Wall clock time and date at job start Mon Mar 30 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47499 * 240.00169 * 3 2 1 5 5 H 1.48508 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 119.99807 * 3 2 1 7 7 C 1.37872 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47244 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47182 * 184.00463 * 11 10 9 13 13 C 1.43634 * 110.99909 * 67.10798 * 12 11 10 14 14 C 1.50686 * 115.42764 * 175.22993 * 13 12 11 15 15 C 1.52033 * 112.07477 * 90.22565 * 14 13 12 16 16 H 1.08993 * 111.16457 * 37.45899 * 15 14 13 17 17 C 1.53827 * 109.17437 * 160.51182 * 15 14 13 18 18 N 1.47206 * 107.84017 * 117.96105 * 17 15 14 19 19 C 1.47589 * 107.67367 * 339.75957 * 18 17 15 20 20 C 1.53615 * 105.61559 * 30.10955 * 19 18 17 21 21 H 1.09006 * 109.62067 * 89.72046 * 20 19 18 22 22 C 1.51662 * 110.87716 * 210.40194 * 20 19 18 23 23 C 1.49931 * 111.00148 * 307.30246 * 12 11 10 24 24 H 0.97003 * 119.99540 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46915 * 60.00886 * 9 7 2 26 26 H 1.08995 * 109.47176 * 300.00603 * 9 7 2 27 27 H 1.08998 * 109.47011 * 60.00639 * 10 9 7 28 28 H 1.08995 * 109.47468 * 300.00329 * 10 9 7 29 29 H 1.09003 * 109.46940 * 64.00088 * 11 10 9 30 30 H 1.09001 * 109.46976 * 304.00840 * 11 10 9 31 31 H 1.08996 * 108.29280 * 53.68454 * 13 12 11 32 32 H 1.09007 * 108.14363 * 296.66463 * 13 12 11 33 33 H 1.08993 * 108.96014 * 329.56230 * 14 13 12 34 34 H 1.09000 * 108.89419 * 210.84748 * 14 13 12 35 35 H 1.08994 * 109.79562 * 358.36751 * 17 15 14 36 36 H 1.09004 * 109.78446 * 237.54319 * 17 15 14 37 37 H 1.00902 * 110.99956 * 218.07847 * 18 17 15 38 38 H 1.08998 * 110.22381 * 149.14815 * 19 18 17 39 39 H 1.09009 * 110.21654 * 271.07950 * 19 18 17 40 40 H 1.08995 * 109.17051 * 59.17907 * 22 20 19 41 41 H 1.09007 * 109.12628 * 299.94359 * 22 20 19 42 42 H 1.08999 * 110.10082 * 314.27587 * 23 12 11 43 43 H 1.08996 * 110.10595 * 75.83049 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4319 -6.1020 0.0955 13 6 3.0864 -6.1106 1.3741 14 6 4.0032 -7.2801 1.6238 15 6 5.4282 -6.9944 1.1776 16 1 5.7052 -5.9606 1.3833 17 6 6.3833 -7.9764 1.8775 18 7 7.0400 -8.7853 0.8376 19 6 6.2105 -8.7080 -0.3807 20 6 5.5318 -7.3308 -0.3322 21 1 6.1632 -6.5939 -0.8288 22 6 4.1785 -7.3707 -1.0155 23 6 3.4919 -5.9967 -0.9596 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 2.8718 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8904 29 1 0.9088 -5.0762 -0.9251 30 1 0.8006 -5.0146 0.8505 31 1 2.3211 -6.1042 2.1502 32 1 3.6692 -5.1938 1.4634 33 1 3.6285 -8.1465 1.0788 34 1 4.0046 -7.5062 2.6900 35 1 5.8196 -8.6247 2.5483 36 1 7.1331 -7.4224 2.4424 37 1 7.1506 -9.7417 1.1396 38 1 6.8372 -8.7881 -1.2689 39 1 5.4596 -9.4983 -0.3760 40 1 3.5475 -8.1066 -0.5171 41 1 4.3129 -7.6616 -2.0574 42 1 3.0391 -5.7647 -1.9236 43 1 4.2138 -5.2259 -0.6900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309592423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:26 Heat of formation + Delta-G solvation = -7.616396 kcal Electronic energy + Delta-G solvation = -19329.240352 eV Core-core repulsion = 16601.295777 eV Total energy + Delta-G solvation = -2727.944576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33691 -37.59409 -34.09883 -32.72575 -32.38706 -30.71544 -28.29122 -27.43923 -25.27114 -23.25276 -22.91782 -21.61542 -21.17503 -19.53344 -18.79859 -16.72929 -16.37626 -15.91545 -15.34425 -15.10072 -14.53376 -14.25552 -13.81989 -13.61636 -13.17221 -12.99480 -12.81637 -12.31583 -12.20302 -12.16880 -11.70522 -11.51442 -11.48450 -10.97938 -10.91239 -10.80568 -10.62840 -10.57096 -10.39790 -10.22884 -10.18059 -9.61398 -9.45478 -9.19066 -8.64586 -8.35049 -7.92727 -6.00019 -4.02773 3.32493 3.36859 3.39410 4.04343 4.21996 4.43455 4.45533 4.53290 4.76414 4.93786 5.09388 5.23572 5.29096 5.35290 5.37720 5.47444 5.51986 5.59951 5.62635 5.66861 5.75876 5.89490 5.93696 5.98061 6.00718 6.06432 6.13926 6.21905 6.25303 6.33362 6.47650 6.60960 6.66713 6.79492 7.04768 7.11470 7.31619 7.49347 7.65954 7.81030 7.99365 8.42694 9.03932 9.61331 11.11035 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033483 B = 0.004174 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.053641 B = 6707.245985 C = 6994.430748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.143 4.143 11 C 0.048 3.952 12 N -0.523 5.523 13 C 0.047 3.953 14 C -0.114 4.114 15 C -0.095 4.095 16 H 0.083 0.917 17 C 0.050 3.950 18 N -0.682 5.682 19 C 0.050 3.950 20 C -0.091 4.091 21 H 0.073 0.927 22 C -0.113 4.113 23 C 0.044 3.956 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.337 0.663 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -18.242 1.251 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.182 4.182 11 C -0.079 4.079 12 N -0.246 5.246 13 C -0.083 4.083 14 C -0.152 4.152 15 C -0.114 4.114 16 H 0.102 0.898 17 C -0.080 4.080 18 N -0.311 5.311 19 C -0.079 4.079 20 C -0.110 4.110 21 H 0.091 0.909 22 C -0.151 4.151 23 C -0.083 4.083 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.977 -18.104 1.012 20.696 hybrid contribution 0.129 1.295 0.416 1.366 sum 10.106 -16.809 1.427 19.665 Atomic orbital electron populations 1.69954 1.06039 1.26689 1.50817 1.25019 0.94841 0.99205 0.95327 0.86677 0.79616 0.83213 0.78611 1.20246 1.21229 1.20277 1.21217 0.92881 0.91207 1.50648 0.92978 1.19020 0.93869 0.91261 0.97142 1.22225 0.99937 0.95814 1.00242 1.22391 0.94671 0.88533 1.02321 1.63408 1.14856 1.43404 1.02911 1.21066 0.97207 0.97362 0.92629 1.21268 0.93657 0.99564 1.00691 1.22063 0.94923 0.99766 0.94606 0.89826 1.22592 0.95990 0.95473 0.93906 1.61999 1.48845 1.15485 1.04749 1.22597 0.94812 0.96685 0.93810 1.21816 0.96925 0.96745 0.95536 0.90857 1.21661 0.94815 0.98587 1.00020 1.22943 0.93481 0.95894 0.96001 0.92945 0.96592 0.96700 0.93428 0.93254 0.90917 0.91220 0.91734 0.94784 0.90575 0.92000 0.93893 0.90783 0.84734 0.90496 0.94225 0.90075 0.92028 0.90807 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.51 16 10 C -0.14 -2.96 4.31 -26.73 -0.12 -3.07 16 11 C 0.05 0.84 5.41 -3.82 -0.02 0.82 16 12 N -0.52 -7.75 4.84 -235.67 -1.14 -8.89 16 13 C 0.05 0.64 4.44 -6.72 -0.03 0.61 16 14 C -0.11 -1.27 4.51 -28.38 -0.13 -1.40 16 15 C -0.09 -1.03 3.12 -89.61 -0.28 -1.31 16 16 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 17 C 0.05 0.48 7.11 -3.23 -0.02 0.45 16 18 N -0.68 -6.49 7.42 -112.20 -0.83 -7.32 16 19 C 0.05 0.47 7.03 -3.13 -0.02 0.45 16 20 C -0.09 -0.97 2.61 -89.91 -0.23 -1.21 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.11 -1.25 4.64 -27.04 -0.13 -1.38 16 23 C 0.04 0.61 4.26 -1.76 -0.01 0.60 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.99 6.45 -51.93 -0.33 0.66 16 28 H 0.05 1.02 6.91 -51.93 -0.36 0.66 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.22 7.97 -51.93 -0.41 0.81 16 31 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.03 0.52 5.60 -51.93 -0.29 0.23 16 33 H 0.08 0.86 5.67 -51.93 -0.29 0.57 16 34 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 35 H 0.04 0.37 7.38 -51.93 -0.38 -0.01 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.34 2.59 8.91 -39.29 -0.35 2.24 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.35 7.93 -51.92 -0.41 -0.06 16 40 H 0.08 0.94 5.56 -51.93 -0.29 0.65 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 43 H 0.05 0.73 6.65 -51.93 -0.35 0.39 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -29.91 316.88 -10.62 -40.53 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.60 Total: -0.85 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -1.54 Total: -18.65 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -1.24 Total: -42.67 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.91 -10.62 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309592423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.911 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds