Wall clock time and date at job start Mon Mar 30 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47327 * 2 1 4 4 H 1.08996 * 109.47255 * 177.76715 * 3 2 1 5 5 C 1.50701 * 109.47140 * 57.76622 * 3 2 1 6 6 H 1.08006 * 119.99735 * 245.33095 * 5 3 2 7 7 C 1.37869 * 119.99992 * 65.60817 * 5 3 2 8 8 N 1.31518 * 120.00026 * 194.36281 * 7 5 3 9 9 Si 1.86799 * 120.00238 * 14.35828 * 7 5 3 10 10 H 1.48501 * 109.46853 * 85.40639 * 9 7 5 11 11 H 1.48498 * 109.47429 * 205.40723 * 9 7 5 12 12 H 1.48500 * 109.47257 * 325.40972 * 9 7 5 13 13 N 1.46906 * 109.46630 * 297.76677 * 3 2 1 14 14 C 1.46902 * 110.99925 * 275.94615 * 13 3 2 15 15 H 1.09004 * 110.28322 * 45.58782 * 14 13 3 16 16 C 1.54379 * 110.32832 * 283.45993 * 14 13 3 17 17 N 1.48556 * 104.59354 * 217.25404 * 16 14 13 18 18 C 1.46897 * 111.00154 * 159.03630 * 17 16 14 19 19 C 1.53002 * 117.49878 * 136.03167 * 18 17 16 20 20 C 1.53003 * 117.49664 * 67.37583 * 18 17 16 21 21 C 1.48554 * 104.22640 * 39.47751 * 17 16 14 22 22 C 1.54256 * 110.32120 * 167.81928 * 14 13 3 23 23 H 1.09003 * 110.32469 * 237.79339 * 22 14 13 24 24 C 1.52997 * 110.32528 * 359.97438 * 22 14 13 25 25 H 1.09002 * 109.46720 * 65.93373 * 1 2 3 26 26 H 1.08999 * 109.47169 * 185.93306 * 1 2 3 27 27 H 1.09000 * 109.47281 * 305.94029 * 1 2 3 28 28 H 1.08993 * 109.47657 * 239.99542 * 2 1 3 29 29 H 1.09010 * 109.47204 * 119.99377 * 2 1 3 30 30 H 0.97001 * 120.00447 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00146 * 39.90169 * 13 3 2 32 32 H 1.08999 * 110.40499 * 336.02667 * 16 14 13 33 33 H 1.08999 * 110.41392 * 98.46800 * 16 14 13 34 34 H 1.08999 * 115.55263 * 281.71298 * 18 17 16 35 35 H 1.08998 * 117.49937 * 0.02562 * 19 18 17 36 36 H 1.09004 * 117.49316 * 145.01983 * 19 18 17 37 37 H 1.09002 * 117.50129 * 214.97836 * 20 18 17 38 38 H 1.09004 * 117.49984 * 359.97438 * 20 18 17 39 39 H 1.09010 * 110.41065 * 79.29468 * 21 17 16 40 40 H 1.08996 * 110.41890 * 201.62327 * 21 17 16 41 41 H 1.09000 * 109.46629 * 53.66702 * 24 22 14 42 42 H 1.09007 * 109.47045 * 173.66173 * 24 22 14 43 43 H 1.08994 * 109.47782 * 293.66255 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0400 5 6 1.4930 2.1687 1.2018 6 1 0.8073 2.9925 1.0690 7 6 1.8724 1.7852 2.4706 8 7 1.1985 2.2129 3.5159 9 14 3.3434 0.6581 2.7051 10 1 4.5871 1.4686 2.7416 11 1 3.1991 -0.0850 3.9827 12 1 3.4134 -0.3055 1.5773 13 7 1.5949 2.1192 -1.2256 14 6 2.5078 1.8403 -2.3422 15 1 2.7479 0.7776 -2.3777 16 6 3.7977 2.6770 -2.2020 17 7 4.1483 3.0602 -3.5938 18 6 5.0302 4.2349 -3.6101 19 6 6.2294 4.2048 -4.5599 20 6 6.4441 4.0645 -3.0508 21 6 2.8407 3.3674 -4.2283 22 6 1.8783 2.2945 -3.6751 23 1 1.8095 1.4549 -4.3669 24 6 0.4934 2.8972 -3.4307 25 1 -0.3633 0.4191 -0.9384 26 1 -0.3633 -1.0221 0.1062 27 1 -0.3634 0.6032 0.8320 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4656 1.9434 4.4087 31 1 0.6483 1.8590 -1.4589 32 1 3.6107 3.5654 -1.5988 33 1 4.5937 2.0773 -1.7607 34 1 4.5382 5.1944 -3.4508 35 1 6.3637 3.3136 -5.1729 36 1 6.5265 5.1447 -5.0252 37 1 6.8825 4.9121 -2.5240 38 1 6.7198 3.0810 -2.6703 39 1 2.5040 4.3639 -3.9422 40 1 2.9167 3.2895 -5.3129 41 1 0.5676 3.6861 -2.6822 42 1 0.1093 3.3145 -4.3616 43 1 -0.1832 2.1206 -3.0743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310041245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:07 Heat of formation + Delta-G solvation = 37.747065 kcal Electronic energy + Delta-G solvation = -19813.131825 eV Core-core repulsion = 17087.154356 eV Total energy + Delta-G solvation = -2725.977469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.43788 -37.07655 -35.41022 -32.34151 -31.60749 -30.53317 -27.56198 -26.08637 -25.58519 -23.13107 -22.34181 -21.89361 -20.34775 -19.72744 -18.47274 -16.77165 -16.18008 -15.76482 -14.99857 -14.80393 -14.55572 -13.80180 -13.53457 -13.23970 -12.87689 -12.76955 -12.58569 -12.28540 -12.01802 -11.92352 -11.54188 -11.46041 -11.02608 -10.92877 -10.78917 -10.67399 -10.51219 -10.37655 -10.33730 -10.09746 -9.91441 -9.80053 -9.30790 -9.20410 -8.34428 -8.31671 -7.36723 -6.04785 -3.96165 3.29197 3.37263 3.40347 3.78294 3.99645 4.45138 4.83736 4.90084 4.96812 5.03440 5.08353 5.26263 5.32467 5.40030 5.61093 5.65649 5.69070 5.80956 5.83238 5.84631 5.97505 6.00304 6.07137 6.07970 6.17258 6.18428 6.24275 6.33173 6.39171 6.44312 6.63242 6.64335 6.83843 6.92404 7.06371 7.11411 7.25667 7.33215 7.77899 7.98603 8.40114 8.73017 9.08886 9.61958 11.08593 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.006938 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.999523 B = 4034.835930 C = 4852.973081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.188 3.812 4 H 0.027 0.973 5 C -0.492 4.492 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.255 1.255 13 N -0.667 5.667 14 C 0.083 3.917 15 H 0.040 0.960 16 C 0.049 3.951 17 N -0.489 5.489 18 C -0.002 4.002 19 C -0.165 4.165 20 C -0.171 4.171 21 C 0.047 3.953 22 C -0.094 4.094 23 H 0.071 0.929 24 C -0.140 4.140 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.337 0.663 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 0.895 -15.004 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.079 3.921 4 H 0.045 0.955 5 C -0.530 4.530 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.180 1.180 13 N -0.300 5.300 14 C -0.028 4.028 15 H 0.058 0.942 16 C -0.079 4.079 17 N -0.213 5.213 18 C -0.112 4.112 19 C -0.203 4.203 20 C -0.209 4.209 21 C -0.081 4.081 22 C -0.113 4.113 23 H 0.089 0.911 24 C -0.198 4.198 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.251 1.066 -14.910 15.843 hybrid contribution 0.296 -0.955 0.579 1.155 sum 5.547 0.111 -14.330 15.367 Atomic orbital electron populations 1.21638 0.96292 0.99620 1.01850 1.22581 0.96666 1.00980 0.99498 1.19576 0.95062 0.88489 0.89019 0.95500 1.20814 1.27560 1.16838 0.87831 0.90355 1.24843 0.96220 0.95737 0.96014 1.69951 1.38561 1.46400 0.98538 0.87381 0.84644 0.81785 0.77772 1.20597 1.21646 1.17956 1.60936 1.04679 1.62126 1.02296 1.22137 0.93122 0.96682 0.90873 0.94223 1.23074 0.96390 0.99716 0.88735 1.65180 1.11534 1.29737 1.14825 1.22578 0.89185 0.93672 1.05759 1.23002 1.01537 1.02851 0.92911 1.22990 0.98181 1.03303 0.96401 1.23076 0.88497 0.97633 0.98911 1.21964 0.95208 0.97665 0.96502 0.91099 1.21731 0.95110 1.01718 1.01269 0.94696 0.95156 0.90079 0.95596 0.92058 0.92836 0.84109 0.91814 0.91098 0.89485 0.88427 0.89105 0.88820 0.88417 0.93463 0.90858 0.90548 0.93492 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.37 37.16 0.35 -2.36 16 2 C -0.16 -3.36 5.23 -26.73 -0.14 -3.50 16 3 C 0.19 4.27 1.76 -68.86 -0.12 4.15 16 4 H 0.03 0.65 6.05 -51.93 -0.31 0.33 16 5 C -0.49 -13.31 7.80 -34.44 -0.27 -13.57 16 6 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 7 C 0.07 2.06 5.37 -17.82 -0.10 1.96 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 9 Si 0.86 21.01 25.95 -169.99 -4.41 16.60 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.25 -5.89 5.29 56.52 0.30 -5.59 16 13 N -0.67 -13.05 4.96 -99.50 -0.49 -13.54 16 14 C 0.08 1.42 3.22 -66.33 -0.21 1.20 16 15 H 0.04 0.71 7.16 -51.93 -0.37 0.34 16 16 C 0.05 0.82 5.22 -2.18 -0.01 0.81 16 17 N -0.49 -7.14 5.52 -222.03 -1.23 -8.37 16 18 C 0.00 -0.03 5.03 -67.71 -0.34 -0.37 16 19 C -0.17 -1.80 10.46 -26.69 -0.28 -2.08 16 20 C -0.17 -2.05 10.17 -26.69 -0.27 -2.32 16 21 C 0.05 0.63 6.04 -2.18 -0.01 0.61 16 22 C -0.09 -1.32 3.65 -89.24 -0.33 -1.65 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 24 C -0.14 -1.87 7.85 37.16 0.29 -1.58 16 25 H 0.03 0.61 6.60 -51.93 -0.34 0.27 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.84 6.94 -51.93 -0.36 1.48 16 28 H 0.03 0.50 7.28 -51.93 -0.38 0.12 16 29 H 0.06 1.39 4.68 -51.92 -0.24 1.15 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.34 6.30 4.20 -39.29 -0.16 6.14 16 32 H 0.06 1.21 7.91 -51.93 -0.41 0.80 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.13 7.91 -51.93 -0.41 0.72 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.64 7.56 -51.92 -0.39 0.25 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.16 7.54 -51.93 -0.39 0.77 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.73 7.08 -51.93 -0.37 0.36 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -28.29 321.63 -9.57 -37.86 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.61 Total: 7.39 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.44 Total: -18.70 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.95 Total: -48.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.41 Total: 16.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.29 -9.57 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.608 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds