Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46845 * 111.00037 * 45.73392 * 11 10 9 13 13 C 1.53061 * 109.51657 * 185.87088 * 12 11 10 14 14 C 1.53026 * 109.26588 * 300.93688 * 13 12 11 15 15 C 1.53009 * 109.59121 * 177.63282 * 14 13 12 16 16 C 1.53055 * 109.27739 * 177.58503 * 15 14 13 17 17 N 1.46849 * 109.52078 * 300.95462 * 16 15 14 18 18 C 1.46850 * 111.23169 * 61.75545 * 17 16 15 19 19 C 1.53038 * 109.53229 * 297.56739 * 14 13 12 20 20 C 1.53042 * 109.31346 * 57.56356 * 14 13 12 21 21 C 1.46844 * 110.99851 * 170.00235 * 11 10 9 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09000 * 109.46008 * 305.88268 * 12 11 10 28 28 H 1.08995 * 109.46206 * 65.85407 * 12 11 10 29 29 H 1.09002 * 109.50493 * 181.00500 * 13 12 11 30 30 H 1.08994 * 109.53825 * 60.89764 * 13 12 11 31 31 H 1.08998 * 109.50812 * 297.52763 * 15 14 13 32 32 H 1.09006 * 109.50419 * 57.64761 * 15 14 13 33 33 H 1.09006 * 109.46508 * 180.93673 * 16 15 14 34 34 H 1.09000 * 109.46251 * 60.96788 * 16 15 14 35 35 H 1.00906 * 110.99723 * 185.87777 * 17 16 15 36 36 H 1.08997 * 109.46818 * 178.21409 * 18 17 16 37 37 H 1.09007 * 109.46484 * 58.23379 * 18 17 16 38 38 H 1.08992 * 109.50432 * 302.28974 * 19 14 13 39 39 H 1.08998 * 109.50380 * 62.37523 * 19 14 13 40 40 H 1.08995 * 109.50825 * 182.49169 * 20 14 13 41 41 H 1.09001 * 109.54032 * 62.38262 * 20 14 13 42 42 H 1.09005 * 109.46416 * 294.13046 * 21 11 10 43 43 H 1.08996 * 109.46445 * 54.11401 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.4187 -4.9118 -0.9802 13 6 -0.4120 -6.1908 -0.8501 14 6 0.4895 -7.4046 -1.0861 15 6 -0.3204 -8.6893 -0.8997 16 6 0.5721 -9.8968 -1.1962 17 7 1.0773 -9.8076 -2.5721 18 6 1.8993 -8.6053 -2.7599 19 6 1.0463 -7.3591 -2.5109 20 6 1.6461 -7.3786 -0.0842 21 6 2.4169 -6.0651 -0.2368 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 -0.2170 -4.0456 -0.7964 28 1 0.8351 -4.8498 -1.9856 29 1 -1.2119 -6.1822 -1.5906 30 1 -0.8422 -6.2459 0.1498 31 1 -0.6808 -8.7465 0.1273 32 1 -1.1689 -8.6871 -1.5841 33 1 -0.0066 -10.8133 -1.0805 34 1 1.4116 -9.9073 -0.5010 35 1 1.5903 -10.6393 -2.8236 36 1 2.2845 -8.5841 -3.7793 37 1 2.7325 -8.6215 -2.0571 38 1 0.2217 -7.3343 -3.2232 39 1 1.6601 -6.4667 -2.6335 40 1 2.3145 -8.2174 -0.2780 41 1 1.2522 -7.4537 0.9294 42 1 2.8242 -5.9981 -1.2457 43 1 3.2317 -6.0361 0.4865 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304553032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -32.981276 kcal Electronic energy + Delta-G solvation = -19678.066330 eV Core-core repulsion = 16949.021851 eV Total energy + Delta-G solvation = -2729.044480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41777 -38.43509 -35.66277 -34.42193 -32.19832 -31.75131 -31.21334 -28.73393 -26.17763 -24.98775 -24.07854 -23.33434 -22.31436 -20.97245 -18.91044 -18.58537 -17.64015 -16.61638 -16.56553 -16.00860 -15.71205 -15.36936 -15.26301 -15.09592 -14.77839 -14.45412 -14.24609 -13.84251 -13.32416 -13.09817 -13.03867 -12.84589 -12.69597 -12.51998 -12.39383 -12.17621 -12.09096 -12.00744 -11.83331 -11.44781 -11.26883 -11.01972 -10.98451 -10.80313 -10.53300 -9.27247 -9.10552 -8.21163 -6.32856 1.39079 1.42432 1.50401 2.39440 3.08734 3.12019 3.35006 3.71894 3.74759 3.80875 4.18947 4.24049 4.30464 4.35219 4.39564 4.46736 4.50660 4.56541 4.59430 4.65335 4.69407 4.79253 4.86393 4.93865 4.96533 5.00258 5.03657 5.10752 5.13855 5.21886 5.26919 5.33077 5.43369 5.47730 5.52122 5.65895 5.77589 6.09426 6.12377 6.33358 6.37062 6.57988 6.83352 7.36193 8.90616 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049599 B = 0.004264 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.387146 B = 6565.512396 C = 6687.694560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.078 3.922 11 N -0.545 5.545 12 C 0.056 3.944 13 C -0.097 4.097 14 C -0.053 4.053 15 C -0.102 4.102 16 C 0.059 3.941 17 N -0.696 5.696 18 C 0.062 3.938 19 C -0.108 4.108 20 C -0.096 4.096 21 C 0.053 3.947 22 H 0.264 0.736 23 H 0.000 1.000 24 H -0.008 1.008 25 H 0.017 0.983 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.352 0.648 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.029 0.971 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -20.643 -3.615 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.050 4.050 11 N -0.270 5.270 12 C -0.072 4.072 13 C -0.135 4.135 14 C -0.053 4.053 15 C -0.140 4.140 16 C -0.070 4.070 17 N -0.328 5.328 18 C -0.067 4.067 19 C -0.145 4.145 20 C -0.134 4.134 21 C -0.074 4.074 22 H 0.073 0.927 23 H 0.018 0.982 24 H 0.010 0.990 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.170 0.830 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.893 -20.312 -3.390 20.680 hybrid contribution 1.286 1.264 -0.288 1.826 sum 3.179 -19.048 -3.678 19.659 Atomic orbital electron populations 1.70094 1.07805 1.27886 1.51267 1.25953 0.95756 1.03289 0.94516 0.85487 0.78281 0.77999 0.79190 1.19197 1.20690 1.19116 1.21600 0.93496 0.92342 1.51194 0.92292 1.19042 0.94251 0.92122 0.95143 1.21972 0.95763 0.88519 0.98732 1.61999 1.12048 1.02984 1.49963 1.22093 0.93745 0.98783 0.92619 1.21593 0.97264 0.92762 1.01912 1.20501 0.95223 0.94711 0.94854 1.21582 0.97977 0.92789 1.01650 1.21952 0.97946 0.98570 0.88528 1.60232 1.42512 1.05311 1.24765 1.21881 0.93841 0.90065 1.00950 1.21655 0.99629 0.97193 0.96065 1.21642 0.96839 0.95537 0.99332 1.22173 0.95025 0.91010 0.99234 0.92709 0.98199 0.98976 0.96514 0.91978 0.92746 0.95897 0.91231 0.91785 0.90983 0.91732 0.89640 0.94576 0.82960 0.90471 0.94678 0.92054 0.92946 0.90169 0.91596 0.95242 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.74 4.22 29.85 0.13 1.86 16 10 C 0.08 3.45 5.21 86.30 0.45 3.90 16 11 N -0.54 -20.58 4.80 -896.29 -4.30 -24.88 16 12 C 0.06 2.05 4.60 86.33 0.40 2.45 16 13 C -0.10 -2.82 4.89 30.62 0.15 -2.67 16 14 C -0.05 -1.23 0.51 -52.14 -0.03 -1.26 16 15 C -0.10 -1.97 4.89 30.62 0.15 -1.83 16 16 C 0.06 0.94 6.30 86.33 0.54 1.48 16 17 N -0.70 -11.50 6.84 -513.91 -3.52 -15.01 16 18 C 0.06 1.14 6.31 86.33 0.54 1.69 16 19 C -0.11 -2.50 4.29 30.63 0.13 -2.37 16 20 C -0.10 -2.27 4.29 30.63 0.13 -2.14 16 21 C 0.05 1.57 5.18 86.33 0.45 2.02 16 22 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 23 H 0.00 -0.01 6.21 -2.39 -0.01 -0.03 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.05 2.40 5.81 -2.39 -0.01 2.39 16 28 H 0.02 0.85 6.58 -2.39 -0.02 0.84 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.04 0.56 6.58 -2.39 -0.02 0.54 16 35 H 0.35 4.35 8.90 -89.69 -0.80 3.55 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 0.64 6.47 -2.38 -0.02 0.62 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.40 4.94 -2.39 -0.01 1.38 16 40 H 0.08 1.60 4.95 -2.39 -0.01 1.58 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.03 0.87 6.47 -2.38 -0.02 0.86 16 43 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 Total: -1.00 -64.71 311.64 -1.59 -66.30 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.18 Total: 12.00 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 3.74 Total: -28.00 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -7.54 Total: -97.14 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.71 -1.59 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304553032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.320 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds