.48493 * 109.47199 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46519 * 120.00602 * 13 11 9 16 16 H 1.48502 * 109.47153 * 240.00122 * 13 11 9 17 17 C 1.53002 * 117.49554 * 146.03693 * 8 7 6 18 18 C 1.53005 * 117.49982 * 77.37808 * 8 7 6 19 19 C 1.46839 * 111.20020 * 298.25755 * 6 5 3 20 20 C 1.53170 * 109.55655 * 61.74396 * 19 6 5 21 21 C 1.53121 * 109.20751 * 300.85733 * 20 19 6 22 22 H 1.08999 * 109.52060 * 177.55557 * 21 20 19 23 23 N 1.46897 * 109.52430 * 297.68934 * 21 20 19 24 24 H 1.09008 * 109.47092 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47735 * 300.00563 * 1 2 3 26 26 H 1.09001 * 109.46837 * 60.00386 * 1 2 3 27 27 H 1.08996 * 109.47735 * 239.99437 * 2 1 3 28 28 H 1.09001 * 109.46837 * 119.99614 * 2 1 3 29 29 H 1.09002 * 109.45905 * 299.15627 * 5 3 2 30 30 H 1.08997 * 109.46294 * 59.13740 * 5 3 2 31 31 H 1.09002 * 109.46925 * 284.11349 * 7 6 5 32 32 H 1.08995 * 109.46978 * 44.11007 * 7 6 5 33 33 H 0.96996 * 119.99830 * 184.99234 * 12 11 9 34 34 H 1.08993 * 117.50219 * 359.97438 * 17 8 7 35 35 H 1.09003 * 117.49617 * 145.02452 * 17 8 7 36 36 H 1.09001 * 117.49438 * 214.97559 * 18 8 7 37 37 H 1.08998 * 117.49718 * 359.97256 * 18 8 7 38 38 H 1.09004 * 109.46335 * 181.75508 * 19 6 5 39 39 H 1.08998 * 109.46775 * 301.73700 * 19 6 5 40 40 H 1.09001 * 109.59169 * 180.90783 * 20 19 6 41 41 H 1.09000 * 109.49416 * 60.75031 * 20 19 6 42 42 H 1.00896 * 111.00194 * 299.87267 * 23 21 20 43 43 H 1.00903 * 110.99901 * 63.82817 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 -0.8409 5 6 1.6396 2.1269 1.3090 6 7 2.1469 3.5049 1.3174 7 6 1.6645 4.2363 2.4966 8 6 2.5028 5.5015 2.6901 9 6 3.9363 5.2756 3.0960 10 1 4.7131 5.9241 2.7186 11 6 4.2563 4.2410 3.9494 12 7 3.3013 3.5306 4.5087 13 14 6.0465 3.8482 4.3109 14 1 6.9202 4.7876 3.5631 15 1 6.2999 3.9900 5.7673 16 1 6.3424 2.4551 3.8904 17 6 1.7965 6.7380 3.2497 18 6 2.2066 6.6919 1.7756 19 6 3.6133 3.5313 1.2454 20 6 4.0739 2.8885 -0.0664 21 6 3.5660 1.4452 -0.1257 22 1 3.8539 0.9965 -1.0764 23 7 4.1510 0.6732 0.9788 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.5530 2.1394 1.3947 30 1 2.0640 1.5787 2.1500 31 1 0.6198 4.5112 2.3513 32 1 1.7541 3.6026 3.3789 33 1 3.5230 2.8508 5.1641 34 1 0.7347 6.6503 3.4796 35 1 2.3690 7.3884 3.9111 36 1 3.0487 7.3118 1.4679 37 1 1.4149 6.5735 1.0358 38 1 3.9603 4.5639 1.2848 39 1 4.0284 2.9763 2.0866 40 1 5.1629 2.8933 -0.1132 41 1 3.6705 3.4511 -0.9084 42 1 5.1581 0.6622 0.9187 43 1 3.8459 1.0312 1.8715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251776525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:06 Heat of formation + Delta-G solvation = 26.991793 kcal Electronic energy + Delta-G solvation = -20717.820653 eV Core-core repulsion = 17991.376801 eV Total energy + Delta-G solvation = -2726.443852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.22068 -36.82813 -33.67453 -33.16392 -32.27463 -29.23094 -28.20391 -25.89221 -25.38095 -23.34377 -21.77628 -21.07134 -20.42018 -18.80447 -18.20251 -16.37181 -15.83921 -14.92433 -14.71273 -14.23575 -14.05460 -13.78257 -13.51427 -13.30342 -12.90332 -12.78495 -12.61476 -11.88362 -11.59841 -11.51567 -11.29681 -11.20502 -10.88406 -10.75245 -10.61040 -10.37904 -10.31419 -10.17933 -10.09396 -9.72545 -9.46389 -9.24824 -8.91864 -8.67741 -8.28210 -8.15410 -7.00607 -5.98048 -4.11596 3.13615 3.25124 3.28313 4.24157 4.83919 4.96172 5.11654 5.15324 5.39305 5.43546 5.59416 5.67982 5.79514 5.91998 5.93754 6.02869 6.16381 6.23862 6.29612 6.34314 6.41335 6.45060 6.46065 6.51568 6.55622 6.67830 6.76326 6.78163 6.87915 6.91028 7.00157 7.17996 7.23785 7.36560 7.51076 7.56654 7.62652 7.88140 8.03813 8.34195 8.37484 8.42073 8.77478 9.39297 10.84876 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.009511 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.161934 B = 2943.285007 C = 3629.039627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.074 4.074 4 H 0.071 0.929 5 C 0.062 3.938 6 N -0.529 5.529 7 C 0.074 3.926 8 C 0.051 3.949 9 C -0.477 4.477 10 H 0.061 0.939 11 C 0.070 3.930 12 N -0.877 5.877 13 Si 0.882 3.118 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.281 1.281 17 C -0.204 4.204 18 C -0.202 4.202 19 C 0.056 3.944 20 C -0.161 4.161 21 C 0.095 3.905 22 H 0.065 0.935 23 N -0.845 5.845 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.107 0.893 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.331 0.669 43 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -4.719 -6.579 8.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.093 4.093 4 H 0.089 0.911 5 C -0.067 4.067 6 N -0.253 5.253 7 C -0.052 4.052 8 C 0.051 3.949 9 C -0.515 4.515 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.516 5.516 13 Si 0.710 3.290 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.207 1.207 17 C -0.242 4.242 18 C -0.239 4.239 19 C -0.072 4.072 20 C -0.201 4.201 21 C -0.017 4.017 22 H 0.083 0.917 23 N -0.375 5.375 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.156 -5.314 -7.198 9.204 hybrid contribution 1.648 0.448 1.234 2.107 sum -0.509 -4.866 -5.964 7.714 Atomic orbital electron populations 1.21847 0.96818 1.00689 1.01720 1.21388 0.94480 0.96505 1.02092 1.21187 0.94105 0.95212 0.98799 0.91086 1.22044 0.99024 0.90224 0.95426 1.62017 1.10023 1.11615 1.41623 1.22044 0.93725 0.96050 0.93417 1.19045 0.94478 0.85674 0.95747 1.20516 0.90860 1.12528 1.27562 0.92089 1.24884 0.96936 0.95571 0.95742 1.69673 1.30815 1.23781 1.27280 0.86679 0.85483 0.78486 0.78373 1.19599 1.20899 1.20679 1.22933 0.98662 1.07197 0.95430 1.22805 1.01998 1.06756 0.92371 1.22800 0.87792 1.03687 0.92925 1.22616 0.99164 0.97186 1.01137 1.21446 0.94519 0.91653 0.94054 0.91670 1.59119 1.12898 1.58890 1.06637 0.93525 0.92548 0.93240 0.92836 0.91256 0.92259 0.95088 0.95663 0.87563 0.92830 0.91848 0.90693 0.91177 0.91157 0.86697 0.94056 0.93062 0.91962 0.85759 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.11 -1.51 5.14 -26.73 -0.14 -1.65 16 3 C -0.07 -1.18 2.17 -90.54 -0.20 -1.38 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.06 1.15 4.16 -3.83 -0.02 1.13 16 6 N -0.53 -11.01 4.84 -234.59 -1.14 -12.15 16 7 C 0.07 1.72 5.03 -3.82 -0.02 1.70 16 8 C 0.05 1.21 1.27 -155.66 -0.20 1.02 16 9 C -0.48 -12.01 5.75 -34.44 -0.20 -12.21 16 10 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 11 C 0.07 1.75 3.19 -17.82 -0.06 1.69 16 12 N -0.88 -22.46 10.35 55.43 0.57 -21.88 16 13 Si 0.88 19.77 29.29 -169.99 -4.98 14.79 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C -0.20 -4.59 9.91 -26.69 -0.26 -4.85 16 18 C -0.20 -4.40 9.94 -26.69 -0.27 -4.66 16 19 C 0.06 1.16 3.63 -3.77 -0.01 1.15 16 20 C -0.16 -2.84 5.78 -26.58 -0.15 -3.00 16 21 C 0.10 1.52 3.18 -67.59 -0.22 1.31 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 N -0.85 -13.77 8.41 -4.56 -0.04 -13.80 16 24 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.76 6.59 -51.93 -0.34 0.42 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 29 H 0.06 1.08 6.60 -51.93 -0.34 0.74 16 30 H 0.03 0.64 6.64 -51.93 -0.34 0.29 16 31 H 0.02 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.11 2.71 5.03 -51.93 -0.26 2.44 16 33 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.12 2.69 4.78 -51.93 -0.25 2.44 16 39 H 0.04 0.94 4.48 -51.93 -0.23 0.71 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.33 5.05 9.04 -39.29 -0.36 4.69 16 43 H 0.35 6.43 5.60 -39.29 -0.22 6.21 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -24.27 313.31 -9.60 -33.86 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -7.36 Total: 15.80 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -1.37 Total: -21.34 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.60 Total: -47.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.98 Total: 14.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -24.27 -9.60 -33.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251776525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -24.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds