Wall clock time and date at job start Mon Mar 30 2020 04:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47146 * 2 1 4 4 H 1.08995 * 109.47418 * 54.92067 * 3 2 1 5 5 C 1.50704 * 109.47351 * 174.92646 * 3 2 1 6 6 H 1.08001 * 120.00007 * 120.00357 * 5 3 2 7 7 C 1.37875 * 119.99834 * 299.99945 * 5 3 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99952 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47467 * 60.00177 * 9 7 5 11 11 H 1.48503 * 109.46837 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47244 * 299.99743 * 9 7 5 13 13 N 1.46903 * 109.47204 * 294.92343 * 3 2 1 14 14 C 1.47323 * 111.00096 * 138.17424 * 13 3 2 15 15 H 1.10124 * 107.62549 * 328.69478 * 14 13 3 16 16 C 1.52113 * 109.61537 * 86.63428 * 14 13 3 17 17 C 1.52131 * 113.15541 * 79.12688 * 16 14 13 18 18 N 1.45808 * 112.62960 * 45.57127 * 17 16 14 19 19 C 1.45852 * 114.00158 * 70.82280 * 18 17 16 20 20 C 1.52319 * 112.32046 * 289.46494 * 19 18 17 21 21 C 1.52277 * 112.32477 * 312.41695 * 20 19 18 22 22 C 1.52335 * 109.57403 * 210.89117 * 14 13 3 23 23 H 1.10014 * 108.76662 * 47.54253 * 22 14 13 24 24 C 1.46545 * 111.89654 * 302.37573 * 18 17 16 25 25 H 1.09003 * 109.46884 * 175.51194 * 1 2 3 26 26 H 1.09002 * 109.46560 * 295.51213 * 1 2 3 27 27 H 1.08995 * 109.47365 * 55.51380 * 1 2 3 28 28 H 1.09003 * 109.46913 * 240.00493 * 2 1 3 29 29 H 1.08997 * 109.47738 * 120.00306 * 2 1 3 30 30 H 0.97004 * 119.99633 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00391 * 262.12748 * 13 3 2 32 32 H 1.10641 * 107.91215 * 319.88294 * 16 14 13 33 33 H 1.08851 * 110.78609 * 204.16361 * 16 14 13 34 34 H 1.09653 * 109.27065 * 283.95806 * 17 16 14 35 35 H 1.09749 * 109.04020 * 166.83380 * 17 16 14 36 36 H 1.09600 * 109.33030 * 50.80709 * 19 18 17 37 37 H 1.09658 * 109.22011 * 168.36718 * 19 18 17 38 38 H 1.10418 * 108.08871 * 193.16480 * 20 19 18 39 39 H 1.08702 * 110.71465 * 76.79127 * 20 19 18 40 40 H 1.09620 * 109.23022 * 285.40694 * 21 20 19 41 41 H 1.09588 * 109.31168 * 167.68377 * 21 20 19 42 42 H 1.08980 * 109.75079 * 184.23703 * 24 18 17 43 43 H 1.08782 * 110.00379 * 304.99171 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6043 1.9819 0.8409 5 6 3.5418 1.4443 0.1256 6 1 4.1480 1.8887 -0.6499 7 6 4.1418 0.8789 1.2308 8 7 3.4035 0.3384 2.1754 9 14 6.0032 0.8819 1.3869 10 1 6.4977 2.2821 1.3873 11 1 6.3945 0.2179 2.6562 12 1 6.5973 0.1475 0.2411 13 7 1.6530 2.0987 -1.2560 14 6 1.1875 3.4748 -1.0111 15 1 0.7165 3.4954 -0.0159 16 6 2.3771 4.4227 -1.0046 17 6 2.8618 4.7840 -2.4007 18 7 1.7687 5.1260 -3.3030 19 6 1.1292 6.4022 -3.0033 20 6 0.3117 6.3520 -1.7190 21 6 -0.5947 5.1299 -1.6576 22 6 0.1390 3.8514 -2.0501 23 1 -0.5940 3.0346 -2.1254 24 6 0.7952 4.0369 -3.4196 25 1 -0.3633 -1.0246 -0.0804 26 1 -0.3632 0.4426 0.9275 27 1 -0.3634 0.5818 -0.8470 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8257 -0.0597 2.9527 31 1 2.4131 2.0868 -1.9194 32 1 3.2094 3.9206 -0.4761 33 1 2.1531 5.3199 -0.4304 34 1 3.4246 3.9405 -2.8180 35 1 3.5502 5.6359 -2.3314 36 1 1.8962 7.1796 -2.9114 37 1 0.4714 6.6805 -3.8353 38 1 -0.3239 7.2542 -1.6818 39 1 0.9608 6.3940 -0.8481 40 1 -1.4457 5.2772 -2.3327 41 1 -0.9886 5.0215 -0.6408 42 1 0.0363 4.2986 -4.1567 43 1 1.2970 3.1199 -3.7205 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382845663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:35 Heat of formation + Delta-G solvation = -29.739299 kcal Electronic energy + Delta-G solvation = -20421.763665 eV Core-core repulsion = 17692.859768 eV Total energy + Delta-G solvation = -2728.903897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43840 -37.81132 -34.83593 -34.05499 -33.35258 -31.63141 -30.83148 -28.28376 -26.17581 -24.72840 -24.46016 -23.00390 -22.08956 -21.22890 -19.22643 -18.56107 -17.03324 -16.67808 -16.20996 -15.81581 -15.63790 -15.33664 -14.99231 -14.68019 -14.33311 -14.19163 -13.74182 -13.51613 -13.25772 -13.20040 -13.04694 -12.88508 -12.61186 -12.58063 -12.28219 -12.14434 -12.12115 -11.85395 -11.71688 -11.46942 -11.25528 -11.13256 -10.89228 -10.69226 -10.44570 -8.97439 -8.88711 -8.06317 -6.25723 1.38009 1.39099 1.46024 2.39399 3.13570 3.17583 3.56056 3.88133 3.92200 4.07668 4.15045 4.19674 4.31569 4.40021 4.54151 4.60535 4.60942 4.72506 4.75379 4.79851 4.87032 4.93022 4.99343 5.06520 5.09020 5.10824 5.19400 5.23734 5.30716 5.36830 5.41818 5.43427 5.51052 5.58310 5.67811 5.78099 6.09381 6.23269 6.31732 6.44683 6.45985 6.84648 7.07472 7.44736 8.91669 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.007250 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.679415 B = 3861.104664 C = 4544.555540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.228 3.772 4 H -0.013 1.013 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.114 3.886 15 H 0.028 0.972 16 C -0.173 4.173 17 C 0.080 3.920 18 N -0.549 5.549 19 C 0.068 3.932 20 C -0.152 4.152 21 C -0.104 4.104 22 C -0.103 4.103 23 H 0.068 0.932 24 C 0.077 3.923 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 10.423 -9.530 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.119 3.881 4 H 0.005 0.995 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.302 5.302 14 C 0.003 3.997 15 H 0.046 0.954 16 C -0.213 4.213 17 C -0.048 4.048 18 N -0.270 5.270 19 C -0.059 4.059 20 C -0.191 4.191 21 C -0.142 4.142 22 C -0.124 4.124 23 H 0.087 0.913 24 C -0.051 4.051 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.353 10.122 -9.783 15.444 hybrid contribution 1.643 -0.024 1.952 2.551 sum -4.710 10.098 -7.831 13.619 Atomic orbital electron populations 1.21559 0.96718 0.99880 1.00055 1.21368 0.94170 0.98774 0.99724 1.18911 0.91896 0.91305 0.85981 0.99465 1.22068 0.93618 1.37531 1.05293 0.92803 1.25663 1.01915 0.94949 0.95660 1.70015 1.36393 1.39044 1.09824 0.85769 0.81274 0.78204 0.77335 1.19999 1.21176 1.19652 1.60979 1.40998 1.15482 1.12755 1.21192 0.93913 0.87873 0.96689 0.95361 1.22580 0.99478 1.00049 0.99228 1.21534 0.93177 1.00891 0.89203 1.60323 1.12643 1.03711 1.50290 1.21813 0.97520 0.90466 0.96151 1.21996 0.99431 0.98364 0.99297 1.21276 0.98015 0.93619 1.01266 1.21420 0.96910 0.97564 0.96474 0.91332 1.21860 0.94313 0.93879 0.95039 0.93641 0.95573 0.92304 0.95384 0.92430 0.93038 0.85446 0.93652 0.92209 0.92165 0.90767 0.90748 0.89656 0.90708 0.93217 0.90449 0.93515 0.89405 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.10 -4.97 5.45 30.59 0.17 -4.80 16 3 C 0.23 11.35 1.97 44.17 0.09 11.44 16 4 H -0.01 -0.71 7.07 -2.39 -0.02 -0.73 16 5 C -0.55 -29.27 7.37 25.60 0.19 -29.08 16 6 H 0.05 2.83 7.23 -2.91 -0.02 2.81 16 7 C 0.02 0.98 5.29 84.65 0.45 1.42 16 8 N -0.91 -52.72 11.29 21.45 0.24 -52.48 16 9 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.67 -27.59 5.26 -473.63 -2.49 -30.08 16 14 C 0.11 4.12 2.09 44.32 0.09 4.21 16 15 H 0.03 1.19 7.17 -1.79 -0.01 1.18 16 16 C -0.17 -5.96 4.52 30.01 0.14 -5.83 16 17 C 0.08 2.35 5.55 86.22 0.48 2.83 16 18 N -0.55 -13.93 4.79 -902.49 -4.33 -18.26 16 19 C 0.07 1.43 5.77 86.28 0.50 1.93 16 20 C -0.15 -3.32 5.18 30.13 0.16 -3.16 16 21 C -0.10 -2.49 5.38 30.20 0.16 -2.33 16 22 C -0.10 -2.95 2.56 -11.17 -0.03 -2.98 16 23 H 0.07 2.08 8.23 -1.84 -0.02 2.06 16 24 C 0.08 1.98 5.62 86.37 0.49 2.46 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 2.30 7.64 -2.39 -0.02 2.28 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 3.18 5.95 -2.39 -0.01 3.17 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.33 13.57 7.11 -89.70 -0.64 12.94 16 32 H 0.04 1.90 6.50 -1.50 -0.01 1.89 16 33 H 0.06 1.98 5.79 -2.47 -0.01 1.97 16 34 H 0.06 1.88 7.87 -2.04 -0.02 1.87 16 35 H 0.07 1.98 8.11 -1.99 -0.02 1.96 16 36 H 0.07 1.45 8.10 -2.07 -0.02 1.43 16 37 H 0.09 1.51 8.20 -2.04 -0.02 1.49 16 38 H 0.07 1.33 8.26 -1.63 -0.01 1.31 16 39 H 0.05 1.26 5.65 -2.54 -0.01 1.24 16 40 H 0.08 1.55 8.19 -2.06 -0.02 1.53 16 41 H 0.05 1.21 8.16 -2.07 -0.02 1.20 16 42 H 0.09 1.91 8.14 -2.40 -0.02 1.89 16 43 H 0.07 1.94 7.83 -2.50 -0.02 1.92 16 Total: -1.00 -57.28 312.74 -0.61 -57.89 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.37 Total: 25.73 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.58 Total: -28.33 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -6.58 Total: -100.82 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -57.28 -0.61 -57.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382845663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.150 kcal (2) G-P(sol) polarization free energy of solvation -57.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds