Wall clock time and date at job start Mon Mar 30 2020 03:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47278 * 270.00624 * 3 2 1 5 5 H 1.48504 * 109.46897 * 30.00202 * 3 2 1 6 6 H 1.48499 * 109.47056 * 150.00084 * 3 2 1 7 7 C 1.37873 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99601 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00374 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.53114 * 109.52551 * 185.00285 * 10 9 7 12 12 C 1.53039 * 109.28285 * 182.37666 * 11 10 9 13 13 N 1.46844 * 109.52068 * 59.17744 * 12 11 10 14 14 C 1.46900 * 111.00209 * 174.16096 * 13 12 11 15 15 C 1.53002 * 109.47350 * 176.23110 * 14 13 12 16 16 H 1.08993 * 110.37140 * 303.70678 * 15 14 13 17 17 C 1.54261 * 110.32073 * 181.52164 * 15 14 13 18 18 C 1.54387 * 105.05939 * 241.10467 * 17 15 14 19 19 N 1.48556 * 104.59714 * 336.15249 * 18 17 15 20 20 C 1.48560 * 104.22285 * 39.47860 * 19 18 17 21 21 C 1.46850 * 111.20204 * 298.26116 * 13 12 11 22 22 C 1.53038 * 109.52392 * 61.74026 * 21 13 12 23 23 H 0.96994 * 119.99954 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47025 * 60.00085 * 9 7 2 25 25 H 1.08997 * 109.47521 * 300.00418 * 9 7 2 26 26 H 1.08997 * 109.52285 * 305.12755 * 10 9 7 27 27 H 1.08999 * 109.50475 * 62.43701 * 11 10 9 28 28 H 1.09004 * 109.53387 * 302.33795 * 11 10 9 29 29 H 1.09000 * 109.45939 * 299.16594 * 12 11 10 30 30 H 1.08998 * 109.45599 * 179.18532 * 12 11 10 31 31 H 1.09010 * 109.46816 * 56.23813 * 14 13 12 32 32 H 1.09001 * 109.47501 * 296.23622 * 14 13 12 33 33 H 1.09005 * 110.32035 * 122.21480 * 17 15 14 34 34 H 1.08990 * 110.32679 * 0.02562 * 17 15 14 35 35 H 1.09000 * 110.40910 * 94.93252 * 18 17 15 36 36 H 1.09003 * 110.41224 * 217.36896 * 18 17 15 37 37 H 1.00889 * 111.00141 * 159.03906 * 19 18 17 38 38 H 1.09001 * 110.41363 * 201.73915 * 20 19 18 39 39 H 1.09007 * 110.41178 * 79.29841 * 20 19 18 40 40 H 1.08998 * 109.46694 * 181.75756 * 21 13 12 41 41 H 1.09002 * 109.45605 * 301.72822 * 21 13 12 42 42 H 1.09001 * 109.50555 * 180.88662 * 22 21 13 43 43 H 1.08999 * 109.49855 * 60.76376 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5477 -2.6395 0.1243 12 6 6.0567 -4.0815 0.0642 13 7 5.6508 -4.6926 -1.2079 14 6 6.2388 -6.0300 -1.3609 15 6 5.7199 -6.6710 -2.6496 16 1 4.6305 -6.7022 -2.6459 17 6 6.2962 -8.0929 -2.8104 18 6 7.1057 -8.0514 -4.1244 19 7 6.5049 -6.9352 -4.8991 20 6 6.2298 -5.8900 -3.8799 21 6 4.1883 -4.7437 -1.3298 22 6 3.6235 -3.3214 -1.3113 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6803 0.8889 25 1 3.8746 -0.6798 -0.8910 26 1 3.5862 -3.1767 0.8395 27 1 5.8357 -2.1913 1.0752 28 1 5.9818 -2.0660 -0.6947 29 1 5.6336 -4.6508 0.8918 30 1 7.1441 -4.0861 0.1386 31 1 5.9590 -6.6496 -0.5087 32 1 7.3246 -5.9464 -1.4082 33 1 5.4894 -8.8220 -2.8857 34 1 6.9483 -8.3343 -1.9711 35 1 8.1563 -7.8482 -3.9173 36 1 6.9990 -8.9910 -4.6665 37 1 7.1457 -6.5962 -5.6008 38 1 5.4637 -5.2023 -4.2378 39 1 7.1434 -5.3484 -3.6345 40 1 3.9187 -5.2293 -2.2676 41 1 3.7740 -5.3098 -0.4955 42 1 2.5368 -3.3604 -1.3859 43 1 4.0268 -2.7588 -2.1532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:34 Heat of formation + Delta-G solvation = -12.368171 kcal Electronic energy + Delta-G solvation = -19225.583920 eV Core-core repulsion = 16497.433292 eV Total energy + Delta-G solvation = -2728.150628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50850 -37.96532 -34.66930 -32.43069 -30.99731 -30.34858 -29.20406 -28.01233 -24.97085 -22.99320 -22.69854 -21.67875 -20.52338 -19.61178 -18.93980 -16.71876 -16.47592 -16.33459 -15.15739 -14.66377 -14.43001 -14.22456 -13.75002 -13.56196 -13.10189 -12.97267 -12.72173 -12.45037 -12.14954 -11.97048 -11.87192 -11.80996 -11.41831 -11.09364 -10.94963 -10.78092 -10.69887 -10.66328 -10.45658 -10.05904 -9.73833 -9.52960 -9.19482 -8.96018 -8.75088 -8.48650 -8.09359 -5.99509 -3.96291 3.34160 3.41370 3.45512 3.99949 4.13716 4.49730 4.51537 4.72283 4.81818 5.00695 5.21601 5.30618 5.32984 5.35670 5.39573 5.48866 5.56533 5.57186 5.64978 5.71931 5.77720 5.81709 5.84218 5.95014 6.04361 6.10247 6.13715 6.25462 6.37502 6.51093 6.59112 6.60516 6.88635 6.98460 7.07698 7.12074 7.29982 7.32518 7.40709 7.53951 7.86076 8.59863 9.05779 9.63911 11.13969 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.004254 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.182823 B = 6580.860396 C = 6780.150446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.063 3.937 15 C -0.095 4.095 16 H 0.085 0.915 17 C -0.121 4.121 18 C 0.035 3.965 19 N -0.672 5.672 20 C 0.052 3.948 21 C 0.050 3.950 22 C -0.100 4.100 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.011 0.989 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.334 0.666 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.027 0.973 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.647 -14.150 -4.974 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.260 5.260 14 C -0.065 4.065 15 C -0.114 4.114 16 H 0.103 0.897 17 C -0.159 4.159 18 C -0.094 4.094 19 N -0.301 5.301 20 C -0.077 4.077 21 C -0.077 4.077 22 C -0.138 4.138 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.975 -14.003 -5.420 21.206 hybrid contribution 0.971 0.774 0.929 1.551 sum 15.946 -13.229 -4.491 21.200 Atomic orbital electron populations 1.69918 1.06278 1.26739 1.51612 1.25031 0.94689 0.99098 0.94761 0.86800 0.80353 0.83795 0.78459 1.20358 1.21561 1.19085 1.21162 0.89549 0.94279 1.50157 0.90981 1.19605 0.97052 0.91844 0.96082 1.21049 0.92422 0.98757 0.96926 1.21716 0.97606 0.94512 1.01336 1.22065 0.99190 0.96247 0.89274 1.61993 1.10193 1.19529 1.34283 1.22194 0.99119 0.89396 0.95781 1.22030 1.01343 0.93802 0.94259 0.89683 1.22347 0.99662 0.97078 0.96840 1.22892 0.96110 0.95944 0.94463 1.63730 1.45443 1.08207 1.12674 1.22855 1.00484 0.93588 0.90772 1.22307 0.86336 0.98895 1.00169 1.21551 1.01029 0.92956 0.98272 0.92870 0.96850 0.97021 0.92504 0.92223 0.91674 0.95354 0.91794 0.95148 0.91269 0.91060 0.91393 0.94443 0.90507 0.85076 0.89835 0.93644 0.90850 0.95490 0.90462 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.54 9.00 -34.44 -0.31 -14.85 16 8 H 0.07 2.18 7.32 -52.48 -0.38 1.80 16 9 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 10 C -0.07 -1.44 2.20 -90.50 -0.20 -1.64 16 11 C -0.11 -1.87 5.38 -26.65 -0.14 -2.01 16 12 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 13 N -0.54 -7.40 4.55 -234.66 -1.07 -8.47 16 14 C 0.06 0.72 4.22 -3.82 -0.02 0.70 16 15 C -0.10 -1.03 2.60 -89.23 -0.23 -1.26 16 16 H 0.08 1.01 6.03 -51.93 -0.31 0.70 16 17 C -0.12 -1.09 6.65 -25.34 -0.17 -1.26 16 18 C 0.04 0.31 7.47 -2.18 -0.02 0.29 16 19 N -0.67 -6.79 7.62 -109.65 -0.84 -7.63 16 20 C 0.05 0.57 6.81 -2.18 -0.01 0.56 16 21 C 0.05 0.76 5.06 -3.83 -0.02 0.75 16 22 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.03 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.33 2.85 8.92 -39.30 -0.35 2.50 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.51 7.81 -51.92 -0.41 0.10 16 40 H 0.07 1.04 5.77 -51.93 -0.30 0.74 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 1.59 7.05 -51.93 -0.37 1.23 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -30.09 322.77 -10.35 -40.44 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.94 Total: -0.81 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.47 Total: -18.40 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -1.13 Total: -43.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.09 -10.35 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.076 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds