Wall clock time and date at job start Mon Mar 30 2020 03:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47278 * 270.00624 * 3 2 1 5 5 H 1.48504 * 109.46897 * 30.00202 * 3 2 1 6 6 H 1.48499 * 109.47056 * 150.00084 * 3 2 1 7 7 C 1.37873 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99601 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00374 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.53114 * 109.52551 * 185.00285 * 10 9 7 12 12 C 1.53039 * 109.28285 * 182.37666 * 11 10 9 13 13 N 1.46844 * 109.52068 * 59.17744 * 12 11 10 14 14 C 1.46900 * 111.00209 * 174.16096 * 13 12 11 15 15 C 1.53002 * 109.47350 * 176.23110 * 14 13 12 16 16 H 1.08993 * 110.37140 * 303.70678 * 15 14 13 17 17 C 1.54261 * 110.32073 * 181.52164 * 15 14 13 18 18 C 1.54387 * 105.05939 * 241.10467 * 17 15 14 19 19 N 1.48556 * 104.59714 * 336.15249 * 18 17 15 20 20 C 1.48560 * 104.22285 * 39.47860 * 19 18 17 21 21 C 1.46850 * 111.20204 * 298.26116 * 13 12 11 22 22 C 1.53038 * 109.52392 * 61.74026 * 21 13 12 23 23 H 0.96994 * 119.99954 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47025 * 60.00085 * 9 7 2 25 25 H 1.08997 * 109.47521 * 300.00418 * 9 7 2 26 26 H 1.08997 * 109.52285 * 305.12755 * 10 9 7 27 27 H 1.08999 * 109.50475 * 62.43701 * 11 10 9 28 28 H 1.09004 * 109.53387 * 302.33795 * 11 10 9 29 29 H 1.09000 * 109.45939 * 299.16594 * 12 11 10 30 30 H 1.08998 * 109.45599 * 179.18532 * 12 11 10 31 31 H 1.09010 * 109.46816 * 56.23813 * 14 13 12 32 32 H 1.09001 * 109.47501 * 296.23622 * 14 13 12 33 33 H 1.09005 * 110.32035 * 122.21480 * 17 15 14 34 34 H 1.08990 * 110.32679 * 0.02562 * 17 15 14 35 35 H 1.09000 * 110.40910 * 94.93252 * 18 17 15 36 36 H 1.09003 * 110.41224 * 217.36896 * 18 17 15 37 37 H 1.00889 * 111.00141 * 159.03906 * 19 18 17 38 38 H 1.09001 * 110.41363 * 201.73915 * 20 19 18 39 39 H 1.09007 * 110.41178 * 79.29841 * 20 19 18 40 40 H 1.08998 * 109.46694 * 181.75756 * 21 13 12 41 41 H 1.09002 * 109.45605 * 301.72822 * 21 13 12 42 42 H 1.09001 * 109.50555 * 180.88662 * 22 21 13 43 43 H 1.08999 * 109.49855 * 60.76376 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5477 -2.6395 0.1243 12 6 6.0567 -4.0815 0.0642 13 7 5.6508 -4.6926 -1.2079 14 6 6.2388 -6.0300 -1.3609 15 6 5.7199 -6.6710 -2.6496 16 1 4.6305 -6.7022 -2.6459 17 6 6.2962 -8.0929 -2.8104 18 6 7.1057 -8.0514 -4.1244 19 7 6.5049 -6.9352 -4.8991 20 6 6.2298 -5.8900 -3.8799 21 6 4.1883 -4.7437 -1.3298 22 6 3.6235 -3.3214 -1.3113 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6803 0.8889 25 1 3.8746 -0.6798 -0.8910 26 1 3.5862 -3.1767 0.8395 27 1 5.8357 -2.1913 1.0752 28 1 5.9818 -2.0660 -0.6947 29 1 5.6336 -4.6508 0.8918 30 1 7.1441 -4.0861 0.1386 31 1 5.9590 -6.6496 -0.5087 32 1 7.3246 -5.9464 -1.4082 33 1 5.4894 -8.8220 -2.8857 34 1 6.9483 -8.3343 -1.9711 35 1 8.1563 -7.8482 -3.9173 36 1 6.9990 -8.9910 -4.6665 37 1 7.1457 -6.5962 -5.6008 38 1 5.4637 -5.2023 -4.2378 39 1 7.1434 -5.3484 -3.6345 40 1 3.9187 -5.2293 -2.2676 41 1 3.7740 -5.3098 -0.4955 42 1 2.5368 -3.3604 -1.3859 43 1 4.0268 -2.7588 -2.1532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:33 Heat of formation + Delta-G solvation = -33.190836 kcal Electronic energy + Delta-G solvation = -19226.486858 eV Core-core repulsion = 16497.433292 eV Total energy + Delta-G solvation = -2729.053567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56121 -39.01909 -36.15982 -34.37643 -32.22216 -31.59000 -30.28946 -29.37025 -26.34826 -24.45181 -23.97391 -22.54061 -21.97182 -20.63251 -20.32431 -18.85788 -17.37760 -17.24915 -16.35605 -16.23982 -15.73943 -15.36833 -15.09691 -14.81272 -14.74446 -14.33668 -14.05446 -13.65127 -13.40636 -13.24019 -13.08176 -12.87794 -12.61023 -12.49418 -12.33874 -12.06809 -11.97525 -11.89264 -11.75845 -11.65758 -11.41767 -11.24535 -10.80413 -10.77609 -10.69494 -9.49659 -9.19910 -8.26317 -6.28597 1.35993 1.37196 1.49376 2.37760 2.95069 3.09167 3.38278 3.72824 3.90222 3.94633 4.04169 4.07146 4.12686 4.30522 4.39071 4.47934 4.50955 4.56297 4.65748 4.74021 4.74935 4.81599 4.84733 4.89068 4.95457 4.99568 5.06131 5.09032 5.13816 5.23904 5.24978 5.32123 5.35659 5.41639 5.53385 5.71789 5.74922 5.83691 6.17798 6.24973 6.34353 6.44666 6.78639 7.35234 8.90498 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.004254 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.182823 B = 6580.860396 C = 6780.150446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.519 4.519 8 H 0.033 0.967 9 C -0.005 4.005 10 C -0.071 4.071 11 C -0.107 4.107 12 C 0.063 3.937 13 N -0.540 5.540 14 C 0.068 3.932 15 C -0.095 4.095 16 H 0.069 0.931 17 C -0.118 4.118 18 C 0.036 3.964 19 N -0.685 5.685 20 C 0.056 3.944 21 C 0.063 3.937 22 C -0.096 4.096 23 H 0.264 0.736 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.343 0.657 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.022 0.978 42 H 0.042 0.958 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.784 -14.552 -5.003 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.558 4.558 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.090 4.090 11 C -0.145 4.145 12 C -0.064 4.064 13 N -0.265 5.265 14 C -0.059 4.059 15 C -0.114 4.114 16 H 0.087 0.913 17 C -0.156 4.156 18 C -0.093 4.093 19 N -0.314 5.314 20 C -0.074 4.074 21 C -0.064 4.064 22 C -0.134 4.134 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.136 -14.428 -5.453 23.808 hybrid contribution -0.075 0.820 0.913 1.230 sum 18.061 -13.608 -4.540 23.065 Atomic orbital electron populations 1.70075 1.08256 1.27934 1.53286 1.26002 0.95567 1.03413 0.94474 0.85686 0.79521 0.78522 0.79082 1.19360 1.21128 1.17070 1.21477 0.92059 0.92868 1.49349 0.94913 1.19564 0.93902 0.94773 0.96018 1.20974 0.95247 0.95968 0.96809 1.21627 0.94291 0.96635 1.01920 1.22050 1.00709 0.94396 0.89258 1.61968 1.08753 1.21391 1.34342 1.22234 0.99758 0.87885 0.96073 1.21988 1.00440 0.95032 0.93969 0.91290 1.22347 0.99926 0.95659 0.97687 1.22945 0.96569 0.95691 0.94094 1.63700 1.46413 1.08365 1.12933 1.22740 0.99877 0.93619 0.91132 1.22079 0.87647 0.96191 1.00522 1.21419 0.99050 0.95322 0.97573 0.92693 0.96607 0.96723 0.94010 0.91197 0.91622 0.95360 0.88991 0.94632 0.89626 0.91135 0.89886 0.93220 0.89695 0.84155 0.91830 0.93504 0.89955 0.95985 0.93894 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.52 -30.41 9.00 25.60 0.23 -30.18 16 8 H 0.03 2.11 7.32 -2.91 -0.02 2.09 16 9 C -0.01 -0.25 3.52 29.85 0.11 -0.14 16 10 C -0.07 -2.82 2.20 -10.72 -0.02 -2.85 16 11 C -0.11 -3.29 5.38 30.65 0.16 -3.12 16 12 C 0.06 1.60 5.46 86.33 0.47 2.07 16 13 N -0.54 -13.80 4.55 -896.34 -4.07 -17.87 16 14 C 0.07 1.36 4.22 86.30 0.36 1.72 16 15 C -0.09 -1.87 2.60 -9.90 -0.03 -1.90 16 16 H 0.07 1.58 6.03 -2.39 -0.01 1.57 16 17 C -0.12 -1.82 6.65 31.49 0.21 -1.61 16 18 C 0.04 0.53 7.47 86.45 0.65 1.18 16 19 N -0.68 -12.64 7.62 -500.82 -3.82 -16.46 16 20 C 0.06 1.15 6.81 86.45 0.59 1.74 16 21 C 0.06 1.91 5.06 86.33 0.44 2.34 16 22 C -0.10 -3.64 5.15 30.65 0.16 -3.49 16 23 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 25 H 0.01 0.68 7.57 -2.39 -0.02 0.67 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 31 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.34 5.24 8.92 -89.70 -0.80 4.44 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 0.95 7.81 -2.38 -0.02 0.93 16 40 H 0.08 2.34 5.77 -2.39 -0.01 2.32 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.04 1.89 7.05 -2.39 -0.02 1.87 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -66.14 322.77 -1.82 -67.96 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.10 Total: 13.61 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.79 Total: -33.69 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -7.59 Total: -95.08 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -66.14 -1.82 -67.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.767 kcal (2) G-P(sol) polarization free energy of solvation -66.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds