Wall clock time and date at job start Mon Mar 30 2020 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 H 1.09004 * 109.46949 * 54.97613 * 3 2 1 5 5 C 1.50696 * 109.47078 * 174.98115 * 3 2 1 6 6 H 1.07999 * 119.99569 * 120.00328 * 5 3 2 7 7 C 1.37874 * 120.00130 * 299.99982 * 5 3 2 8 8 N 1.31516 * 120.00129 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47279 * 89.99778 * 9 7 5 11 11 H 1.48500 * 109.47120 * 210.00205 * 9 7 5 12 12 H 1.48502 * 109.46896 * 329.99850 * 9 7 5 13 13 N 1.46900 * 109.47132 * 294.98173 * 3 2 1 14 14 C 1.47186 * 111.00110 * 156.37315 * 13 3 2 15 15 H 1.10127 * 107.70021 * 36.18709 * 14 13 3 16 16 C 1.52297 * 109.63826 * 278.28506 * 14 13 3 17 17 C 1.52288 * 112.37325 * 191.12994 * 16 14 13 18 18 N 1.45845 * 112.45389 * 46.92527 * 17 16 14 19 19 C 1.45888 * 113.84623 * 71.06937 * 18 17 16 20 20 C 1.52288 * 112.29553 * 289.38954 * 19 18 17 21 21 C 1.52234 * 112.42289 * 313.01871 * 20 19 18 22 22 C 1.52225 * 112.58694 * 45.71287 * 21 20 19 23 23 H 1.10042 * 108.76451 * 188.82916 * 22 21 20 24 24 C 1.46524 * 112.14305 * 302.54765 * 18 17 16 25 25 H 1.09002 * 109.47271 * 55.39326 * 1 2 3 26 26 H 1.08999 * 109.46922 * 175.38602 * 1 2 3 27 27 H 1.08997 * 109.47200 * 295.39096 * 1 2 3 28 28 H 1.09002 * 109.46944 * 240.00664 * 2 1 3 29 29 H 1.08994 * 109.47356 * 119.99924 * 2 1 3 30 30 H 0.96996 * 120.00515 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00227 * 280.33369 * 13 3 2 32 32 H 1.08599 * 110.93569 * 315.98196 * 16 14 13 33 33 H 1.10529 * 107.96680 * 72.23342 * 16 14 13 34 34 H 1.09655 * 109.08948 * 168.27555 * 17 16 14 35 35 H 1.09628 * 109.11192 * 285.55885 * 17 16 14 36 36 H 1.09609 * 109.28056 * 50.65920 * 19 18 17 37 37 H 1.09645 * 109.22664 * 168.21796 * 19 18 17 38 38 H 1.08650 * 110.84601 * 77.82274 * 20 19 18 39 39 H 1.10517 * 107.94193 * 193.95526 * 20 19 18 40 40 H 1.10034 * 108.71656 * 285.12742 * 21 20 19 41 41 H 1.09420 * 109.51428 * 168.51272 * 21 20 19 42 42 H 1.08836 * 109.96559 * 305.24064 * 24 18 17 43 43 H 1.08822 * 109.98253 * 183.95823 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 1.9817 0.8416 5 6 3.5418 1.4444 0.1243 6 1 4.1473 1.8890 -0.6517 7 6 4.1429 0.8786 1.2286 8 7 3.4056 0.3369 2.1734 9 14 6.0045 0.8816 1.3830 10 1 6.4409 2.1146 2.0861 11 1 6.4389 -0.3094 2.1564 12 1 6.6135 0.8418 0.0292 13 7 1.6517 2.0992 -1.2554 14 6 1.6044 3.5613 -1.0933 15 1 2.4188 3.8490 -0.4101 16 6 0.2782 3.9635 -0.4616 17 6 0.0451 5.4676 -0.5112 18 7 0.3233 6.0313 -1.8273 19 6 -0.6584 5.6686 -2.8438 20 6 -0.5665 4.2005 -3.2378 21 6 0.8659 3.7595 -3.5050 22 6 1.8355 4.2428 -2.4357 23 1 2.8630 4.0301 -2.7673 24 6 1.6947 5.7598 -2.2657 25 1 -0.3634 0.5837 -0.8458 26 1 -0.3633 -1.0243 -0.0827 27 1 -0.3633 0.4406 0.9284 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8284 -0.0615 2.9502 31 1 2.2726 1.8386 -2.0069 32 1 -0.5480 3.4272 -0.9190 33 1 0.2997 3.6576 0.6003 34 1 -0.9966 5.6782 -0.2409 35 1 0.6856 5.9549 0.2331 36 1 -1.6656 5.8768 -2.4648 37 1 -0.5026 6.2895 -3.7339 38 1 -1.0336 3.5687 -2.4874 39 1 -1.1468 4.0607 -4.1680 40 1 1.1834 4.1618 -4.4787 41 1 0.9043 2.6686 -3.5812 42 1 2.4010 6.1105 -1.5156 43 1 1.8859 6.2535 -3.2164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382845666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:38 Heat of formation + Delta-G solvation = -14.073353 kcal Electronic energy + Delta-G solvation = -20389.048311 eV Core-core repulsion = 17660.823741 eV Total energy + Delta-G solvation = -2728.224570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17294 -36.09973 -33.22558 -32.78034 -31.52134 -30.46620 -29.41056 -26.34027 -25.01817 -23.48031 -22.47100 -21.61084 -20.82508 -19.35886 -18.01517 -16.55959 -15.66322 -14.93564 -14.89186 -14.62484 -14.26944 -14.18966 -13.39252 -13.05243 -12.79859 -12.51009 -12.37488 -12.24404 -11.81902 -11.70901 -11.37915 -11.24282 -11.02998 -10.96811 -10.86290 -10.80495 -10.67104 -10.34190 -10.18157 -9.79311 -9.54980 -9.51128 -9.37409 -8.98388 -8.36753 -7.81843 -7.19979 -5.99487 -4.12694 3.25424 3.32934 3.35431 4.21410 4.38724 4.91092 4.96405 5.19154 5.24494 5.29727 5.34205 5.47089 5.54223 5.56060 5.70341 5.77291 5.80283 6.01574 6.09351 6.12558 6.20738 6.30561 6.34077 6.38866 6.43822 6.52100 6.58607 6.63745 6.71106 6.73447 6.94568 7.14573 7.18252 7.38023 7.46768 7.50175 7.61517 7.78269 8.10388 8.18668 8.36164 8.69596 9.01299 9.55055 11.00097 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.006850 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.993672 B = 4086.349135 C = 4533.335541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.107 3.893 15 H 0.041 0.959 16 C -0.139 4.139 17 C 0.070 3.930 18 N -0.550 5.550 19 C 0.071 3.929 20 C -0.149 4.149 21 C -0.095 4.095 22 C -0.120 4.120 23 H 0.064 0.936 24 C 0.071 3.929 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.034 0.966 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.325 0.675 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 8.200 -8.225 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.313 5.313 14 C -0.003 4.003 15 H 0.059 0.941 16 C -0.179 4.179 17 C -0.059 4.059 18 N -0.271 5.271 19 C -0.058 4.058 20 C -0.188 4.188 21 C -0.133 4.133 22 C -0.141 4.141 23 H 0.083 0.917 24 C -0.058 4.058 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.257 8.490 -7.867 13.661 hybrid contribution 2.168 -0.854 0.180 2.337 sum -5.090 7.636 -7.687 11.971 Atomic orbital electron populations 1.21702 0.99089 0.98349 1.00272 1.21489 0.92033 0.99419 1.01507 1.19139 0.92506 0.91063 0.86416 0.95004 1.21878 0.92931 1.38056 1.05457 0.93043 1.24926 0.97802 0.95032 0.95741 1.69874 1.34766 1.38281 1.09424 0.86684 0.86233 0.77536 0.78063 1.20780 1.21160 1.20061 1.60947 1.56241 1.04810 1.09282 1.20962 0.95798 0.89860 0.93692 0.94077 1.22017 0.98683 0.95599 1.01589 1.21761 1.01036 0.93240 0.89838 1.60238 1.02871 1.61083 1.02938 1.21716 0.95340 0.94106 0.94616 1.21958 0.97304 0.97828 1.01699 1.21068 0.93907 1.01724 0.96601 1.21669 0.99268 0.96854 0.96281 0.91712 1.21967 0.89578 0.93793 1.00452 0.93195 0.95793 0.94659 0.95304 0.89284 0.92919 0.85789 0.91188 0.92527 0.91646 0.91457 0.91656 0.91773 0.90946 0.93239 0.93826 0.91069 0.90839 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 37.16 0.37 -2.46 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.25 1.77 -68.87 -0.12 5.13 16 4 H 0.03 0.87 6.97 -51.93 -0.36 0.50 16 5 C -0.54 -14.53 8.12 -34.44 -0.28 -14.81 16 6 H 0.05 1.38 7.76 -52.49 -0.41 0.97 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.98 11.29 55.43 0.63 -24.36 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -13.82 4.77 -101.06 -0.48 -14.31 16 14 C 0.11 1.95 2.06 -68.26 -0.14 1.81 16 15 H 0.04 0.88 7.54 -51.29 -0.39 0.50 16 16 C -0.14 -2.33 4.54 -27.45 -0.12 -2.46 16 17 C 0.07 1.00 5.76 -4.76 -0.03 0.97 16 18 N -0.55 -7.46 4.79 -236.40 -1.13 -8.59 16 19 C 0.07 0.85 5.77 -4.74 -0.03 0.83 16 20 C -0.15 -1.91 5.15 -27.49 -0.14 -2.05 16 21 C -0.10 -1.32 5.22 -27.52 -0.14 -1.46 16 22 C -0.12 -1.83 2.34 -91.21 -0.21 -2.04 16 23 H 0.06 1.01 8.23 -51.34 -0.42 0.59 16 24 C 0.07 0.97 5.69 -3.88 -0.02 0.95 16 25 H 0.05 0.99 7.63 -51.93 -0.40 0.59 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.33 6.67 7.74 -39.29 -0.30 6.36 16 32 H 0.07 1.19 5.67 -52.15 -0.30 0.89 16 33 H 0.06 1.06 7.45 -51.05 -0.38 0.68 16 34 H 0.07 0.85 8.09 -51.56 -0.42 0.43 16 35 H 0.07 0.97 8.19 -51.57 -0.42 0.55 16 36 H 0.06 0.74 8.09 -51.58 -0.42 0.32 16 37 H 0.06 0.72 8.20 -51.56 -0.42 0.29 16 38 H 0.07 1.04 5.68 -52.13 -0.30 0.74 16 39 H 0.05 0.57 8.27 -51.06 -0.42 0.14 16 40 H 0.04 0.55 8.23 -51.34 -0.42 0.13 16 41 H 0.07 1.08 7.31 -51.69 -0.38 0.70 16 42 H 0.07 1.03 8.13 -52.02 -0.42 0.61 16 43 H 0.07 0.87 8.13 -52.03 -0.42 0.44 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -26.81 314.72 -10.09 -36.90 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.71 Total: 6.01 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.12 Total: -16.53 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.99 Total: -47.25 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.81 -10.09 -36.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382845666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.827 kcal (2) G-P(sol) polarization free energy of solvation -26.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds