Wall clock time and date at job start Mon Mar 30 2020 04:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.09004 * 109.47039 * 302.39122 * 3 2 1 5 5 C 1.50697 * 109.46702 * 182.39583 * 3 2 1 6 6 H 1.08002 * 119.99448 * 239.99520 * 5 3 2 7 7 C 1.37873 * 120.00351 * 59.99995 * 5 3 2 8 8 N 1.31517 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00131 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47205 * 90.00178 * 9 7 5 11 11 H 1.48500 * 109.47135 * 210.00254 * 9 7 5 12 12 H 1.48503 * 109.47038 * 330.00155 * 9 7 5 13 13 N 1.46897 * 109.47114 * 62.39678 * 3 2 1 14 14 C 1.46896 * 111.00180 * 64.32729 * 13 3 2 15 15 C 1.46901 * 111.00031 * 188.28449 * 13 3 2 16 16 H 1.08998 * 109.67825 * 302.03845 * 15 13 3 17 17 C 1.53124 * 109.57427 * 62.35468 * 15 13 3 18 18 N 1.46949 * 109.35125 * 119.88103 * 17 15 13 19 19 C 1.46902 * 111.05850 * 61.95149 * 18 17 15 20 20 C 1.53143 * 109.36938 * 297.99699 * 19 18 17 21 21 C 1.53387 * 108.82790 * 0.02562 * 20 19 18 22 22 C 1.53391 * 108.59412 * 301.03234 * 21 20 19 23 23 C 1.46945 * 110.96696 * 297.90804 * 18 17 15 24 24 H 1.08996 * 109.46890 * 294.90512 * 1 2 3 25 25 H 1.08994 * 109.47111 * 54.90773 * 1 2 3 26 26 H 1.09000 * 109.47011 * 174.90581 * 1 2 3 27 27 H 1.09003 * 109.46546 * 240.00259 * 2 1 3 28 28 H 1.08996 * 109.47303 * 120.00292 * 2 1 3 29 29 H 0.96999 * 119.99825 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47297 * 183.95584 * 14 13 3 31 31 H 1.09001 * 109.47174 * 303.95310 * 14 13 3 32 32 H 1.08993 * 109.47223 * 63.95449 * 14 13 3 33 33 H 1.08998 * 109.49548 * 359.91666 * 17 15 13 34 34 H 1.08998 * 109.51400 * 239.85499 * 17 15 13 35 35 H 1.08997 * 109.49328 * 178.02809 * 19 18 17 36 36 H 1.09004 * 109.48686 * 57.95831 * 19 18 17 37 37 H 1.09000 * 109.57800 * 240.20447 * 20 19 18 38 38 H 1.08999 * 109.57811 * 119.81365 * 20 19 18 39 39 H 1.08994 * 110.11573 * 180.38882 * 21 20 19 40 40 H 1.09000 * 109.57563 * 178.80642 * 22 21 20 41 41 H 1.08998 * 109.57438 * 299.05554 * 22 21 20 42 42 H 1.09006 * 109.48804 * 302.11462 * 23 18 17 43 43 H 1.08999 * 109.51097 * 182.05865 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6421 1.9686 -0.8678 5 6 3.5458 1.4429 -0.0594 6 1 4.1174 1.8994 0.7352 7 6 4.1938 0.8605 -1.1280 8 7 3.4977 0.3042 -2.0953 9 14 6.0603 0.8616 -1.2019 10 1 6.5827 -0.3601 -0.5387 11 1 6.4995 0.8812 -2.6203 12 1 6.5826 2.0647 -0.5054 13 7 1.5982 2.1181 1.2273 14 6 2.1993 1.4976 2.4154 15 6 1.8988 3.5550 1.1747 16 1 2.9691 3.7010 1.0287 17 6 1.1307 4.1978 0.0165 18 7 0.2349 5.2366 0.5433 19 6 0.9965 6.3050 1.2040 20 6 1.7601 5.7217 2.3964 21 6 1.4641 4.2194 2.4868 22 6 -0.0487 4.0281 2.6536 23 6 -0.7624 4.6583 1.4545 24 1 -0.3633 0.4328 0.9321 25 1 -0.3633 0.5908 -0.8408 26 1 -0.3633 -1.0236 -0.0912 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9536 -0.1058 -2.8469 30 1 1.8016 1.9709 3.3131 31 1 1.9612 0.4340 2.4296 32 1 3.2811 1.6274 2.3850 33 1 0.5430 3.4369 -0.4969 34 1 1.8357 4.6463 -0.6835 35 1 0.3114 7.0773 1.5536 36 1 1.7033 6.7386 0.4965 37 1 1.4364 6.2138 3.3136 38 1 2.8300 5.8751 2.2554 39 1 1.9928 3.7834 3.3344 40 1 -0.2795 2.9637 2.6983 41 1 -0.3788 4.5122 3.5727 42 1 -1.3348 3.8936 0.9291 43 1 -1.4357 5.4418 1.8020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309238705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:54 Heat of formation + Delta-G solvation = 10.261735 kcal Electronic energy + Delta-G solvation = -20799.474371 eV Core-core repulsion = 18072.305049 eV Total energy + Delta-G solvation = -2727.169322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41989 -36.72364 -32.94173 -31.70019 -31.09998 -30.61249 -28.92387 -26.80965 -24.65284 -23.03288 -22.56980 -22.35079 -21.06282 -18.91301 -17.10432 -16.25755 -15.98937 -15.83827 -15.60759 -14.71590 -13.90802 -13.33930 -13.24017 -12.74407 -12.65356 -12.43026 -12.08716 -11.92947 -11.73962 -11.69446 -11.53691 -11.33902 -11.14834 -10.98346 -10.90027 -10.65413 -10.48819 -10.30471 -10.00559 -9.82359 -9.74262 -9.63655 -9.35038 -8.99463 -8.35067 -7.80441 -7.06780 -5.97931 -4.10881 3.25499 3.33217 3.35486 4.39359 4.43070 4.87414 4.97753 5.19897 5.27151 5.39797 5.50693 5.54870 5.64375 5.75765 5.81793 5.91028 6.03210 6.14134 6.16584 6.25888 6.29066 6.33314 6.41035 6.46123 6.55699 6.59707 6.65482 6.70791 6.76206 6.78314 6.81726 7.12101 7.18924 7.35883 7.47633 7.53610 7.64604 7.77596 7.99840 8.18446 8.35780 8.49393 8.99214 9.56298 11.00939 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.008088 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.506290 B = 3461.192492 C = 3923.395253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.211 3.789 4 H 0.042 0.958 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.527 5.527 14 C 0.031 3.969 15 C 0.068 3.932 16 H 0.045 0.955 17 C 0.065 3.935 18 N -0.532 5.532 19 C 0.054 3.946 20 C -0.149 4.149 21 C -0.086 4.086 22 C -0.137 4.137 23 C 0.061 3.939 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.023 0.977 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 7.309 7.381 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.105 3.895 4 H 0.060 0.940 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.251 5.251 14 C -0.117 4.117 15 C -0.043 4.043 16 H 0.063 0.937 17 C -0.063 4.063 18 N -0.253 5.253 19 C -0.075 4.075 20 C -0.188 4.188 21 C -0.106 4.106 22 C -0.176 4.176 23 C -0.068 4.068 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.447 7.381 6.789 11.922 hybrid contribution 2.641 -0.402 0.620 2.742 sum -3.807 6.979 7.409 10.867 Atomic orbital electron populations 1.21686 0.98871 0.98270 1.00471 1.21601 0.92134 0.99270 1.01908 1.19312 0.92505 0.90857 0.86844 0.93989 1.21708 0.92838 1.37216 1.06214 0.92797 1.24886 0.97736 0.95149 0.95569 1.69870 1.34870 1.37638 1.09912 0.86723 0.86531 0.78288 0.77196 1.20789 1.21194 1.20195 1.62608 1.57550 1.00604 1.04297 1.22216 0.97517 0.99317 0.92674 1.22039 0.98217 0.90133 0.93878 0.93657 1.22280 0.95028 0.93125 0.95836 1.62591 1.15848 1.11811 1.35036 1.22144 0.96457 0.94244 0.94659 1.22277 1.00772 0.96454 0.99330 1.21254 0.96491 0.94342 0.98488 1.22068 0.95149 1.02436 0.97919 1.22058 0.94193 0.98131 0.92371 0.93597 0.94218 0.95737 0.89118 0.94946 0.92937 0.94099 0.92209 0.95518 0.89317 0.91287 0.91443 0.91124 0.92317 0.92084 0.91044 0.90344 0.93419 0.90723 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.71 37.16 0.36 -2.35 16 2 C -0.11 -2.57 5.06 -26.73 -0.14 -2.71 16 3 C 0.21 4.99 1.49 -68.87 -0.10 4.89 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 5 C -0.54 -14.13 7.09 -34.44 -0.24 -14.37 16 6 H 0.05 1.44 5.84 -52.49 -0.31 1.13 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.53 11.30 55.43 0.63 -23.90 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.53 -10.56 3.20 -228.00 -0.73 -11.29 16 14 C 0.03 0.61 8.40 60.06 0.50 1.11 16 15 C 0.07 1.27 1.73 -67.46 -0.12 1.16 16 16 H 0.05 0.98 6.98 -51.93 -0.36 0.62 16 17 C 0.07 1.20 5.14 -3.73 -0.02 1.18 16 18 N -0.53 -8.36 5.22 -234.29 -1.22 -9.58 16 19 C 0.05 0.74 6.10 -3.75 -0.02 0.71 16 20 C -0.15 -2.04 5.76 -26.46 -0.15 -2.19 16 21 C -0.09 -1.35 2.37 -90.03 -0.21 -1.56 16 22 C -0.14 -1.97 5.54 -26.47 -0.15 -2.12 16 23 C 0.06 0.88 6.09 -3.74 -0.02 0.86 16 24 H 0.04 0.87 7.83 -51.93 -0.41 0.47 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.37 6.01 -51.93 -0.31 2.06 16 28 H 0.03 0.75 6.31 -51.93 -0.33 0.42 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.04 0.69 6.14 -51.93 -0.32 0.37 16 31 H 0.06 1.17 6.19 -51.93 -0.32 0.85 16 32 H 0.03 0.56 6.37 -51.93 -0.33 0.23 16 33 H 0.09 1.79 6.50 -51.93 -0.34 1.45 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.14 6.44 -51.93 -0.33 0.80 16 40 H 0.08 1.24 7.54 -51.93 -0.39 0.85 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -26.26 308.47 -9.54 -35.80 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.44 Total: 1.95 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.41 Total: -13.65 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -1.33 Total: -44.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.26 -9.54 -35.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309238705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.057 kcal (2) G-P(sol) polarization free energy of solvation -26.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds