Wall clock time and date at job start Mon Mar 30 2020 04:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46645 * 2 1 4 4 H 1.09000 * 109.46878 * 305.64878 * 3 2 1 5 5 C 1.50702 * 109.46827 * 185.65003 * 3 2 1 6 6 H 1.07997 * 119.99715 * 239.99220 * 5 3 2 7 7 C 1.37878 * 120.00191 * 60.00030 * 5 3 2 8 8 N 1.31517 * 119.99594 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00253 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46896 * 89.99670 * 9 7 5 11 11 H 1.48497 * 109.47332 * 209.99947 * 9 7 5 12 12 H 1.48501 * 109.46861 * 329.99994 * 9 7 5 13 13 N 1.46894 * 109.47326 * 65.65088 * 3 2 1 14 14 C 1.46901 * 111.00148 * 205.98189 * 13 3 2 15 15 H 1.09002 * 110.78038 * 327.56813 * 14 13 3 16 16 C 1.54935 * 110.72849 * 90.81780 * 14 13 3 17 17 N 1.48533 * 103.22753 * 155.77240 * 16 14 13 18 18 C 1.46901 * 110.99697 * 200.28089 * 17 16 14 19 19 C 1.53001 * 117.49851 * 246.01497 * 18 17 16 20 20 C 1.53005 * 117.49427 * 177.35905 * 18 17 16 21 21 C 1.47899 * 105.82145 * 320.79485 * 17 16 14 22 22 C 1.53998 * 107.05580 * 25.33053 * 21 17 16 23 23 H 1.09005 * 110.30555 * 239.85451 * 22 21 17 24 24 C 1.53000 * 110.30771 * 117.78950 * 22 21 17 25 25 H 1.08993 * 109.47386 * 54.40327 * 1 2 3 26 26 H 1.08999 * 109.47014 * 174.40332 * 1 2 3 27 27 H 1.09002 * 109.47181 * 294.40125 * 1 2 3 28 28 H 1.08997 * 109.47328 * 240.00123 * 2 1 3 29 29 H 1.08997 * 109.47495 * 119.99371 * 2 1 3 30 30 H 0.97003 * 119.99477 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99958 * 329.93137 * 13 3 2 32 32 H 1.09011 * 110.66497 * 37.33908 * 16 14 13 33 33 H 1.09004 * 110.66807 * 274.21299 * 16 14 13 34 34 H 1.08996 * 115.55564 * 31.69175 * 18 17 16 35 35 H 1.09006 * 117.49729 * 0.02562 * 19 18 17 36 36 H 1.08997 * 117.49844 * 145.02204 * 19 18 17 37 37 H 1.09000 * 117.49998 * 214.97611 * 20 18 17 38 38 H 1.08993 * 117.50054 * 0.02562 * 20 18 17 39 39 H 1.08998 * 109.91628 * 265.97875 * 21 17 16 40 40 H 1.09002 * 109.91443 * 144.68312 * 21 17 16 41 41 H 1.09010 * 109.47011 * 62.78809 * 24 22 21 42 42 H 1.08998 * 109.47222 * 182.78859 * 24 22 21 43 43 H 1.08996 * 109.47204 * 302.79010 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5404 1.4450 -0.1399 6 1 4.1539 1.8867 0.6313 7 6 4.1300 0.8833 -1.2525 8 7 3.3828 0.3450 -2.1915 9 14 5.9898 0.8868 -1.4263 10 1 6.5464 -0.3469 -0.8151 11 1 6.3525 0.9334 -2.8655 12 1 6.5491 2.0768 -0.7361 13 7 1.6647 2.0946 1.2617 14 6 1.5613 3.5501 1.0918 15 1 2.2744 3.9042 0.3473 16 6 0.1171 3.9557 0.7041 17 7 0.0281 5.3681 1.1551 18 6 -1.3721 5.7815 1.3176 19 6 -1.9053 6.8582 0.3703 20 6 -1.6352 7.1958 1.8386 21 6 0.7509 5.4261 2.4441 22 6 1.7736 4.2748 2.4407 23 1 1.5802 3.5946 3.2702 24 6 3.1970 4.8287 2.5301 25 1 -0.3634 0.5981 -0.8356 26 1 -0.3633 -1.0228 -0.1002 27 1 -0.3634 0.4246 0.9359 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7976 -0.0505 -2.9741 31 1 0.8052 1.7111 1.6253 32 1 -0.6104 3.3373 1.2300 33 1 -0.0256 3.8863 -0.3743 34 1 -2.0618 4.9955 1.6252 35 1 -1.2172 7.2595 -0.3738 36 1 -2.9458 6.7806 0.0549 37 1 -2.4981 7.3403 2.4887 38 1 -0.7693 7.8196 2.0604 39 1 0.0500 5.2978 3.2689 40 1 1.2675 6.3814 2.5374 41 1 3.3223 5.3580 3.4748 42 1 3.9108 4.0066 2.4768 43 1 3.3721 5.5161 1.7025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310041246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:10 Heat of formation + Delta-G solvation = 23.013825 kcal Electronic energy + Delta-G solvation = -19595.789659 eV Core-core repulsion = 16869.173310 eV Total energy + Delta-G solvation = -2726.616350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.31634 -36.80481 -35.21333 -32.14186 -31.57721 -30.72458 -27.47153 -25.99297 -25.10532 -22.81603 -22.33510 -21.48991 -20.49467 -19.65934 -19.05846 -16.41152 -16.19485 -15.48251 -15.06818 -14.49880 -14.10888 -13.67683 -13.37863 -13.29192 -12.82889 -12.68094 -12.42293 -12.12374 -11.85194 -11.58373 -11.54320 -11.48287 -11.12976 -10.90374 -10.61704 -10.55961 -10.55649 -10.42892 -10.19493 -9.97109 -9.92539 -9.66145 -9.45125 -9.05137 -8.31637 -8.24379 -7.19224 -5.93578 -3.97265 3.34957 3.41401 3.45439 3.75530 3.99968 4.47900 4.89151 4.92225 4.93322 5.06881 5.29196 5.33604 5.37474 5.57484 5.58169 5.63444 5.69793 5.81039 5.86316 5.95992 6.01664 6.14031 6.15189 6.15858 6.16775 6.31221 6.39333 6.48814 6.52364 6.67446 6.77877 6.84264 7.09578 7.10074 7.19994 7.27385 7.54983 7.79787 7.95748 8.33900 8.42278 8.77723 9.10757 9.67620 11.11833 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.005878 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.399064 B = 4762.644432 C = 5264.797175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.102 3.898 15 H 0.095 0.905 16 C 0.012 3.988 17 N -0.488 5.488 18 C -0.001 4.001 19 C -0.164 4.164 20 C -0.176 4.176 21 C 0.044 3.956 22 C -0.095 4.095 23 H 0.075 0.925 24 C -0.133 4.133 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.316 0.684 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 9.139 7.369 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.010 4.010 15 H 0.113 0.887 16 C -0.117 4.117 17 N -0.212 5.212 18 C -0.111 4.111 19 C -0.201 4.201 20 C -0.214 4.214 21 C -0.084 4.084 22 C -0.114 4.114 23 H 0.094 0.906 24 C -0.191 4.191 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.602 9.407 7.044 13.996 hybrid contribution -0.383 -0.549 -0.105 0.677 sum -7.985 8.858 6.938 13.797 Atomic orbital electron populations 1.21877 0.99690 0.99667 0.99418 1.21786 0.91143 1.00535 1.03067 1.19181 0.95470 0.89823 0.84312 0.97864 1.21209 0.91248 1.36293 1.04144 0.92062 1.24948 0.97984 0.95726 0.95875 1.69874 1.34606 1.39609 1.09611 0.86569 0.85957 0.78360 0.76929 1.20850 1.21482 1.19974 1.60755 1.36195 1.01143 1.32413 1.22478 0.93395 0.89627 0.95493 0.88670 1.24054 0.99266 0.87403 1.01010 1.64513 1.09227 1.21904 1.25515 1.22636 0.91366 0.91975 1.05113 1.23023 1.01242 1.02622 0.93261 1.23008 1.03043 0.97993 0.97354 1.22929 0.95745 0.99535 0.90197 1.22012 0.94884 0.95385 0.99141 0.90626 1.21712 0.96151 1.00926 1.00271 0.93880 0.94442 0.94805 0.88220 0.94120 0.93148 0.86595 0.94251 0.90315 0.89659 0.88170 0.89079 0.89068 0.88490 0.94278 0.90805 0.93825 0.91655 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.65 37.16 0.36 -2.50 16 2 C -0.13 -2.95 5.35 -26.73 -0.14 -3.09 16 3 C 0.22 5.33 1.90 -68.86 -0.13 5.20 16 4 H 0.00 0.10 7.84 -51.93 -0.41 -0.31 16 5 C -0.49 -13.33 8.60 -34.44 -0.30 -13.63 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.41 11.29 55.43 0.63 -24.79 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.91 6.12 -99.01 -0.61 -14.52 16 14 C 0.10 1.90 2.67 -65.86 -0.18 1.72 16 15 H 0.10 2.07 7.48 -51.93 -0.39 1.68 16 16 C 0.01 0.21 6.13 -1.90 -0.01 0.19 16 17 N -0.49 -7.32 5.43 -222.49 -1.21 -8.53 16 18 C 0.00 -0.02 5.05 -67.71 -0.34 -0.36 16 19 C -0.16 -1.85 10.46 -26.69 -0.28 -2.13 16 20 C -0.18 -1.87 9.95 -26.69 -0.27 -2.14 16 21 C 0.04 0.61 5.92 -2.75 -0.02 0.60 16 22 C -0.09 -1.49 3.32 -89.26 -0.30 -1.79 16 23 H 0.08 1.20 8.05 -51.93 -0.42 0.79 16 24 C -0.13 -2.04 8.89 37.16 0.33 -1.71 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 28 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.32 6.03 6.08 -39.29 -0.24 5.79 16 32 H 0.04 0.63 7.47 -51.92 -0.39 0.25 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 39 H 0.04 0.51 7.77 -51.93 -0.40 0.11 16 40 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 41 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -27.37 335.39 -10.42 -37.78 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.90 Total: 6.73 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.36 Total: -18.21 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -1.19 Total: -47.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.37 -10.42 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.799 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds