Wall clock time and date at job start Mon Mar 30 2020 04:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47065 * 2 1 4 4 H 1.08997 * 109.47142 * 55.86830 * 3 2 1 5 5 C 1.50705 * 109.47001 * 175.87161 * 3 2 1 6 6 H 1.08002 * 119.99778 * 119.99770 * 5 3 2 7 7 C 1.37871 * 120.00026 * 299.99686 * 5 3 2 8 8 N 1.31522 * 120.00107 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00147 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47079 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47226 * 120.00367 * 9 7 5 12 12 H 1.48501 * 109.47073 * 240.00078 * 9 7 5 13 13 N 1.46900 * 109.46875 * 295.87040 * 3 2 1 14 14 C 1.46900 * 110.99945 * 294.82440 * 13 3 2 15 15 C 1.46896 * 110.99963 * 170.87593 * 13 3 2 16 16 H 1.09001 * 109.68432 * 57.94795 * 15 13 3 17 17 C 1.53141 * 109.57959 * 297.62222 * 15 13 3 18 18 N 1.46907 * 109.37036 * 240.19768 * 17 15 13 19 19 C 1.46942 * 111.05536 * 297.99985 * 18 17 15 20 20 C 1.53124 * 109.35436 * 61.95756 * 19 18 17 21 21 C 1.53379 * 109.58011 * 178.27691 * 15 13 3 22 22 C 1.53397 * 108.59649 * 60.84144 * 21 15 13 23 23 C 1.46952 * 111.05537 * 61.99343 * 18 17 15 24 24 H 1.09003 * 109.46909 * 175.25314 * 1 2 3 25 25 H 1.08992 * 109.47079 * 295.25059 * 1 2 3 26 26 H 1.08999 * 109.46464 * 55.25707 * 1 2 3 27 27 H 1.08997 * 109.47721 * 239.99367 * 2 1 3 28 28 H 1.09007 * 109.46593 * 119.99973 * 2 1 3 29 29 H 0.97000 * 119.99889 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47493 * 296.05352 * 14 13 3 31 31 H 1.09004 * 109.46940 * 56.05074 * 14 13 3 32 32 H 1.08995 * 109.47294 * 176.04290 * 14 13 3 33 33 H 1.09000 * 109.49241 * 120.22821 * 17 15 13 34 34 H 1.08997 * 109.50388 * 0.17372 * 17 15 13 35 35 H 1.08999 * 109.49096 * 181.92015 * 19 18 17 36 36 H 1.08999 * 109.49202 * 301.98979 * 19 18 17 37 37 H 1.08995 * 109.57863 * 240.25434 * 20 19 18 38 38 H 1.09002 * 109.68339 * 119.93053 * 20 19 18 39 39 H 1.08998 * 110.11771 * 299.40364 * 21 15 13 40 40 H 1.08999 * 109.57448 * 178.80916 * 22 21 15 41 41 H 1.08999 * 109.57371 * 299.06230 * 22 21 15 42 42 H 1.08999 * 109.48933 * 58.00852 * 23 18 17 43 43 H 1.08996 * 109.48874 * 178.07593 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6175 1.9772 0.8506 5 6 3.5436 1.4437 0.1023 6 1 4.1377 1.8922 -0.6802 7 6 4.1607 0.8723 1.1948 8 7 3.4372 0.3257 2.1475 9 14 6.0243 0.8744 1.3220 10 1 6.6011 1.5454 0.1293 11 1 6.4360 1.6036 2.5483 12 1 6.5175 -0.5247 1.3890 13 7 1.6335 2.1055 -1.2462 14 6 2.2838 1.4859 -2.4086 15 6 1.9145 3.5463 -1.1918 16 1 2.9770 3.7065 -1.0090 17 6 1.0978 4.1863 -0.0655 18 7 0.2074 5.2094 -0.6299 19 6 0.9776 6.2847 -1.2701 20 6 1.7914 5.7045 -2.4302 21 6 1.5180 4.1979 -2.5225 22 6 0.0147 3.9861 -2.7422 23 6 -0.7493 4.6144 -1.5734 24 1 -0.3633 -1.0242 -0.0850 25 1 -0.3633 0.4383 0.9294 26 1 -0.3632 0.5857 -0.8445 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.8714 -0.0766 2.9159 30 1 3.3621 1.6293 -2.3409 31 1 2.0594 0.4193 -2.4247 32 1 1.9122 1.9491 -3.3226 33 1 1.7722 4.6488 0.6552 34 1 0.5026 3.4210 0.4326 35 1 0.2949 7.0450 -1.6493 36 1 1.6525 6.7326 -0.5407 37 1 2.8534 5.8726 -2.2514 38 1 1.4972 6.1868 -3.3624 39 1 2.0931 3.7620 -3.3394 40 1 -0.2887 4.4619 -3.6748 41 1 -0.2005 2.9186 -2.7900 42 1 -1.3318 3.8462 -1.0647 43 1 -1.4179 5.3884 -1.9500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309238707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:56 Heat of formation + Delta-G solvation = -5.184852 kcal Electronic energy + Delta-G solvation = -20796.825412 eV Core-core repulsion = 18068.986276 eV Total energy + Delta-G solvation = -2727.839136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74983 -38.41069 -34.77123 -33.34638 -32.61926 -31.74092 -30.43180 -28.68105 -26.37363 -24.76257 -23.73412 -23.67913 -22.57026 -20.75857 -18.68926 -17.87044 -17.51835 -17.11656 -17.02505 -16.55108 -15.54005 -15.06451 -14.81184 -14.48084 -13.86851 -13.74896 -13.61761 -13.47400 -13.22013 -13.07725 -12.98082 -12.88025 -12.78453 -12.65682 -12.51009 -12.44902 -12.09676 -11.88248 -11.58413 -11.52519 -11.28673 -11.10708 -11.04499 -10.70373 -10.40511 -9.08743 -8.84562 -8.01909 -6.23989 1.32195 1.35856 1.44264 2.38332 3.14784 3.19175 3.37329 3.78566 3.95704 4.08073 4.32955 4.39195 4.41098 4.46670 4.51127 4.53660 4.58838 4.71370 4.78331 4.82316 4.92759 4.96128 5.02688 5.05430 5.09568 5.10681 5.15456 5.23250 5.33692 5.35523 5.37980 5.45677 5.52385 5.53266 5.65019 5.82235 6.08979 6.18946 6.25000 6.30494 6.43376 6.73456 6.98607 7.46184 8.92003 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.008059 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.838526 B = 3473.702536 C = 3928.090318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.012 0.988 5 C -0.546 4.546 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.517 5.517 14 C 0.038 3.962 15 C 0.069 3.931 16 H 0.009 0.991 17 C 0.075 3.925 18 N -0.537 5.537 19 C 0.052 3.948 20 C -0.143 4.143 21 C -0.084 4.084 22 C -0.129 4.129 23 C 0.060 3.940 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.260 0.740 30 H 0.005 0.995 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 8.475 -9.520 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.030 0.970 5 C -0.585 4.585 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.240 5.240 14 C -0.111 4.111 15 C -0.042 4.042 16 H 0.027 0.973 17 C -0.054 4.054 18 N -0.257 5.257 19 C -0.076 4.076 20 C -0.183 4.183 21 C -0.104 4.104 22 C -0.168 4.168 23 C -0.068 4.068 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.177 8.548 -8.975 14.323 hybrid contribution 2.925 -0.732 0.078 3.016 sum -4.252 7.815 -8.897 12.583 Atomic orbital electron populations 1.21561 0.96256 0.99857 1.00549 1.21447 0.94495 0.98399 1.00148 1.19044 0.91260 0.91327 0.87164 0.96970 1.21975 0.94379 1.36968 1.05177 0.93819 1.25542 1.01344 0.95182 0.95638 1.70001 1.35965 1.38878 1.09953 0.85786 0.82157 0.77668 0.77662 1.20065 1.20799 1.20611 1.62562 1.56398 1.01452 1.03620 1.22206 0.95886 0.99391 0.93617 1.22081 0.96252 0.89441 0.96389 0.97270 1.22005 0.94524 0.93463 0.95393 1.62576 1.17407 1.11174 1.34570 1.22261 0.96554 0.93880 0.94934 1.22245 1.00420 0.94882 1.00720 1.21252 0.97670 0.95485 0.95947 1.22002 0.93679 1.01911 0.99189 1.22137 0.94287 0.98669 0.91687 0.93726 0.95009 0.92224 0.95179 0.92193 0.93033 0.97673 0.92613 0.91115 0.93053 0.91702 0.88636 0.91522 0.92809 0.89514 0.91081 0.90610 0.91737 0.91897 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.85 71.98 0.71 -4.24 16 2 C -0.11 -5.04 5.13 30.60 0.16 -4.89 16 3 C 0.22 10.71 1.47 44.17 0.06 10.78 16 4 H 0.01 0.68 6.23 -2.39 -0.01 0.67 16 5 C -0.55 -29.46 7.10 25.60 0.18 -29.28 16 6 H 0.04 2.42 5.84 -2.91 -0.02 2.40 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -51.86 11.30 21.45 0.24 -51.62 16 9 Si 0.94 44.06 29.54 68.60 2.03 46.09 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.52 -20.94 3.09 -875.19 -2.71 -23.64 16 14 C 0.04 1.44 8.38 127.69 1.07 2.51 16 15 C 0.07 2.61 1.74 45.09 0.08 2.68 16 16 H 0.01 0.41 7.04 -2.39 -0.02 0.40 16 17 C 0.08 2.80 5.13 86.35 0.44 3.24 16 18 N -0.54 -16.02 5.22 -895.18 -4.67 -20.69 16 19 C 0.05 1.28 6.09 86.34 0.53 1.81 16 20 C -0.14 -3.51 5.75 30.77 0.18 -3.34 16 21 C -0.08 -2.45 2.38 -10.40 -0.02 -2.48 16 22 C -0.13 -3.31 5.54 30.77 0.17 -3.14 16 23 C 0.06 1.57 6.09 86.33 0.53 2.09 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 2.23 7.60 -2.39 -0.02 2.21 16 27 H 0.03 1.40 6.26 -2.39 -0.01 1.38 16 28 H 0.06 3.24 5.97 -2.38 -0.01 3.22 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.00 0.20 6.32 -2.39 -0.02 0.19 16 31 H 0.06 2.16 6.19 -2.39 -0.01 2.15 16 32 H 0.07 2.27 6.14 -2.39 -0.01 2.26 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.72 6.51 -2.39 -0.02 2.70 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 2.09 6.43 -2.39 -0.02 2.08 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.86 7.53 -2.39 -0.02 1.84 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -57.85 308.21 0.38 -57.46 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.97 Total: 14.95 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.53 Total: -22.55 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -7.14 Total: -95.95 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -57.85 0.38 -57.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309238707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.280 kcal (2) G-P(sol) polarization free energy of solvation -57.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds