Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.53686 * 2 1 4 4 C 1.53038 * 109.50540 * 239.90278 * 2 1 3 5 5 N 1.46850 * 109.52278 * 299.23885 * 4 2 1 6 6 C 1.46904 * 111.00103 * 174.16191 * 5 4 2 7 7 C 1.52996 * 109.46982 * 193.92013 * 6 5 4 8 8 C 1.50705 * 115.54607 * 269.48070 * 7 6 5 9 9 H 1.08000 * 119.99634 * 115.08644 * 8 7 6 10 10 C 1.37878 * 120.00085 * 295.08219 * 8 7 6 11 11 N 1.31515 * 119.99638 * 358.77596 * 10 8 7 12 12 Si 1.86797 * 119.99912 * 178.77256 * 10 8 7 13 13 H 1.48496 * 109.47455 * 90.00229 * 12 10 8 14 14 H 1.48502 * 109.46862 * 210.00392 * 12 10 8 15 15 H 1.48498 * 109.47280 * 330.00241 * 12 10 8 16 16 C 1.52999 * 117.50004 * 123.77265 * 7 6 5 17 17 C 1.52996 * 60.00096 * 252.50343 * 16 7 6 18 18 C 1.46851 * 111.19871 * 298.25982 * 5 4 2 19 19 C 1.53042 * 109.57543 * 61.70927 * 18 5 4 20 20 C 1.53117 * 109.27478 * 300.91420 * 19 18 5 21 21 H 1.09001 * 109.52270 * 297.62507 * 20 19 18 22 22 N 1.46897 * 109.52190 * 177.49714 * 20 19 18 23 23 H 1.08997 * 109.47494 * 292.88938 * 1 2 3 24 24 H 1.09005 * 109.46882 * 52.89185 * 1 2 3 25 25 H 1.09003 * 109.47198 * 172.88515 * 1 2 3 26 26 H 1.09008 * 109.47187 * 180.09216 * 3 2 1 27 27 H 1.08994 * 109.47167 * 300.09793 * 3 2 1 28 28 H 1.09002 * 109.46512 * 60.09995 * 3 2 1 29 29 H 1.08994 * 109.46541 * 59.25216 * 4 2 1 30 30 H 1.08999 * 109.46573 * 179.23650 * 4 2 1 31 31 H 1.09005 * 109.46635 * 313.91680 * 6 5 4 32 32 H 1.08993 * 109.47298 * 73.91303 * 6 5 4 33 33 H 0.97003 * 119.99467 * 185.06515 * 11 10 8 34 34 H 1.08995 * 117.49706 * 0.02562 * 16 7 6 35 35 H 1.09003 * 117.49897 * 145.01568 * 16 7 6 36 36 H 1.08997 * 117.50649 * 252.50417 * 17 16 7 37 37 H 1.09002 * 117.49216 * 107.48504 * 17 16 7 38 38 H 1.08999 * 109.46096 * 181.75490 * 18 5 4 39 39 H 1.09001 * 109.45952 * 301.73336 * 18 5 4 40 40 H 1.08997 * 109.55451 * 180.94360 * 19 18 5 41 41 H 1.09000 * 109.45612 * 60.82401 * 19 18 5 42 42 H 1.00898 * 111.00087 * 60.13376 * 22 20 19 43 43 H 1.00907 * 111.00170 * 184.08175 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 1.5675 -2.1135 -1.2379 6 6 1.9223 -2.7996 -2.4875 7 6 1.1317 -4.1051 -2.5947 8 6 1.8008 -5.3203 -2.0058 9 1 1.3631 -5.8174 -1.1528 10 6 2.9716 -5.7973 -2.5560 11 7 3.4915 -5.2063 -3.6095 12 14 3.8191 -7.2829 -1.8050 13 1 3.3058 -8.5212 -2.4439 14 1 5.2839 -7.1818 -2.0271 15 1 3.5414 -7.3266 -0.3469 16 6 0.2685 -4.3079 -3.8415 17 6 -0.3924 -4.0186 -2.4923 18 6 2.0845 -2.8420 -0.0724 19 6 1.5761 -2.1823 1.2115 20 6 2.0411 -0.7239 1.2488 21 1 3.1304 -0.6893 1.2696 22 7 1.5060 -0.0686 2.4496 23 1 -0.3634 0.3997 0.9467 24 1 -0.3633 0.6200 -0.8196 25 1 -0.3634 -1.0198 -0.1273 26 1 3.1316 1.4407 -0.0017 27 1 1.6774 1.9566 -0.8891 28 1 1.6802 1.9556 0.8909 29 1 1.6669 -0.2189 -2.1389 30 1 3.1308 -0.7112 -1.2543 31 1 1.6813 -2.1581 -3.3352 32 1 2.9898 -3.0199 -2.4906 33 1 4.2737 -5.5845 -4.0411 34 1 0.2641 -3.5114 -4.5856 35 1 0.1845 -5.3204 -4.2362 36 1 -0.9113 -4.8406 -1.9993 37 1 -0.8318 -3.0315 -2.3486 38 1 1.7421 -3.8762 -0.1094 39 1 3.1742 -2.8195 -0.0842 40 1 1.9736 -2.7132 2.0766 41 1 0.4869 -2.2175 1.2311 42 1 1.8280 -0.5299 3.2872 43 1 1.7438 0.9120 2.4628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304232380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = 17.693725 kcal Electronic energy + Delta-G solvation = -20277.708216 eV Core-core repulsion = 17550.861169 eV Total energy + Delta-G solvation = -2726.847047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47848 -36.73933 -34.15999 -32.66783 -31.97364 -29.82737 -26.91615 -26.52845 -25.33796 -24.64879 -22.04606 -20.97830 -20.85804 -18.69230 -17.87371 -16.07964 -15.83225 -15.09303 -14.78030 -14.54650 -14.32354 -14.15788 -13.45950 -13.29290 -12.73303 -12.67723 -12.54941 -12.02112 -11.70184 -11.53180 -11.31081 -11.09825 -10.95772 -10.85680 -10.77907 -10.55752 -10.43854 -10.34547 -10.08436 -9.90436 -9.69645 -9.29767 -8.68156 -8.53196 -8.45955 -8.01315 -7.31596 -6.01917 -4.05837 3.27754 3.35246 3.37827 4.40162 4.58667 4.70398 4.93022 5.09886 5.23649 5.26540 5.58435 5.62836 5.69645 5.76596 5.81829 5.94362 6.03925 6.08854 6.14079 6.20059 6.23199 6.33837 6.38707 6.53721 6.58903 6.60899 6.67895 6.77132 6.88232 6.94046 6.98306 7.03637 7.12387 7.21814 7.30954 7.52333 7.55846 7.61805 7.88098 8.09780 8.14124 8.51823 8.94726 9.56932 11.05973 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.006958 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.219868 B = 4023.461197 C = 4458.287092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.052 4.052 3 C -0.143 4.143 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.104 3.896 7 C 0.057 3.943 8 C -0.487 4.487 9 H 0.059 0.941 10 C 0.070 3.930 11 N -0.881 5.881 12 Si 0.884 3.116 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.273 1.273 16 C -0.183 4.183 17 C -0.189 4.189 18 C 0.061 3.939 19 C -0.110 4.110 20 C 0.101 3.899 21 H 0.025 0.975 22 N -0.843 5.843 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.259 0.741 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.018 0.982 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.335 0.665 43 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 10.318 7.747 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.053 4.053 3 C -0.201 4.201 4 C -0.065 4.065 5 N -0.250 5.250 6 C -0.023 4.023 7 C 0.057 3.943 8 C -0.525 4.525 9 H 0.077 0.923 10 C -0.133 4.133 11 N -0.518 5.518 12 Si 0.712 3.288 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.221 4.221 17 C -0.226 4.226 18 C -0.067 4.067 19 C -0.148 4.148 20 C -0.010 4.010 21 H 0.043 0.957 22 N -0.373 5.373 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.848 10.147 7.399 12.877 hybrid contribution 2.564 -0.648 0.320 2.664 sum -0.284 9.499 7.719 12.244 Atomic orbital electron populations 1.21661 0.93227 1.02922 1.00276 1.20541 0.97419 0.93508 0.93840 1.21889 1.00223 0.96380 1.01633 1.22083 0.96416 0.91093 0.96892 1.61936 1.59279 1.00228 1.03528 1.21607 0.99554 0.93408 0.87762 1.18725 0.86711 0.93024 0.95889 1.20534 1.06573 1.10733 1.14652 0.92334 1.24964 0.96650 0.96541 0.95146 1.69969 1.22921 1.38600 1.20319 0.86715 0.78809 0.83450 0.79845 1.20675 1.21348 1.19786 1.22760 1.08756 0.99731 0.90879 1.22686 0.98936 0.99707 1.01288 1.22107 0.96107 0.99913 0.88577 1.21686 1.02540 0.93143 0.97424 1.21389 0.94968 0.94871 0.89754 0.95740 1.58792 1.67624 1.06612 1.04265 0.92487 0.94378 0.90862 0.93440 0.92557 0.92597 0.91528 0.96178 0.94168 0.93045 0.93109 0.92204 0.90790 0.91320 0.90949 0.87873 0.96381 0.92825 0.90324 0.85258 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 7.86 37.15 0.29 -1.49 16 2 C -0.05 -0.73 0.59 -154.43 -0.09 -0.83 16 3 C -0.14 -1.67 8.20 37.16 0.30 -1.37 16 4 C 0.06 1.08 4.17 -3.83 -0.02 1.07 16 5 N -0.53 -10.20 3.58 -234.66 -0.84 -11.04 16 6 C 0.10 2.36 4.82 -3.82 -0.02 2.35 16 7 C 0.06 1.39 1.11 -155.66 -0.17 1.22 16 8 C -0.49 -12.87 6.98 -34.44 -0.24 -13.11 16 9 H 0.06 1.56 7.71 -52.49 -0.40 1.15 16 10 C 0.07 1.87 5.27 -17.82 -0.09 1.77 16 11 N -0.88 -24.60 12.33 55.43 0.68 -23.92 16 12 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 C -0.18 -4.31 9.88 -26.73 -0.26 -4.58 16 17 C -0.19 -4.18 9.73 -26.73 -0.26 -4.44 16 18 C 0.06 1.19 5.19 -3.83 -0.02 1.17 16 19 C -0.11 -1.74 5.33 -26.65 -0.14 -1.88 16 20 C 0.10 1.40 2.49 -67.59 -0.17 1.23 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 N -0.84 -9.60 8.26 -4.56 -0.04 -9.64 16 23 H 0.06 0.79 7.33 -51.93 -0.38 0.41 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.22 6.19 -51.93 -0.32 0.90 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.57 6.63 -51.93 -0.34 0.23 16 29 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.91 7.64 -51.93 -0.40 0.51 16 32 H 0.05 1.33 7.01 -51.93 -0.36 0.96 16 33 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 34 H 0.06 1.34 8.03 -51.93 -0.42 0.93 16 35 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.10 2.26 5.76 -51.93 -0.30 1.96 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.31 6.75 -51.93 -0.35 0.96 16 42 H 0.34 3.38 9.04 -39.29 -0.36 3.03 16 43 H 0.33 3.32 7.15 -39.29 -0.28 3.04 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -26.84 323.62 -8.92 -35.76 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.69 Total: 7.04 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.89 Total: -18.88 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.19 Total: -44.60 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.84 -8.92 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304232380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.450 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds