Wall clock time and date at job start Mon Mar 30 2020 03:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48505 * 109.47169 * 270.00133 * 3 2 1 5 5 H 1.48504 * 109.46990 * 29.99991 * 3 2 1 6 6 H 1.48498 * 109.47223 * 149.99948 * 3 2 1 7 7 C 1.37873 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47335 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47075 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47082 * 179.97438 * 11 10 9 13 13 C 1.47958 * 111.00502 * 190.00217 * 12 11 10 14 14 C 1.52961 * 109.38987 * 178.97199 * 13 12 11 15 15 C 1.52119 * 109.20232 * 330.25133 * 14 13 12 16 16 H 1.08998 * 111.29706 * 333.28518 * 15 14 13 17 17 C 1.54450 * 111.24012 * 208.37252 * 15 14 13 18 18 N 1.48296 * 104.25585 * 205.45287 * 17 15 14 19 19 C 1.47958 * 108.33109 * 24.80774 * 18 17 15 20 20 C 1.53788 * 106.74179 * 359.69754 * 19 18 17 21 21 H 1.09007 * 111.53052 * 94.95913 * 20 19 18 22 22 C 1.52499 * 111.43906 * 219.51619 * 20 19 18 23 23 C 1.48167 * 111.00271 * 67.31992 * 12 11 10 24 24 H 0.97005 * 120.00457 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47291 * 59.99392 * 9 7 2 26 26 H 1.09001 * 109.46678 * 299.99594 * 9 7 2 27 27 H 1.09003 * 109.46969 * 59.99653 * 10 9 7 28 28 H 1.09001 * 109.46943 * 299.99477 * 10 9 7 29 29 H 1.09003 * 109.47053 * 60.00259 * 11 10 9 30 30 H 1.08989 * 109.47337 * 300.00251 * 11 10 9 31 31 H 1.09001 * 109.48301 * 58.99744 * 13 12 11 32 32 H 1.09002 * 109.48471 * 298.95318 * 13 12 11 33 33 H 1.09001 * 109.51696 * 210.32881 * 14 13 12 34 34 H 1.09003 * 109.51296 * 90.16933 * 14 13 12 35 35 H 1.09003 * 110.47699 * 86.76524 * 17 15 14 36 36 H 1.08994 * 110.47944 * 324.15088 * 17 15 14 37 37 H 1.00901 * 110.99680 * 146.91706 * 18 17 15 38 38 H 1.08999 * 110.00544 * 119.02040 * 19 18 17 39 39 H 1.08997 * 110.00542 * 240.38494 * 19 18 17 40 40 H 1.08998 * 109.63028 * 50.51212 * 22 20 19 41 41 H 1.08998 * 109.63327 * 289.91522 * 22 20 19 42 42 H 1.09009 * 109.79920 * 350.33289 * 23 12 11 43 43 H 1.08999 * 109.80798 * 111.21125 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 7 6.0413 -4.0213 0.0004 13 6 7.5005 -4.0678 0.2402 14 6 7.9660 -5.5247 0.2588 15 6 6.8313 -6.4061 0.7585 16 1 6.1560 -5.8509 1.4094 17 6 7.3728 -7.6733 1.4560 18 7 6.2802 -8.6654 1.3104 19 6 5.4703 -8.2956 0.1286 20 6 6.0992 -7.0206 -0.4580 21 1 6.7998 -7.2527 -1.2602 22 6 5.0319 -6.0408 -0.9338 23 6 5.7154 -4.7003 -1.2756 24 1 -0.4851 0.8400 0.0004 25 1 3.8746 -0.6807 0.8904 26 1 3.8751 -0.6796 -0.8895 27 1 3.6586 -3.1501 -0.8903 28 1 3.6580 -3.1505 0.8897 29 1 5.9149 -2.1227 0.8899 30 1 5.9149 -2.1225 -0.8900 31 1 7.7263 -3.6017 1.1994 32 1 8.0171 -3.5311 -0.5555 33 1 8.8243 -5.6244 0.9232 34 1 8.2474 -5.8299 -0.7491 35 1 7.5690 -7.4743 2.5096 36 1 8.2765 -8.0256 0.9589 37 1 6.6501 -9.5996 1.2172 38 1 5.4979 -9.0981 -0.6084 39 1 4.4409 -8.0995 0.4286 40 1 4.2978 -5.8864 -0.1430 41 1 4.5399 -6.4378 -1.8217 42 1 5.0380 -4.0792 -1.8618 43 1 6.6296 -4.8850 -1.8397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309592424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:28 Heat of formation + Delta-G solvation = -26.259991 kcal Electronic energy + Delta-G solvation = -19330.436662 eV Core-core repulsion = 16601.683639 eV Total energy + Delta-G solvation = -2728.753023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91191 -38.27636 -35.84771 -34.16820 -33.51930 -32.41520 -29.15929 -28.87669 -26.76615 -24.31627 -23.87797 -22.22360 -21.64516 -21.20344 -20.52834 -18.88020 -17.35483 -16.80705 -16.39153 -16.20168 -15.92621 -15.49932 -15.13010 -14.79653 -14.48657 -14.37897 -14.05507 -13.77318 -13.54278 -13.17445 -13.05672 -13.01464 -12.79576 -12.33673 -12.23082 -11.90687 -11.79833 -11.66518 -11.55141 -11.45107 -11.40804 -11.34477 -11.15242 -10.97970 -10.75981 -9.34276 -9.13654 -8.29130 -6.33455 1.35171 1.37790 1.50061 2.36524 2.97964 3.06051 3.36153 3.66704 3.76983 3.95156 4.05132 4.23914 4.26514 4.28424 4.37385 4.46439 4.59411 4.60275 4.65570 4.69198 4.73594 4.80003 4.86705 4.90282 4.98178 4.99284 5.02371 5.08567 5.13358 5.16831 5.19542 5.35682 5.45822 5.54354 5.61532 5.67154 5.70475 5.94337 6.18076 6.24245 6.31818 6.55592 6.74833 7.31081 8.88081 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.004368 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.129988 B = 6408.029069 C = 6832.810241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.084 4.084 11 C 0.062 3.938 12 N -0.537 5.537 13 C 0.048 3.952 14 C -0.101 4.101 15 C -0.080 4.080 16 H 0.078 0.922 17 C 0.048 3.952 18 N -0.700 5.700 19 C 0.051 3.949 20 C -0.098 4.098 21 H 0.084 0.916 22 C -0.097 4.097 23 C 0.047 3.953 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.345 0.655 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.918 -14.338 -1.584 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.045 0.955 9 C -0.047 4.047 10 C -0.122 4.122 11 C -0.065 4.065 12 N -0.262 5.262 13 C -0.080 4.080 14 C -0.139 4.139 15 C -0.100 4.100 16 H 0.096 0.904 17 C -0.080 4.080 18 N -0.330 5.330 19 C -0.078 4.078 20 C -0.117 4.117 21 H 0.103 0.897 22 C -0.136 4.136 23 C -0.080 4.080 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.109 -14.210 -0.697 24.633 hybrid contribution 0.305 0.976 -1.321 1.671 sum 20.414 -13.235 -2.018 24.412 Atomic orbital electron populations 1.70082 1.08398 1.28177 1.52787 1.26071 0.95649 1.03684 0.94063 0.85598 0.79493 0.77937 0.79239 1.19055 1.20920 1.16897 1.21504 0.92287 0.92972 1.50307 0.95460 1.19494 0.93767 0.95115 0.96366 1.21254 0.94082 0.96515 1.00367 1.22100 0.94864 0.89115 1.00471 1.63277 1.14180 1.15172 1.33530 1.22476 0.86772 0.97663 1.01062 1.21491 0.97632 0.93102 1.01699 1.21954 0.97066 0.94682 0.96265 0.90357 1.22960 0.92663 0.91745 1.00653 1.62089 1.23531 1.06288 1.41070 1.22596 0.97751 0.96558 0.90914 1.22305 0.97511 0.94446 0.97477 0.89741 1.21654 0.97277 0.94036 1.00605 1.22725 0.99661 0.95480 0.90179 0.92502 0.96217 0.96415 0.93734 0.93840 0.90911 0.94904 0.90772 0.94333 0.89818 0.91363 0.90949 0.92556 0.83904 0.91770 0.92413 0.93105 0.91505 0.93014 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 7 C -0.53 -31.88 9.66 25.60 0.25 -31.63 16 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.08 -3.43 5.14 30.59 0.16 -3.27 16 11 C 0.06 1.97 4.79 86.30 0.41 2.39 16 12 N -0.54 -14.37 3.26 -887.31 -2.89 -17.26 16 13 C 0.05 0.99 5.25 86.09 0.45 1.44 16 14 C -0.10 -1.68 5.05 30.29 0.15 -1.52 16 15 C -0.08 -1.62 2.27 -10.01 -0.02 -1.64 16 16 H 0.08 2.12 7.06 -2.39 -0.02 2.11 16 17 C 0.05 0.85 6.91 86.53 0.60 1.44 16 18 N -0.70 -13.47 7.43 -503.92 -3.75 -17.21 16 19 C 0.05 1.00 7.20 86.37 0.62 1.62 16 20 C -0.10 -1.91 2.51 -10.11 -0.03 -1.94 16 21 H 0.08 1.41 7.54 -2.38 -0.02 1.40 16 22 C -0.10 -2.32 5.22 30.87 0.16 -2.16 16 23 C 0.05 1.18 5.02 86.50 0.43 1.61 16 24 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 25 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 26 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 27 H 0.04 1.85 6.66 -2.39 -0.02 1.84 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 30 H 0.03 1.00 8.11 -2.39 -0.02 0.98 16 31 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.12 7.92 -2.39 -0.02 1.11 16 34 H 0.07 1.02 6.84 -2.39 -0.02 1.00 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 0.78 8.03 -2.39 -0.02 0.76 16 37 H 0.34 5.12 8.92 -89.69 -0.80 4.32 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.36 7.76 -2.39 -0.02 1.34 16 40 H 0.05 1.51 8.02 -2.39 -0.02 1.49 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.47 6.32 -2.38 -0.02 1.46 16 43 H 0.07 1.38 6.74 -2.39 -0.02 1.37 16 Total: -1.00 -67.36 319.29 -0.57 -67.93 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.11 Total: 14.11 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 3.77 Total: -33.44 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -6.34 Total: -95.54 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -67.36 -0.57 -67.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309592424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.670 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds