Wall clock time and date at job start Mon Mar 30 2020 03:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47499 * 240.00169 * 3 2 1 5 5 H 1.48508 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 119.99807 * 3 2 1 7 7 C 1.37872 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47244 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47182 * 184.00463 * 11 10 9 13 13 C 1.43634 * 110.99909 * 67.10798 * 12 11 10 14 14 C 1.50686 * 115.42764 * 175.22993 * 13 12 11 15 15 C 1.52033 * 112.07477 * 90.22565 * 14 13 12 16 16 H 1.08993 * 111.16457 * 37.45899 * 15 14 13 17 17 C 1.53827 * 109.17437 * 160.51182 * 15 14 13 18 18 N 1.47206 * 107.84017 * 117.96105 * 17 15 14 19 19 C 1.47589 * 107.67367 * 339.75957 * 18 17 15 20 20 C 1.53615 * 105.61559 * 30.10955 * 19 18 17 21 21 H 1.09006 * 109.62067 * 89.72046 * 20 19 18 22 22 C 1.51662 * 110.87716 * 210.40194 * 20 19 18 23 23 C 1.49931 * 111.00148 * 307.30246 * 12 11 10 24 24 H 0.97003 * 119.99540 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46915 * 60.00886 * 9 7 2 26 26 H 1.08995 * 109.47176 * 300.00603 * 9 7 2 27 27 H 1.08998 * 109.47011 * 60.00639 * 10 9 7 28 28 H 1.08995 * 109.47468 * 300.00329 * 10 9 7 29 29 H 1.09003 * 109.46940 * 64.00088 * 11 10 9 30 30 H 1.09001 * 109.46976 * 304.00840 * 11 10 9 31 31 H 1.08996 * 108.29280 * 53.68454 * 13 12 11 32 32 H 1.09007 * 108.14363 * 296.66463 * 13 12 11 33 33 H 1.08993 * 108.96014 * 329.56230 * 14 13 12 34 34 H 1.09000 * 108.89419 * 210.84748 * 14 13 12 35 35 H 1.08994 * 109.79562 * 358.36751 * 17 15 14 36 36 H 1.09004 * 109.78446 * 237.54319 * 17 15 14 37 37 H 1.00902 * 110.99956 * 218.07847 * 18 17 15 38 38 H 1.08998 * 110.22381 * 149.14815 * 19 18 17 39 39 H 1.09009 * 110.21654 * 271.07950 * 19 18 17 40 40 H 1.08995 * 109.17051 * 59.17907 * 22 20 19 41 41 H 1.09007 * 109.12628 * 299.94359 * 22 20 19 42 42 H 1.08999 * 110.10082 * 314.27587 * 23 12 11 43 43 H 1.08996 * 110.10595 * 75.83049 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4319 -6.1020 0.0955 13 6 3.0864 -6.1106 1.3741 14 6 4.0032 -7.2801 1.6238 15 6 5.4282 -6.9944 1.1776 16 1 5.7052 -5.9606 1.3833 17 6 6.3833 -7.9764 1.8775 18 7 7.0400 -8.7853 0.8376 19 6 6.2105 -8.7080 -0.3807 20 6 5.5318 -7.3308 -0.3322 21 1 6.1632 -6.5939 -0.8288 22 6 4.1785 -7.3707 -1.0155 23 6 3.4919 -5.9967 -0.9596 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 2.8718 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8904 29 1 0.9088 -5.0762 -0.9251 30 1 0.8006 -5.0146 0.8505 31 1 2.3211 -6.1042 2.1502 32 1 3.6692 -5.1938 1.4634 33 1 3.6285 -8.1465 1.0788 34 1 4.0046 -7.5062 2.6900 35 1 5.8196 -8.6247 2.5483 36 1 7.1331 -7.4224 2.4424 37 1 7.1506 -9.7417 1.1396 38 1 6.8372 -8.7881 -1.2689 39 1 5.4596 -9.4983 -0.3760 40 1 3.5475 -8.1066 -0.5171 41 1 4.3129 -7.6616 -2.0574 42 1 3.0391 -5.7647 -1.9236 43 1 4.2138 -5.2259 -0.6900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309592423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:25 Heat of formation + Delta-G solvation = -27.893664 kcal Electronic energy + Delta-G solvation = -19330.119641 eV Core-core repulsion = 16601.295777 eV Total energy + Delta-G solvation = -2728.823864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30401 -38.72178 -35.84391 -34.26862 -33.34264 -32.34722 -29.18726 -28.89820 -26.86552 -24.43991 -24.21814 -22.96528 -22.27553 -20.95281 -19.68558 -18.55699 -17.49840 -16.90905 -16.69314 -16.46113 -16.19947 -15.55350 -15.09979 -14.76507 -14.42736 -14.16306 -13.94387 -13.77768 -13.42890 -13.28568 -13.03961 -12.91463 -12.69643 -12.63546 -12.48174 -12.43426 -11.97581 -11.78810 -11.50208 -11.44278 -11.35580 -11.31214 -11.18787 -10.99669 -10.58162 -9.35959 -9.27271 -8.22785 -6.35149 1.36591 1.39481 1.47688 2.37701 2.99084 3.09270 3.36704 3.60219 3.66375 3.86507 3.98528 4.09727 4.22468 4.27218 4.30287 4.39760 4.52985 4.57647 4.61929 4.65717 4.71701 4.78075 4.84012 4.89414 4.94424 4.98228 5.07476 5.11795 5.12831 5.15797 5.23521 5.29990 5.34543 5.45913 5.57036 5.67374 5.80528 5.92017 6.06300 6.18665 6.24415 6.50331 6.80936 7.34247 8.88093 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033483 B = 0.004174 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.053641 B = 6707.245985 C = 6994.430748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.125 4.125 11 C 0.058 3.942 12 N -0.516 5.516 13 C 0.047 3.953 14 C -0.104 4.104 15 C -0.096 4.096 16 H 0.066 0.934 17 C 0.053 3.947 18 N -0.691 5.691 19 C 0.055 3.945 20 C -0.091 4.091 21 H 0.061 0.939 22 C -0.102 4.102 23 C 0.042 3.958 24 H 0.265 0.735 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.015 0.985 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.349 0.651 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 -19.312 1.291 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.164 4.164 11 C -0.070 4.070 12 N -0.238 5.238 13 C -0.083 4.083 14 C -0.141 4.141 15 C -0.115 4.115 16 H 0.085 0.915 17 C -0.076 4.076 18 N -0.321 5.321 19 C -0.074 4.074 20 C -0.110 4.110 21 H 0.080 0.920 22 C -0.140 4.140 23 C -0.085 4.085 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.009 0.991 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.166 0.834 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.374 -19.200 1.054 22.341 hybrid contribution -0.317 1.630 0.404 1.709 sum 11.056 -17.570 1.458 20.811 Atomic orbital electron populations 1.70083 1.07742 1.27911 1.51426 1.25964 0.95782 1.03289 0.94597 0.85532 0.78359 0.78205 0.79154 1.19186 1.20502 1.19289 1.21645 0.93268 0.92641 1.50940 0.92780 1.18922 0.94277 0.92902 0.94829 1.21993 0.98735 0.95664 0.99963 1.22207 0.94884 0.87626 1.02287 1.63473 1.15156 1.41334 1.03865 1.21151 0.97276 0.97901 0.91941 1.21183 0.93033 0.98200 1.01730 1.22027 0.95088 0.99325 0.95096 0.91517 1.22529 0.95719 0.95353 0.93965 1.61973 1.48936 1.16428 1.04763 1.22551 0.95028 0.95832 0.93997 1.21790 0.96542 0.97530 0.95157 0.92016 1.21555 0.94691 0.96585 1.01139 1.23008 0.92876 0.97348 0.95294 0.92654 0.98814 0.99063 0.93802 0.93299 0.90800 0.91506 0.92029 0.96729 0.90004 0.90547 0.92515 0.91042 0.83375 0.90025 0.93089 0.89865 0.90514 0.91097 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.12 -5.26 4.31 30.60 0.13 -5.13 16 11 C 0.06 2.03 5.41 86.30 0.47 2.50 16 12 N -0.52 -14.99 4.84 -899.53 -4.36 -19.34 16 13 C 0.05 1.26 4.44 86.16 0.38 1.64 16 14 C -0.10 -2.14 4.51 29.52 0.13 -2.00 16 15 C -0.10 -1.96 3.12 -10.14 -0.03 -1.99 16 16 H 0.07 1.59 7.72 -2.39 -0.02 1.57 16 17 C 0.05 0.91 7.11 86.52 0.62 1.53 16 18 N -0.69 -11.47 7.42 -508.88 -3.77 -15.24 16 19 C 0.05 0.89 7.03 86.38 0.61 1.50 16 20 C -0.09 -1.79 2.61 -10.33 -0.03 -1.82 16 21 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 22 C -0.10 -2.07 4.64 30.39 0.14 -1.93 16 23 C 0.04 1.13 4.26 85.95 0.37 1.49 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.04 1.87 6.45 -2.39 -0.02 1.85 16 28 H 0.05 2.05 6.91 -2.39 -0.02 2.03 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.07 2.37 7.97 -2.39 -0.02 2.35 16 31 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16 32 H 0.01 0.45 5.60 -2.38 -0.01 0.44 16 33 H 0.08 1.63 5.67 -2.39 -0.01 1.62 16 34 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 35 H 0.06 0.82 7.38 -2.39 -0.02 0.80 16 36 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.35 4.39 8.91 -89.69 -0.80 3.59 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 0.73 7.93 -2.38 -0.02 0.71 16 40 H 0.08 1.71 5.56 -2.39 -0.01 1.69 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 43 H 0.03 1.02 6.65 -2.39 -0.02 1.01 16 Total: -1.00 -64.09 316.88 -2.01 -66.10 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.17 Total: 12.45 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 3.63 Total: -33.73 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -7.84 Total: -91.76 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.09 -2.01 -66.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309592423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.206 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds