Wall clock time and date at job start Mon Mar 30 2020 03:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 112.85133 * 2 1 4 4 N 1.46908 * 109.46840 * 48.79869 * 3 2 1 5 5 C 1.46904 * 110.99976 * 180.02562 * 4 3 2 6 6 C 1.53035 * 109.44720 * 84.96566 * 5 4 3 7 7 C 1.53191 * 109.31236 * 181.38097 * 6 5 4 8 8 N 1.46929 * 108.77545 * 305.36669 * 7 6 5 9 9 C 1.36943 * 120.63294 * 233.58836 * 8 7 6 10 10 H 1.08000 * 119.99404 * 27.69321 * 9 8 7 11 11 C 1.38804 * 119.99837 * 207.69657 * 9 8 7 12 12 N 1.31618 * 120.00488 * 17.35070 * 11 9 8 13 13 Si 1.86806 * 119.99788 * 197.35548 * 11 9 8 14 14 H 1.48501 * 109.47162 * 89.99802 * 13 11 9 15 15 H 1.48496 * 109.47079 * 209.99949 * 13 11 9 16 16 H 1.48495 * 109.47122 * 330.00094 * 13 11 9 17 17 C 1.46924 * 118.73625 * 53.60723 * 8 7 6 18 18 C 1.53035 * 109.46024 * 205.03293 * 5 4 3 19 19 C 1.53777 * 113.69053 * 131.26553 * 2 1 3 20 20 C 1.53777 * 87.08133 * 89.13107 * 19 2 1 21 21 C 1.53779 * 113.61644 * 228.80388 * 2 1 3 22 22 H 1.09004 * 109.47340 * 69.67308 * 1 2 3 23 23 H 1.08997 * 109.47118 * 189.66700 * 1 2 3 24 24 H 1.09001 * 109.47467 * 309.66748 * 1 2 3 25 25 H 1.09007 * 109.47012 * 288.80687 * 3 2 1 26 26 H 1.08995 * 109.47760 * 168.80019 * 3 2 1 27 27 H 1.00896 * 110.99781 * 56.05224 * 4 3 2 28 28 H 1.09002 * 109.45959 * 325.00419 * 5 4 3 29 29 H 1.09003 * 109.50176 * 301.33002 * 6 5 4 30 30 H 1.08996 * 109.49935 * 61.43191 * 6 5 4 31 31 H 1.09005 * 109.58899 * 185.58064 * 7 6 5 32 32 H 1.08998 * 109.70874 * 65.22313 * 7 6 5 33 33 H 0.97003 * 120.00197 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.58430 * 186.60579 * 17 8 7 35 35 H 1.08998 * 109.70564 * 66.25188 * 17 8 7 36 36 H 1.09005 * 109.49484 * 298.57829 * 18 5 4 37 37 H 1.08993 * 109.50166 * 58.63982 * 18 5 4 38 38 H 1.09010 * 113.61594 * 203.67743 * 19 2 1 39 39 H 1.09000 * 113.61444 * 334.57984 * 19 2 1 40 40 H 1.08997 * 113.61702 * 270.88218 * 20 19 2 41 41 H 1.09004 * 113.61487 * 139.98133 * 20 19 2 42 42 H 1.08992 * 113.61493 * 25.34826 * 21 2 1 43 43 H 1.09003 * 113.61320 * 156.25405 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 7 1.4735 2.2155 1.0421 5 6 2.0195 3.5789 1.0713 6 6 1.2900 4.4421 0.0394 7 6 1.8850 5.8537 0.0482 8 7 1.8342 6.3798 1.4191 9 6 1.2462 7.5884 1.6814 10 1 0.4556 7.9540 1.0429 11 6 1.6663 8.3434 2.7678 12 7 2.8253 8.0890 3.3373 13 14 0.5866 9.7205 3.4215 14 1 -0.3245 9.1829 4.4637 15 1 1.4413 10.7821 4.0111 16 1 -0.2152 10.2912 2.3096 17 6 2.4268 5.5846 2.5032 18 6 1.8258 4.1760 2.4670 19 6 2.1478 -0.9288 1.0585 20 6 2.0950 -2.0419 -0.0012 21 6 2.1460 -0.9280 -1.0602 22 1 -0.3634 0.3570 -0.9637 23 1 -0.3633 -1.0130 0.1726 24 1 -0.3634 0.6560 0.7910 25 1 1.9599 1.8734 -0.9729 26 1 3.1941 1.3534 0.1996 27 1 1.5561 1.7732 1.9452 28 1 3.0828 3.5494 0.8333 29 1 1.4089 4.0034 -0.9513 30 1 0.2306 4.4923 0.2908 31 1 1.3054 6.4987 -0.6124 32 1 2.9201 5.8184 -0.2915 33 1 3.1190 8.6169 4.0963 34 1 2.2047 6.0520 3.4626 35 1 3.5066 5.5248 2.3672 36 1 0.7612 4.2287 2.6955 37 1 2.3254 3.5476 3.2041 38 1 3.1609 -0.6486 1.3473 39 1 1.4972 -1.1093 1.9142 40 1 1.1595 -2.6013 -0.0006 41 1 2.9744 -2.6859 -0.0022 42 1 1.4940 -1.1079 -1.9149 43 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309757718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:58 Heat of formation + Delta-G solvation = 27.635893 kcal Electronic energy + Delta-G solvation = -19302.624440 eV Core-core repulsion = 16576.208519 eV Total energy + Delta-G solvation = -2726.415922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73837 -37.76641 -34.79841 -32.15126 -30.37259 -29.61268 -28.57745 -26.13537 -25.72798 -24.26314 -22.43030 -21.78294 -20.99246 -19.04983 -18.20541 -16.74478 -15.79722 -15.20841 -14.89702 -14.80911 -14.37771 -13.83872 -13.52192 -13.43585 -13.08372 -12.74191 -12.55401 -12.29396 -12.07485 -11.92161 -11.79430 -11.32923 -11.19187 -11.02723 -10.71260 -10.69460 -10.58238 -10.27960 -10.24480 -10.09127 -10.01854 -9.84802 -9.52639 -9.35965 -8.42921 -8.05810 -6.63258 -5.74954 -3.16485 3.40915 3.47607 3.48942 4.28420 4.49975 4.53595 4.57325 4.72621 4.82815 5.19333 5.39015 5.44334 5.48330 5.52367 5.58155 5.60917 5.70553 5.76086 5.78576 5.81081 5.85215 5.94270 6.01111 6.05346 6.19838 6.22416 6.34003 6.40164 6.51030 6.57067 6.62954 6.69499 6.72703 6.88296 7.10244 7.41827 7.45842 7.69384 7.73986 7.84072 8.49411 9.25743 9.89615 10.46563 11.33719 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051243 B = 0.004099 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.285602 B = 6828.587023 C = 6917.434895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C 0.075 3.925 4 N -0.684 5.684 5 C 0.096 3.904 6 C -0.115 4.115 7 C 0.144 3.856 8 N -0.592 5.592 9 C -0.250 4.250 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.905 5.905 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.174 3.826 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.134 4.134 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.334 0.666 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.253 0.747 34 H 0.088 0.912 35 H 0.015 0.985 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -17.611 -5.621 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.054 4.054 4 N -0.315 5.315 5 C -0.013 4.013 6 C -0.155 4.155 7 C 0.017 3.983 8 N -0.315 5.315 9 C -0.379 4.379 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.550 5.550 13 Si 0.732 3.268 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.204 1.204 17 C 0.047 3.953 18 C -0.180 4.180 19 C -0.174 4.174 20 C -0.178 4.178 21 C -0.172 4.172 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.152 0.848 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.814 -17.322 -5.893 18.387 hybrid contribution 0.508 0.516 0.771 1.058 sum -1.306 -16.807 -5.122 17.618 Atomic orbital electron populations 1.21446 0.92485 1.00848 1.02768 1.21865 0.96406 0.93290 0.96379 1.21913 0.94721 0.92118 0.96691 1.60603 1.59573 1.02779 1.08505 1.21458 0.95627 0.87046 0.97162 1.21978 1.00578 0.96330 0.96602 1.20929 0.96869 0.92255 0.88215 1.44057 1.67743 1.19121 1.00543 1.19227 1.11975 0.95006 1.11725 0.91652 1.25027 0.95821 0.97903 1.01019 1.70038 1.18119 1.42072 1.24724 0.86284 0.79885 0.81538 0.79049 1.21466 1.21832 1.20440 1.20732 0.93729 0.86491 0.94339 1.22386 1.01879 0.99782 0.93926 1.23041 1.00878 0.96525 0.96948 1.22781 1.01637 0.96321 0.97042 1.22996 1.00997 0.96388 0.96799 0.92819 0.93619 0.90676 0.91257 0.95743 0.84819 0.94922 0.93682 0.91828 0.92819 0.96867 0.93711 0.89358 0.96705 0.91896 0.93772 0.90503 0.91491 0.90353 0.91893 0.91571 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.92 37.15 0.33 -0.93 16 2 C -0.08 -0.83 1.10 -153.70 -0.17 -1.00 16 3 C 0.08 0.95 4.96 -3.82 -0.02 0.93 16 4 N -0.68 -9.90 5.21 -106.67 -0.56 -10.45 16 5 C 0.10 1.68 2.46 -67.67 -0.17 1.51 16 6 C -0.12 -2.13 5.59 -26.61 -0.15 -2.28 16 7 C 0.14 3.14 6.52 -3.71 -0.02 3.12 16 8 N -0.59 -15.21 3.00 -172.32 -0.52 -15.73 16 9 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 10 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 11 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 12 N -0.90 -26.60 11.19 55.49 0.62 -25.98 16 13 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 C 0.17 4.22 5.31 -3.71 -0.02 4.20 16 18 C -0.14 -2.73 5.36 -26.61 -0.14 -2.87 16 19 C -0.14 -1.32 7.21 -25.92 -0.19 -1.51 16 20 C -0.14 -1.21 7.73 -25.92 -0.20 -1.41 16 21 C -0.13 -1.25 7.23 -25.92 -0.19 -1.43 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.43 7.34 -51.93 -0.38 0.05 16 24 H 0.07 0.91 7.27 -51.93 -0.38 0.53 16 25 H 0.07 0.93 7.41 -51.93 -0.38 0.55 16 26 H 0.02 0.32 7.86 -51.93 -0.41 -0.09 16 27 H 0.33 4.60 8.33 -39.29 -0.33 4.27 16 28 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 29 H 0.04 0.75 7.42 -51.93 -0.39 0.37 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.08 0.76 7.96 -51.92 -0.41 0.34 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.08 0.63 7.64 -51.93 -0.40 0.24 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -28.78 327.63 -9.68 -38.46 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.97 Total: 0.69 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.88 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.45 Total: -52.16 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.78 -9.68 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309757718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.096 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds