Wall clock time and date at job start Mon Mar 30 2020 04:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47146 * 2 1 4 4 H 1.08995 * 109.47418 * 54.92067 * 3 2 1 5 5 C 1.50704 * 109.47351 * 174.92646 * 3 2 1 6 6 H 1.08001 * 120.00007 * 120.00357 * 5 3 2 7 7 C 1.37875 * 119.99834 * 299.99945 * 5 3 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99952 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47467 * 60.00177 * 9 7 5 11 11 H 1.48503 * 109.46837 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47244 * 299.99743 * 9 7 5 13 13 N 1.46903 * 109.47204 * 294.92343 * 3 2 1 14 14 C 1.47323 * 111.00096 * 138.17424 * 13 3 2 15 15 H 1.10124 * 107.62549 * 328.69478 * 14 13 3 16 16 C 1.52113 * 109.61537 * 86.63428 * 14 13 3 17 17 C 1.52131 * 113.15541 * 79.12688 * 16 14 13 18 18 N 1.45808 * 112.62960 * 45.57127 * 17 16 14 19 19 C 1.45852 * 114.00158 * 70.82280 * 18 17 16 20 20 C 1.52319 * 112.32046 * 289.46494 * 19 18 17 21 21 C 1.52277 * 112.32477 * 312.41695 * 20 19 18 22 22 C 1.52335 * 109.57403 * 210.89117 * 14 13 3 23 23 H 1.10014 * 108.76662 * 47.54253 * 22 14 13 24 24 C 1.46545 * 111.89654 * 302.37573 * 18 17 16 25 25 H 1.09003 * 109.46884 * 175.51194 * 1 2 3 26 26 H 1.09002 * 109.46560 * 295.51213 * 1 2 3 27 27 H 1.08995 * 109.47365 * 55.51380 * 1 2 3 28 28 H 1.09003 * 109.46913 * 240.00493 * 2 1 3 29 29 H 1.08997 * 109.47738 * 120.00306 * 2 1 3 30 30 H 0.97004 * 119.99633 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00391 * 262.12748 * 13 3 2 32 32 H 1.10641 * 107.91215 * 319.88294 * 16 14 13 33 33 H 1.08851 * 110.78609 * 204.16361 * 16 14 13 34 34 H 1.09653 * 109.27065 * 283.95806 * 17 16 14 35 35 H 1.09749 * 109.04020 * 166.83380 * 17 16 14 36 36 H 1.09600 * 109.33030 * 50.80709 * 19 18 17 37 37 H 1.09658 * 109.22011 * 168.36718 * 19 18 17 38 38 H 1.10418 * 108.08871 * 193.16480 * 20 19 18 39 39 H 1.08702 * 110.71465 * 76.79127 * 20 19 18 40 40 H 1.09620 * 109.23022 * 285.40694 * 21 20 19 41 41 H 1.09588 * 109.31168 * 167.68377 * 21 20 19 42 42 H 1.08980 * 109.75079 * 184.23703 * 24 18 17 43 43 H 1.08782 * 110.00379 * 304.99171 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6043 1.9819 0.8409 5 6 3.5418 1.4443 0.1256 6 1 4.1480 1.8887 -0.6499 7 6 4.1418 0.8789 1.2308 8 7 3.4035 0.3384 2.1754 9 14 6.0032 0.8819 1.3869 10 1 6.4977 2.2821 1.3873 11 1 6.3945 0.2179 2.6562 12 1 6.5973 0.1475 0.2411 13 7 1.6530 2.0987 -1.2560 14 6 1.1875 3.4748 -1.0111 15 1 0.7165 3.4954 -0.0159 16 6 2.3771 4.4227 -1.0046 17 6 2.8618 4.7840 -2.4007 18 7 1.7687 5.1260 -3.3030 19 6 1.1292 6.4022 -3.0033 20 6 0.3117 6.3520 -1.7190 21 6 -0.5947 5.1299 -1.6576 22 6 0.1390 3.8514 -2.0501 23 1 -0.5940 3.0346 -2.1254 24 6 0.7952 4.0369 -3.4196 25 1 -0.3633 -1.0246 -0.0804 26 1 -0.3632 0.4426 0.9275 27 1 -0.3634 0.5818 -0.8470 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8257 -0.0597 2.9527 31 1 2.4131 2.0868 -1.9194 32 1 3.2094 3.9206 -0.4761 33 1 2.1531 5.3199 -0.4304 34 1 3.4246 3.9405 -2.8180 35 1 3.5502 5.6359 -2.3314 36 1 1.8962 7.1796 -2.9114 37 1 0.4714 6.6805 -3.8353 38 1 -0.3239 7.2542 -1.6818 39 1 0.9608 6.3940 -0.8481 40 1 -1.4457 5.2772 -2.3327 41 1 -0.9886 5.0215 -0.6408 42 1 0.0363 4.2986 -4.1567 43 1 1.2970 3.1199 -3.7205 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382845663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:35 Heat of formation + Delta-G solvation = -13.744992 kcal Electronic energy + Delta-G solvation = -20421.070100 eV Core-core repulsion = 17692.859768 eV Total energy + Delta-G solvation = -2728.210332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20568 -36.08662 -33.14957 -32.90777 -31.47479 -30.45175 -29.27330 -26.48674 -24.74646 -23.51762 -22.62224 -21.80922 -20.82048 -19.36180 -17.88417 -16.67130 -15.69867 -14.92676 -14.82875 -14.52874 -14.35831 -13.79505 -13.39434 -13.28643 -12.80996 -12.65797 -12.33856 -12.25171 -11.86296 -11.60775 -11.36817 -11.21313 -11.06380 -10.95877 -10.89642 -10.72860 -10.52558 -10.31661 -10.23044 -9.91589 -9.72233 -9.54969 -9.23530 -8.96279 -8.38487 -7.72808 -7.21570 -6.01130 -4.12355 3.26984 3.32527 3.34829 4.28612 4.38074 4.85902 4.99009 5.10301 5.23808 5.30019 5.36087 5.44109 5.54625 5.61884 5.70161 5.79561 5.86149 6.00472 6.05029 6.07430 6.18039 6.28242 6.35931 6.40144 6.41702 6.51484 6.55246 6.59609 6.71210 6.74953 6.88359 7.15289 7.20038 7.45548 7.51311 7.56987 7.60492 7.77954 8.09509 8.17674 8.38078 8.70212 9.02396 9.54439 11.00006 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.007250 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.679415 B = 3861.104664 C = 4544.555540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.024 0.976 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.684 5.684 14 C 0.110 3.890 15 H 0.060 0.940 16 C -0.185 4.185 17 C 0.074 3.926 18 N -0.550 5.550 19 C 0.071 3.929 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.109 4.109 23 H 0.076 0.924 24 C 0.073 3.927 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 9.036 -7.722 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.042 0.958 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.313 5.313 14 C -0.001 4.001 15 H 0.078 0.922 16 C -0.225 4.225 17 C -0.054 4.054 18 N -0.271 5.271 19 C -0.057 4.057 20 C -0.193 4.193 21 C -0.143 4.143 22 C -0.130 4.130 23 H 0.094 0.906 24 C -0.055 4.055 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.937 8.719 -7.957 13.213 hybrid contribution 1.556 0.372 1.382 2.114 sum -4.381 9.091 -6.575 12.044 Atomic orbital electron populations 1.21711 0.99290 0.98435 1.00080 1.21499 0.91866 0.99488 1.01474 1.19175 0.93011 0.91200 0.85619 0.95769 1.21766 0.92438 1.38131 1.05377 0.92757 1.24932 0.97810 0.95047 0.95792 1.69875 1.34856 1.38189 1.09397 0.86733 0.86164 0.78163 0.77379 1.20438 1.21302 1.20250 1.61006 1.41596 1.13962 1.14739 1.21169 0.93005 0.88893 0.97020 0.92226 1.22690 1.01354 1.00583 0.97906 1.21634 0.92452 1.00734 0.90623 1.60295 1.12751 1.02984 1.51103 1.21687 0.96962 0.91422 0.95643 1.22034 0.99476 0.97893 0.99855 1.21285 0.97404 0.94384 1.01266 1.21496 0.98060 0.96611 0.96825 0.90594 1.21867 0.94022 0.94091 0.95479 0.95716 0.94829 0.93247 0.95049 0.89442 0.92869 0.85418 0.89842 0.92772 0.91105 0.92091 0.91732 0.91693 0.93046 0.91503 0.92745 0.92518 0.91755 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.10 -2.50 5.45 -26.73 -0.15 -2.64 16 3 C 0.22 5.23 1.97 -68.86 -0.14 5.10 16 4 H 0.02 0.66 7.07 -51.93 -0.37 0.29 16 5 C -0.54 -14.03 7.37 -34.44 -0.25 -14.28 16 6 H 0.05 1.40 7.23 -52.49 -0.38 1.02 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.16 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.72 5.26 -101.05 -0.53 -14.25 16 14 C 0.11 1.96 2.09 -68.27 -0.14 1.82 16 15 H 0.06 1.20 7.17 -51.29 -0.37 0.83 16 16 C -0.18 -3.16 4.52 -27.63 -0.12 -3.28 16 17 C 0.07 1.12 5.55 -4.86 -0.03 1.09 16 18 N -0.55 -7.69 4.79 -236.61 -1.13 -8.82 16 19 C 0.07 0.87 5.77 -4.74 -0.03 0.85 16 20 C -0.15 -1.89 5.18 -27.45 -0.14 -2.03 16 21 C -0.11 -1.38 5.38 -27.34 -0.15 -1.53 16 22 C -0.11 -1.63 2.56 -91.20 -0.23 -1.87 16 23 H 0.08 1.20 8.23 -51.35 -0.42 0.78 16 24 C 0.07 1.03 5.62 -4.02 -0.02 1.01 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.98 7.64 -51.93 -0.40 0.58 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.33 6.70 7.11 -39.29 -0.28 6.42 16 32 H 0.08 1.69 6.50 -50.99 -0.33 1.36 16 33 H 0.05 0.89 5.79 -52.01 -0.30 0.59 16 34 H 0.07 1.13 7.87 -51.56 -0.41 0.72 16 35 H 0.06 0.87 8.11 -51.50 -0.42 0.45 16 36 H 0.06 0.75 8.10 -51.59 -0.42 0.33 16 37 H 0.06 0.73 8.20 -51.56 -0.42 0.31 16 38 H 0.05 0.55 8.26 -51.12 -0.42 0.13 16 39 H 0.07 0.90 5.65 -52.10 -0.29 0.61 16 40 H 0.05 0.65 8.19 -51.58 -0.42 0.22 16 41 H 0.06 0.77 8.16 -51.60 -0.42 0.35 16 42 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 43 H 0.08 1.21 7.83 -52.05 -0.41 0.80 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -26.16 312.74 -10.09 -36.25 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.61 Total: 6.97 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.13 Total: -16.57 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -1.04 Total: -47.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.16 -10.09 -36.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382845663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.501 kcal (2) G-P(sol) polarization free energy of solvation -26.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds