Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46845 * 111.00037 * 45.73392 * 11 10 9 13 13 C 1.53061 * 109.51657 * 185.87088 * 12 11 10 14 14 C 1.53026 * 109.26588 * 300.93688 * 13 12 11 15 15 C 1.53009 * 109.59121 * 177.63282 * 14 13 12 16 16 C 1.53055 * 109.27739 * 177.58503 * 15 14 13 17 17 N 1.46849 * 109.52078 * 300.95462 * 16 15 14 18 18 C 1.46850 * 111.23169 * 61.75545 * 17 16 15 19 19 C 1.53038 * 109.53229 * 297.56739 * 14 13 12 20 20 C 1.53042 * 109.31346 * 57.56356 * 14 13 12 21 21 C 1.46844 * 110.99851 * 170.00235 * 11 10 9 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09000 * 109.46008 * 305.88268 * 12 11 10 28 28 H 1.08995 * 109.46206 * 65.85407 * 12 11 10 29 29 H 1.09002 * 109.50493 * 181.00500 * 13 12 11 30 30 H 1.08994 * 109.53825 * 60.89764 * 13 12 11 31 31 H 1.08998 * 109.50812 * 297.52763 * 15 14 13 32 32 H 1.09006 * 109.50419 * 57.64761 * 15 14 13 33 33 H 1.09006 * 109.46508 * 180.93673 * 16 15 14 34 34 H 1.09000 * 109.46251 * 60.96788 * 16 15 14 35 35 H 1.00906 * 110.99723 * 185.87777 * 17 16 15 36 36 H 1.08997 * 109.46818 * 178.21409 * 18 17 16 37 37 H 1.09007 * 109.46484 * 58.23379 * 18 17 16 38 38 H 1.08992 * 109.50432 * 302.28974 * 19 14 13 39 39 H 1.08998 * 109.50380 * 62.37523 * 19 14 13 40 40 H 1.08995 * 109.50825 * 182.49169 * 20 14 13 41 41 H 1.09001 * 109.54032 * 62.38262 * 20 14 13 42 42 H 1.09005 * 109.46416 * 294.13046 * 21 11 10 43 43 H 1.08996 * 109.46445 * 54.11401 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.4187 -4.9118 -0.9802 13 6 -0.4120 -6.1908 -0.8501 14 6 0.4895 -7.4046 -1.0861 15 6 -0.3204 -8.6893 -0.8997 16 6 0.5721 -9.8968 -1.1962 17 7 1.0773 -9.8076 -2.5721 18 6 1.8993 -8.6053 -2.7599 19 6 1.0463 -7.3591 -2.5109 20 6 1.6461 -7.3786 -0.0842 21 6 2.4169 -6.0651 -0.2368 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 -0.2170 -4.0456 -0.7964 28 1 0.8351 -4.8498 -1.9856 29 1 -1.2119 -6.1822 -1.5906 30 1 -0.8422 -6.2459 0.1498 31 1 -0.6808 -8.7465 0.1273 32 1 -1.1689 -8.6871 -1.5841 33 1 -0.0066 -10.8133 -1.0805 34 1 1.4116 -9.9073 -0.5010 35 1 1.5903 -10.6393 -2.8236 36 1 2.2845 -8.5841 -3.7793 37 1 2.7325 -8.6215 -2.0571 38 1 0.2217 -7.3343 -3.2232 39 1 1.6601 -6.4667 -2.6335 40 1 2.3145 -8.2174 -0.2780 41 1 1.2522 -7.4537 0.9294 42 1 2.8242 -5.9981 -1.2457 43 1 3.2317 -6.0361 0.4865 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304553032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -12.666831 kcal Electronic energy + Delta-G solvation = -19677.185430 eV Core-core repulsion = 16949.021851 eV Total energy + Delta-G solvation = -2728.163579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32217 -37.16507 -34.10283 -32.67703 -31.00788 -30.67457 -29.60670 -27.32366 -24.45105 -23.58701 -23.10718 -22.13580 -20.90168 -19.47757 -17.81870 -16.82752 -16.43568 -15.26756 -14.94065 -14.52463 -14.39879 -14.16723 -14.07312 -13.96930 -13.56473 -13.14975 -12.69668 -12.23065 -12.09311 -11.80111 -11.68966 -11.45310 -11.21883 -11.12795 -10.90540 -10.87428 -10.78714 -10.53780 -10.15316 -10.01515 -9.85671 -9.76566 -9.26209 -9.04834 -8.51419 -8.32436 -7.57837 -5.99075 -4.01357 3.33986 3.38281 3.40724 4.08248 4.41355 4.56531 4.72698 4.76865 4.81258 5.15396 5.21618 5.31422 5.36746 5.41564 5.42593 5.51035 5.60541 5.67456 5.73170 5.78926 5.87386 5.93715 6.02248 6.03797 6.14169 6.23498 6.24268 6.33761 6.38079 6.45360 6.52991 6.65794 6.69889 6.89770 6.96572 7.21854 7.56993 7.67594 7.85273 7.88360 8.07582 8.44765 9.05114 9.62201 11.12270 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049599 B = 0.004264 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.387146 B = 6565.512396 C = 6687.694560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.051 3.949 13 C -0.104 4.104 14 C -0.057 4.057 15 C -0.105 4.105 16 C 0.057 3.943 17 N -0.690 5.690 18 C 0.057 3.943 19 C -0.110 4.110 20 C -0.105 4.105 21 C 0.055 3.945 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.024 0.976 25 H 0.017 0.983 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.338 0.662 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -19.173 -3.438 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.077 4.077 13 C -0.142 4.142 14 C -0.057 4.057 15 C -0.143 4.143 16 C -0.072 4.072 17 N -0.321 5.321 18 C -0.072 4.072 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.074 4.074 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.668 -18.809 -3.210 19.092 hybrid contribution 1.711 0.822 -0.329 1.926 sum 2.379 -17.987 -3.539 18.486 Atomic orbital electron populations 1.69950 1.06015 1.26706 1.50627 1.24983 0.94830 0.99150 0.95281 0.86658 0.79587 0.83158 0.78591 1.20315 1.21261 1.20220 1.21159 0.92957 0.91071 1.50933 0.92861 1.19234 0.94106 0.90483 0.97747 1.22300 0.96991 0.88337 0.98785 1.62020 1.11504 1.03346 1.49401 1.22202 0.94091 0.98314 0.93098 1.21642 0.97174 0.93457 1.01909 1.20539 0.95543 0.94890 0.94732 1.21620 0.98119 0.93288 1.01291 1.21950 0.97920 0.98739 0.88605 1.60276 1.42315 1.05010 1.24531 1.21962 0.94236 0.90663 1.00337 1.21715 0.99816 0.96736 0.96469 1.21690 0.96713 0.96474 0.99391 1.22057 0.95094 0.91300 0.98914 0.92935 0.96152 0.95725 0.96442 0.92116 0.88972 0.95488 0.92009 0.91313 0.91604 0.91327 0.91265 0.95035 0.84520 0.91248 0.94976 0.91392 0.91200 0.92394 0.91374 0.95478 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.56 4.22 -27.88 -0.12 0.44 16 10 C 0.06 1.36 5.21 -3.82 -0.02 1.34 16 11 N -0.54 -9.99 4.80 -234.65 -1.13 -11.12 16 12 C 0.05 0.90 4.60 -3.82 -0.02 0.88 16 13 C -0.10 -1.50 4.89 -26.69 -0.13 -1.63 16 14 C -0.06 -0.70 0.51 -154.45 -0.08 -0.78 16 15 C -0.11 -1.14 4.89 -26.70 -0.13 -1.27 16 16 C 0.06 0.54 6.30 -3.82 -0.02 0.52 16 17 N -0.69 -6.74 6.84 -113.79 -0.78 -7.52 16 18 C 0.06 0.60 6.31 -3.82 -0.02 0.57 16 19 C -0.11 -1.34 4.29 -26.68 -0.11 -1.46 16 20 C -0.11 -1.35 4.29 -26.68 -0.11 -1.46 16 21 C 0.05 0.84 5.18 -3.83 -0.02 0.82 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 24 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.09 1.89 5.81 -51.93 -0.30 1.59 16 28 H 0.03 0.48 6.58 -51.93 -0.34 0.14 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.30 6.58 -51.93 -0.34 -0.04 16 35 H 0.34 2.65 8.90 -39.29 -0.35 2.30 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.34 6.47 -51.92 -0.34 0.00 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.95 4.94 -51.93 -0.26 0.69 16 40 H 0.06 0.67 4.95 -51.93 -0.26 0.41 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.42 6.47 -51.93 -0.34 0.08 16 43 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -29.70 311.64 -10.15 -39.85 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.45 Total: -0.78 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.20 Total: -15.68 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -1.17 Total: -44.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.70 -10.15 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304553032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.180 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds