Wall clock time and date at job start Mon Mar 30 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.53686 * 2 1 4 4 C 1.53038 * 109.50540 * 239.90278 * 2 1 3 5 5 N 1.46850 * 109.52278 * 299.23885 * 4 2 1 6 6 C 1.46904 * 111.00103 * 174.16191 * 5 4 2 7 7 C 1.52996 * 109.46982 * 193.92013 * 6 5 4 8 8 C 1.50705 * 115.54607 * 269.48070 * 7 6 5 9 9 H 1.08000 * 119.99634 * 115.08644 * 8 7 6 10 10 C 1.37878 * 120.00085 * 295.08219 * 8 7 6 11 11 N 1.31515 * 119.99638 * 358.77596 * 10 8 7 12 12 Si 1.86797 * 119.99912 * 178.77256 * 10 8 7 13 13 H 1.48496 * 109.47455 * 90.00229 * 12 10 8 14 14 H 1.48502 * 109.46862 * 210.00392 * 12 10 8 15 15 H 1.48498 * 109.47280 * 330.00241 * 12 10 8 16 16 C 1.52999 * 117.50004 * 123.77265 * 7 6 5 17 17 C 1.52996 * 60.00096 * 252.50343 * 16 7 6 18 18 C 1.46851 * 111.19871 * 298.25982 * 5 4 2 19 19 C 1.53042 * 109.57543 * 61.70927 * 18 5 4 20 20 C 1.53117 * 109.27478 * 300.91420 * 19 18 5 21 21 H 1.09001 * 109.52270 * 297.62507 * 20 19 18 22 22 N 1.46897 * 109.52190 * 177.49714 * 20 19 18 23 23 H 1.08997 * 109.47494 * 292.88938 * 1 2 3 24 24 H 1.09005 * 109.46882 * 52.89185 * 1 2 3 25 25 H 1.09003 * 109.47198 * 172.88515 * 1 2 3 26 26 H 1.09008 * 109.47187 * 180.09216 * 3 2 1 27 27 H 1.08994 * 109.47167 * 300.09793 * 3 2 1 28 28 H 1.09002 * 109.46512 * 60.09995 * 3 2 1 29 29 H 1.08994 * 109.46541 * 59.25216 * 4 2 1 30 30 H 1.08999 * 109.46573 * 179.23650 * 4 2 1 31 31 H 1.09005 * 109.46635 * 313.91680 * 6 5 4 32 32 H 1.08993 * 109.47298 * 73.91303 * 6 5 4 33 33 H 0.97003 * 119.99467 * 185.06515 * 11 10 8 34 34 H 1.08995 * 117.49706 * 0.02562 * 16 7 6 35 35 H 1.09003 * 117.49897 * 145.01568 * 16 7 6 36 36 H 1.08997 * 117.50649 * 252.50417 * 17 16 7 37 37 H 1.09002 * 117.49216 * 107.48504 * 17 16 7 38 38 H 1.08999 * 109.46096 * 181.75490 * 18 5 4 39 39 H 1.09001 * 109.45952 * 301.73336 * 18 5 4 40 40 H 1.08997 * 109.55451 * 180.94360 * 19 18 5 41 41 H 1.09000 * 109.45612 * 60.82401 * 19 18 5 42 42 H 1.00898 * 111.00087 * 60.13376 * 22 20 19 43 43 H 1.00907 * 111.00170 * 184.08175 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 1.5675 -2.1135 -1.2379 6 6 1.9223 -2.7996 -2.4875 7 6 1.1317 -4.1051 -2.5947 8 6 1.8008 -5.3203 -2.0058 9 1 1.3631 -5.8174 -1.1528 10 6 2.9716 -5.7973 -2.5560 11 7 3.4915 -5.2063 -3.6095 12 14 3.8191 -7.2829 -1.8050 13 1 3.3058 -8.5212 -2.4439 14 1 5.2839 -7.1818 -2.0271 15 1 3.5414 -7.3266 -0.3469 16 6 0.2685 -4.3079 -3.8415 17 6 -0.3924 -4.0186 -2.4923 18 6 2.0845 -2.8420 -0.0724 19 6 1.5761 -2.1823 1.2115 20 6 2.0411 -0.7239 1.2488 21 1 3.1304 -0.6893 1.2696 22 7 1.5060 -0.0686 2.4496 23 1 -0.3634 0.3997 0.9467 24 1 -0.3633 0.6200 -0.8196 25 1 -0.3634 -1.0198 -0.1273 26 1 3.1316 1.4407 -0.0017 27 1 1.6774 1.9566 -0.8891 28 1 1.6802 1.9556 0.8909 29 1 1.6669 -0.2189 -2.1389 30 1 3.1308 -0.7112 -1.2543 31 1 1.6813 -2.1581 -3.3352 32 1 2.9898 -3.0199 -2.4906 33 1 4.2737 -5.5845 -4.0411 34 1 0.2641 -3.5114 -4.5856 35 1 0.1845 -5.3204 -4.2362 36 1 -0.9113 -4.8406 -1.9993 37 1 -0.8318 -3.0315 -2.3486 38 1 1.7421 -3.8762 -0.1094 39 1 3.1742 -2.8195 -0.0842 40 1 1.9736 -2.7132 2.0766 41 1 0.4869 -2.2175 1.2311 42 1 1.8280 -0.5299 3.2872 43 1 1.7438 0.9120 2.4628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304232380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:40 Heat of formation + Delta-G solvation = 1.615537 kcal Electronic energy + Delta-G solvation = -20278.405418 eV Core-core repulsion = 17550.861169 eV Total energy + Delta-G solvation = -2727.544249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81638 -38.47731 -35.64909 -34.04352 -33.82057 -31.14440 -28.20744 -27.95251 -27.13617 -26.16992 -23.37206 -22.76617 -22.43092 -20.58288 -19.12972 -17.99849 -16.91857 -16.71275 -16.35655 -15.99298 -15.87432 -15.64150 -15.04616 -14.69057 -14.30716 -14.05161 -13.78574 -13.45042 -13.24803 -13.04228 -12.86178 -12.72872 -12.58233 -12.46968 -12.31686 -12.18272 -11.99488 -11.88354 -11.64162 -11.35616 -11.05908 -10.98699 -10.65906 -10.42758 -9.91659 -9.49516 -8.97292 -8.08453 -6.16893 1.38461 1.40839 1.49052 2.42004 3.09606 3.17485 3.61759 3.73586 3.80108 3.92284 4.11751 4.30053 4.41524 4.47638 4.54550 4.63040 4.65278 4.74187 4.78360 4.82020 4.87285 4.96190 4.98621 5.06635 5.10069 5.14018 5.18502 5.23210 5.30862 5.35900 5.42049 5.50384 5.51377 5.67147 5.69195 5.78512 5.87016 6.32546 6.38285 6.47614 6.53400 6.71703 6.89788 7.47828 8.98914 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.006958 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.219868 B = 4023.461197 C = 4458.287092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.138 4.138 4 C 0.062 3.938 5 N -0.520 5.520 6 C 0.119 3.881 7 C 0.035 3.965 8 C -0.494 4.494 9 H 0.051 0.949 10 C 0.026 3.974 11 N -0.909 5.909 12 Si 0.940 3.060 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C -0.188 4.188 17 C -0.163 4.163 18 C 0.067 3.933 19 C -0.101 4.101 20 C 0.109 3.891 21 H 0.019 0.981 22 N -0.838 5.838 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.010 0.990 31 H 0.039 0.961 32 H 0.014 0.986 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.073 0.927 39 H -0.001 1.001 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.346 0.654 43 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 11.721 9.324 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.050 4.050 3 C -0.196 4.196 4 C -0.067 4.067 5 N -0.244 5.244 6 C -0.009 4.009 7 C 0.034 3.966 8 C -0.532 4.532 9 H 0.069 0.931 10 C -0.174 4.174 11 N -0.547 5.547 12 Si 0.767 3.233 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.227 4.227 17 C -0.201 4.201 18 C -0.062 4.062 19 C -0.139 4.139 20 C -0.003 4.003 21 H 0.037 0.963 22 N -0.370 5.370 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.017 0.983 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.412 11.561 8.999 15.043 hybrid contribution 2.709 -1.074 -0.168 2.919 sum -0.703 10.487 8.831 13.728 Atomic orbital electron populations 1.21573 0.93110 1.01556 1.01076 1.20525 0.97343 0.94806 0.92287 1.21843 1.00370 0.94419 1.02950 1.22212 0.95921 0.89639 0.98911 1.61940 1.59056 1.01271 1.02108 1.21291 0.96963 0.93181 0.89463 1.18816 0.88058 0.93092 0.96622 1.20737 1.06805 1.11336 1.14284 0.93105 1.25591 0.97281 0.98996 0.95542 1.70078 1.23328 1.39825 1.21519 0.85821 0.77642 0.80543 0.79339 1.20324 1.21348 1.19155 1.22728 1.09253 0.99241 0.91456 1.22631 0.97367 1.00439 0.99629 1.21982 0.94889 0.98963 0.90369 1.21570 1.02030 0.94647 0.95645 1.21187 0.94610 0.93597 0.90905 0.96262 1.58685 1.67296 1.07379 1.03627 0.91418 0.93803 0.93254 0.93239 0.92018 0.90561 0.91248 0.97172 0.94290 0.96763 0.93310 0.91277 0.92285 0.91151 0.89455 0.90817 0.98254 0.91597 0.90814 0.84081 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 7.86 71.98 0.57 -2.49 16 2 C -0.05 -1.27 0.59 -52.13 -0.03 -1.30 16 3 C -0.14 -2.79 8.20 71.98 0.59 -2.20 16 4 C 0.06 2.04 4.17 86.33 0.36 2.40 16 5 N -0.52 -20.29 3.58 -896.34 -3.21 -23.50 16 6 C 0.12 5.55 4.82 86.30 0.42 5.96 16 7 C 0.03 1.72 1.11 -52.93 -0.06 1.66 16 8 C -0.49 -26.60 6.98 25.60 0.18 -26.43 16 9 H 0.05 2.75 7.71 -2.91 -0.02 2.73 16 10 C 0.03 1.40 5.27 84.65 0.45 1.84 16 11 N -0.91 -52.01 12.33 21.45 0.26 -51.74 16 12 Si 0.94 43.35 29.54 68.60 2.03 45.38 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 C -0.19 -8.94 9.88 30.59 0.30 -8.63 16 17 C -0.16 -7.15 9.73 30.59 0.30 -6.85 16 18 C 0.07 2.61 5.19 86.33 0.45 3.06 16 19 C -0.10 -3.08 5.33 30.65 0.16 -2.91 16 20 C 0.11 2.78 2.49 45.00 0.11 2.89 16 21 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 22 N -0.84 -16.34 8.26 -168.35 -1.39 -17.73 16 23 H 0.07 1.65 7.33 -2.39 -0.02 1.63 16 24 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.05 1.55 6.19 -2.39 -0.01 1.53 16 26 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.25 6.63 -2.39 -0.02 1.23 16 29 H 0.07 2.24 7.97 -2.39 -0.02 2.22 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.04 1.78 7.64 -2.38 -0.02 1.77 16 32 H 0.01 0.76 7.01 -2.39 -0.02 0.74 16 33 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 34 H 0.07 3.10 8.03 -2.39 -0.02 3.08 16 35 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.07 3.32 5.76 -2.39 -0.01 3.30 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.36 6.75 -2.39 -0.02 2.34 16 42 H 0.35 5.84 9.04 -89.70 -0.81 5.03 16 43 H 0.35 5.52 7.15 -89.69 -0.64 4.88 16 Total: -1.00 -57.96 323.62 1.01 -56.95 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.47 Total: 23.64 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.79 Total: -32.99 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.33 Total: -92.97 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -57.96 1.01 -56.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304232380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.566 kcal (2) G-P(sol) polarization free energy of solvation -57.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds