Wall clock time and date at job start Mon Mar 30 2020 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.53572 * 2 1 4 4 C 1.53036 * 109.50290 * 120.10165 * 2 1 3 5 5 N 1.46853 * 109.51195 * 179.11539 * 4 2 1 6 6 C 1.46842 * 111.19688 * 298.25991 * 5 4 2 7 7 C 1.53040 * 109.52569 * 61.74239 * 6 5 4 8 8 C 1.53098 * 109.48614 * 239.90918 * 2 1 3 9 9 H 1.09002 * 109.52596 * 302.30166 * 8 2 1 10 10 N 1.46898 * 109.52760 * 62.49537 * 8 2 1 11 11 C 1.46903 * 111.00083 * 198.06367 * 10 8 2 12 12 C 1.50707 * 109.46857 * 75.53714 * 11 10 8 13 13 H 1.08001 * 119.99580 * 5.03317 * 12 11 10 14 14 C 1.37876 * 119.99648 * 185.03689 * 12 11 10 15 15 N 1.31507 * 120.00212 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99702 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47321 * 59.99956 * 16 14 12 18 18 H 1.48500 * 109.47445 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47345 * 300.00013 * 16 14 12 20 20 C 1.46902 * 111.00014 * 74.11318 * 10 8 2 21 21 C 1.53002 * 117.49792 * 234.21217 * 20 10 8 22 22 C 1.52997 * 117.49918 * 165.55297 * 20 10 8 23 23 H 1.09003 * 109.46883 * 304.46607 * 1 2 3 24 24 H 1.09001 * 109.46717 * 64.46361 * 1 2 3 25 25 H 1.09000 * 109.47197 * 184.46342 * 1 2 3 26 26 H 1.09003 * 109.46850 * 199.90141 * 3 2 1 27 27 H 1.09005 * 109.46896 * 319.90014 * 3 2 1 28 28 H 1.09003 * 109.47180 * 79.89861 * 3 2 1 29 29 H 1.09002 * 109.46303 * 59.10471 * 4 2 1 30 30 H 1.09000 * 109.46056 * 299.12587 * 4 2 1 31 31 H 1.00891 * 110.99745 * 62.35865 * 5 4 2 32 32 H 1.09000 * 109.46709 * 181.76126 * 6 5 4 33 33 H 1.09003 * 109.46714 * 301.74021 * 6 5 4 34 34 H 1.09005 * 109.49977 * 60.75890 * 7 6 5 35 35 H 1.08997 * 109.50683 * 180.84030 * 7 6 5 36 36 H 1.09003 * 109.47035 * 195.52929 * 11 10 8 37 37 H 1.08994 * 109.47205 * 315.53362 * 11 10 8 38 38 H 0.97004 * 120.00121 * 179.97438 * 15 14 12 39 39 H 1.08995 * 115.54865 * 19.87904 * 20 10 8 40 40 H 1.08998 * 117.49761 * 359.97438 * 21 20 10 41 41 H 1.09005 * 117.49983 * 145.01967 * 21 20 10 42 42 H 1.09003 * 117.50037 * 214.97764 * 22 20 10 43 43 H 1.08991 * 117.50128 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5094 -0.7421 1.2375 6 6 4.0228 -1.4729 0.0719 7 6 3.5707 -0.7718 -1.2111 8 6 2.0408 -0.7236 -1.2488 9 1 1.6448 -1.7390 -1.2690 10 7 1.6018 -0.0001 -2.4495 11 6 1.6886 -0.8555 -3.6407 12 6 0.5499 -1.8427 -3.6342 13 1 -0.2117 -1.7835 -2.8707 14 6 0.4806 -2.8215 -4.6028 15 7 1.4084 -2.8939 -5.5320 16 14 -0.9303 -4.0456 -4.5943 17 1 -2.2180 -3.3178 -4.7270 18 1 -0.7747 -4.9884 -5.7310 19 1 -0.9199 -4.8043 -3.3177 20 6 2.3748 1.2357 -2.6315 21 6 1.5932 2.5433 -2.7741 22 6 2.2877 1.9295 -3.9923 23 1 -0.3633 0.5816 0.8473 24 1 -0.3633 0.4430 -0.9273 25 1 -0.3633 -1.0245 0.0800 26 1 3.0739 1.4612 -0.3498 27 1 1.4223 2.0472 -0.6620 28 1 1.9933 1.8446 1.0118 29 1 1.6648 -1.7465 1.2543 30 1 1.6907 -0.2022 2.1389 31 1 3.8830 0.1945 1.2705 32 1 5.1119 -1.4962 0.1087 33 1 3.6372 -2.4924 0.0836 34 1 3.9673 0.2434 -1.2301 35 1 3.9395 -1.3228 -2.0763 36 1 1.6286 -0.2377 -4.5367 37 1 2.6363 -1.3938 -3.6332 38 1 1.3599 -3.5828 -6.2132 39 1 3.3294 1.2747 -2.1069 40 1 0.5054 2.4864 -2.7333 41 1 2.0338 3.4426 -2.3436 42 1 3.1849 2.4253 -4.3629 43 1 1.6572 1.4688 -4.7527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300873593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:13 Heat of formation + Delta-G solvation = 19.888392 kcal Electronic energy + Delta-G solvation = -20684.457375 eV Core-core repulsion = 17957.705496 eV Total energy + Delta-G solvation = -2726.751879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51730 -38.33567 -35.52640 -34.61208 -34.02577 -31.18874 -28.56625 -28.13174 -26.87525 -24.95599 -23.85429 -23.11060 -22.79799 -20.72053 -19.42135 -18.38991 -17.41833 -16.90527 -16.56955 -15.91171 -15.87798 -15.35597 -15.05998 -14.74034 -14.26484 -14.09059 -13.88370 -13.52013 -13.23816 -12.97282 -12.76244 -12.74718 -12.71020 -12.51184 -12.37646 -12.22867 -12.13682 -11.99877 -11.77236 -11.41521 -11.27439 -11.09266 -10.91590 -10.68746 -10.56011 -9.27212 -8.73828 -8.18833 -6.28121 1.36441 1.38695 1.46556 2.37451 2.97257 3.12257 3.25312 3.46202 3.73955 3.90137 4.03329 4.12442 4.15161 4.21575 4.40412 4.40921 4.50393 4.57382 4.71638 4.79058 4.83789 4.87767 4.92621 4.97497 5.01746 5.08226 5.08585 5.17617 5.22787 5.25285 5.28732 5.34721 5.43964 5.48405 5.63775 5.65207 5.69307 6.08154 6.13446 6.44909 6.56597 6.76808 6.89577 7.40733 8.90104 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.008373 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.691574 B = 3343.126896 C = 3876.661772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 C -0.143 4.143 4 C 0.071 3.929 5 N -0.677 5.677 6 C 0.069 3.931 7 C -0.184 4.184 8 C 0.109 3.891 9 H 0.044 0.956 10 N -0.499 5.499 11 C 0.208 3.792 12 C -0.515 4.515 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.001 3.999 21 C -0.144 4.144 22 C -0.204 4.204 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.348 0.652 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.010 0.990 37 H -0.037 1.037 38 H 0.262 0.738 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 9.107 12.459 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.083 4.083 3 C -0.199 4.199 4 C -0.059 4.059 5 N -0.306 5.306 6 C -0.062 4.062 7 C -0.224 4.224 8 C 0.000 4.000 9 H 0.062 0.938 10 N -0.220 5.220 11 C 0.082 3.918 12 C -0.553 4.553 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.196 1.196 20 C -0.108 4.108 21 C -0.182 4.182 22 C -0.242 4.242 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.166 0.834 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.028 0.972 37 H -0.019 1.019 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.123 0.877 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.885 8.573 12.800 15.673 hybrid contribution -0.065 -0.782 -1.846 2.006 sum 2.820 7.790 10.954 13.734 Atomic orbital electron populations 1.21610 0.94443 1.00490 1.01509 1.21156 0.96384 0.96669 0.94084 1.22200 1.00939 0.94715 1.02086 1.22126 0.87462 0.99987 0.96367 1.60718 1.07523 1.21926 1.40396 1.21867 1.00198 0.97229 0.86912 1.22945 0.98258 1.01605 0.99601 1.21512 0.91967 0.96213 0.90323 0.93810 1.61963 1.52098 1.04735 1.03213 1.19450 0.93724 0.90532 0.88096 1.21426 1.09278 1.12976 1.11644 0.92665 1.25813 0.98787 0.99647 0.95234 1.70073 1.35776 1.35370 1.16209 0.85581 0.79638 0.78612 0.77674 1.19481 1.20850 1.19554 1.22903 0.97615 0.90559 0.99696 1.23078 0.99219 0.95977 0.99942 1.23238 1.03489 1.05204 0.92275 0.91443 0.93399 0.94796 0.92860 0.91214 0.91662 0.92589 0.88688 0.83380 0.89498 0.92567 0.89953 0.94606 0.97212 1.01943 0.92908 0.87468 0.89883 0.86374 0.87732 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 8.31 71.98 0.60 -3.10 16 2 C -0.08 -2.29 0.59 -52.14 -0.03 -2.32 16 3 C -0.14 -3.35 6.26 71.98 0.45 -2.90 16 4 C 0.07 1.76 5.25 86.32 0.45 2.22 16 5 N -0.68 -16.08 6.82 -513.99 -3.51 -19.58 16 6 C 0.07 1.88 6.55 86.33 0.57 2.45 16 7 C -0.18 -6.02 4.50 30.65 0.14 -5.89 16 8 C 0.11 4.03 1.49 44.99 0.07 4.09 16 9 H 0.04 1.99 7.31 -2.39 -0.02 1.98 16 10 N -0.50 -20.65 3.76 -849.98 -3.20 -23.85 16 11 C 0.21 11.02 4.54 85.56 0.39 11.41 16 12 C -0.51 -29.56 8.50 25.60 0.22 -29.34 16 13 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 16 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.00 0.03 3.08 44.91 0.14 0.17 16 21 C -0.14 -4.15 8.20 30.62 0.25 -3.90 16 22 C -0.20 -6.98 9.56 30.62 0.29 -6.68 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.68 7.56 -2.39 -0.02 1.66 16 25 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.22 4.35 -2.39 -0.01 1.21 16 27 H 0.07 1.77 4.91 -2.38 -0.01 1.76 16 28 H 0.06 1.23 7.97 -2.39 -0.02 1.21 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.35 7.04 7.67 -89.70 -0.69 6.35 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.40 4.20 -2.38 -0.01 2.39 16 35 H 0.04 1.41 6.98 -2.39 -0.02 1.39 16 36 H 0.01 0.57 5.52 -2.39 -0.01 0.55 16 37 H -0.04 -2.19 6.75 -2.39 -0.02 -2.20 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.11 3.31 4.16 -2.39 -0.01 3.30 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.07 2.85 6.39 -2.39 -0.02 2.84 16 Total: -1.00 -63.42 310.18 -0.09 -63.52 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.31 Total: 22.36 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 3.99 Total: -33.16 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -6.42 Total: -100.13 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -63.42 -0.09 -63.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300873593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.404 kcal (2) G-P(sol) polarization free energy of solvation -63.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds