Wall clock time and date at job start Mon Mar 30 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47427 * 2 1 4 4 H 1.08999 * 109.47558 * 305.63444 * 3 2 1 5 5 C 1.50701 * 109.47538 * 185.63463 * 3 2 1 6 6 H 1.07999 * 120.00263 * 240.00555 * 5 3 2 7 7 C 1.37883 * 119.99523 * 59.99641 * 5 3 2 8 8 N 1.31514 * 120.00217 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99964 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46871 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47005 * 119.99994 * 9 7 5 12 12 H 1.48493 * 109.47067 * 240.00544 * 9 7 5 13 13 N 1.46904 * 109.47097 * 65.63623 * 3 2 1 14 14 C 1.47370 * 110.99765 * 205.68522 * 13 3 2 15 15 H 1.10172 * 107.53209 * 325.06124 * 14 13 3 16 16 C 1.52061 * 109.55360 * 82.86513 * 14 13 3 17 17 C 1.52043 * 113.51246 * 80.55392 * 16 14 13 18 18 N 1.45684 * 112.96601 * 44.10949 * 17 16 14 19 19 C 1.46025 * 114.18695 * 71.47334 * 18 17 16 20 20 C 1.52540 * 111.76656 * 290.85160 * 19 18 17 21 21 C 1.52513 * 111.56210 * 309.98799 * 20 19 18 22 22 C 1.52290 * 109.53058 * 207.39082 * 14 13 3 23 23 H 1.10006 * 108.80935 * 46.92827 * 22 14 13 24 24 C 1.46580 * 111.95736 * 303.14141 * 18 17 16 25 25 H 1.08996 * 109.47934 * 174.11902 * 1 2 3 26 26 H 1.09002 * 109.47187 * 294.12548 * 1 2 3 27 27 H 1.09009 * 109.46963 * 54.12075 * 1 2 3 28 28 H 1.09003 * 109.47104 * 239.99638 * 2 1 3 29 29 H 1.09005 * 109.47078 * 120.00021 * 2 1 3 30 30 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 31 31 H 1.00892 * 111.00333 * 329.64227 * 13 3 2 32 32 H 1.08879 * 110.82744 * 205.95485 * 16 14 13 33 33 H 1.10752 * 107.80673 * 321.28538 * 16 14 13 34 34 H 1.09760 * 109.15597 * 282.45497 * 17 16 14 35 35 H 1.09794 * 109.05638 * 165.63671 * 17 16 14 36 36 H 1.09488 * 109.36438 * 51.81462 * 19 18 17 37 37 H 1.09504 * 109.33972 * 169.92626 * 19 18 17 38 38 H 1.08408 * 110.97135 * 74.30913 * 20 19 18 39 39 H 1.10330 * 108.04573 * 191.26869 * 20 19 18 40 40 H 1.09487 * 109.29976 * 169.62614 * 21 20 19 41 41 H 1.09506 * 109.24944 * 287.69537 * 21 20 19 42 42 H 1.08976 * 109.73333 * 184.32484 * 24 18 17 43 43 H 1.08769 * 109.99552 * 305.10541 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1395 6 1 4.1539 1.8863 0.6319 7 6 4.1303 0.8828 -1.2520 8 7 3.3833 0.3453 -2.1915 9 14 5.9903 0.8850 -1.4247 10 1 6.5966 1.5448 -0.2404 11 1 6.4805 -0.5137 -1.5165 12 1 6.3724 1.6252 -2.6540 13 7 1.6646 2.0945 1.2617 14 6 1.5679 3.5553 1.0927 15 1 2.3417 3.8576 0.3690 16 6 0.2047 3.9125 0.5214 17 6 -0.9002 3.9474 1.5651 18 7 -0.5033 4.6280 2.7906 19 6 -0.3709 6.0759 2.6547 20 6 0.8238 6.4556 1.7856 21 6 2.0928 5.7372 2.2324 22 6 1.8559 4.2417 2.4213 23 1 2.7598 3.7959 2.8622 24 6 0.6911 4.0257 3.3898 25 1 -0.3635 -1.0222 -0.1053 26 1 -0.3634 0.4200 0.9379 27 1 -0.3633 0.6023 -0.8327 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7982 -0.0497 -2.9743 31 1 0.8025 1.7145 1.6227 32 1 0.2487 4.8527 -0.0260 33 1 -0.0618 3.1405 -0.2267 34 1 -1.2016 2.9196 1.8051 35 1 -1.7780 4.4526 1.1412 36 1 -1.2836 6.4837 2.2082 37 1 -0.2495 6.5236 3.6467 38 1 0.6180 6.2649 0.7385 39 1 0.9898 7.5414 1.8883 40 1 2.8766 5.8872 1.4828 41 1 2.4389 6.1697 3.1771 42 1 0.9106 4.5113 4.3404 43 1 0.5308 2.9619 3.5499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382845667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:41 Heat of formation + Delta-G solvation = -11.411245 kcal Electronic energy + Delta-G solvation = -20415.373020 eV Core-core repulsion = 17687.263887 eV Total energy + Delta-G solvation = -2728.109133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26065 -36.22996 -33.14918 -32.93297 -31.56387 -30.43731 -29.31459 -26.47905 -24.86354 -23.58826 -22.69302 -21.85268 -20.89823 -19.44886 -17.85475 -16.18072 -15.86427 -15.10510 -14.85552 -14.54879 -14.43490 -13.92807 -13.55849 -13.31855 -12.88454 -12.64582 -12.46147 -12.34713 -11.92046 -11.77458 -11.51288 -11.25263 -11.15589 -11.00106 -10.84753 -10.61763 -10.54791 -10.33249 -9.98022 -9.94351 -9.81684 -9.65690 -9.38074 -8.99974 -8.33955 -7.77968 -7.16441 -5.95510 -3.99165 3.31120 3.39241 3.44406 4.21868 4.45543 4.85611 4.98316 5.11291 5.25875 5.26925 5.32996 5.41156 5.48290 5.56975 5.65277 5.70448 5.82789 5.98396 6.02074 6.03120 6.13991 6.16039 6.18713 6.21731 6.30710 6.39287 6.42516 6.47926 6.59039 6.73877 6.78000 6.86351 7.11533 7.21727 7.38283 7.49210 7.55296 7.80456 7.94694 8.36044 8.43494 8.81414 9.09728 9.65907 11.09763 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.007015 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.734241 B = 3990.352629 C = 4649.789556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.680 5.680 14 C 0.107 3.893 15 H 0.075 0.925 16 C -0.180 4.180 17 C 0.074 3.926 18 N -0.550 5.550 19 C 0.070 3.930 20 C -0.155 4.155 21 C -0.107 4.107 22 C -0.108 4.108 23 H 0.080 0.920 24 C 0.071 3.929 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.315 0.685 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 8.743 7.593 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.310 5.310 14 C -0.004 4.004 15 H 0.093 0.907 16 C -0.221 4.221 17 C -0.054 4.054 18 N -0.271 5.271 19 C -0.058 4.058 20 C -0.194 4.194 21 C -0.145 4.145 22 C -0.128 4.128 23 H 0.099 0.901 24 C -0.057 4.057 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.984 8.591 7.952 13.631 hybrid contribution 0.863 0.172 -1.480 1.722 sum -6.121 8.763 6.472 12.496 Atomic orbital electron populations 1.21875 0.99639 0.99641 0.99437 1.21769 0.91191 1.00537 1.02975 1.19151 0.95231 0.89778 0.84586 0.98097 1.21271 0.91413 1.36118 1.04064 0.92111 1.24960 0.97975 0.95759 0.95926 1.69884 1.34508 1.39749 1.09571 0.86526 0.86005 0.77590 0.77795 1.19820 1.21145 1.21321 1.60957 1.36198 1.01514 1.32352 1.21116 0.94283 0.89938 0.95093 0.90669 1.22678 0.97970 1.02310 0.99127 1.21594 0.96323 0.99015 0.88483 1.60312 1.36334 1.03125 1.27341 1.21764 0.96750 0.87960 0.99319 1.22108 0.96667 0.99682 1.00977 1.21340 0.96907 0.95274 1.00986 1.21464 1.00100 0.94096 0.97166 0.90147 1.21912 0.87703 0.99896 0.96143 0.94453 0.94643 0.94006 0.88360 0.94135 0.93214 0.86757 0.92258 0.92094 0.91429 0.91992 0.91710 0.91448 0.91377 0.92965 0.92187 0.92627 0.91546 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.64 37.15 0.36 -2.50 16 2 C -0.13 -2.96 5.36 -26.74 -0.14 -3.10 16 3 C 0.22 5.36 1.65 -68.87 -0.11 5.25 16 4 H 0.00 0.04 6.99 -51.93 -0.36 -0.32 16 5 C -0.49 -13.43 8.47 -34.44 -0.29 -13.73 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.53 11.29 55.43 0.63 -24.91 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.68 -13.97 5.86 -101.05 -0.59 -14.56 16 14 C 0.11 1.95 1.92 -68.30 -0.13 1.82 16 15 H 0.08 1.63 7.55 -51.26 -0.39 1.24 16 16 C -0.18 -2.92 4.43 -27.70 -0.12 -3.05 16 17 C 0.07 1.04 5.57 -4.97 -0.03 1.02 16 18 N -0.55 -7.42 4.79 -236.50 -1.13 -8.55 16 19 C 0.07 0.84 5.79 -4.53 -0.03 0.81 16 20 C -0.16 -1.92 5.23 -27.22 -0.14 -2.06 16 21 C -0.11 -1.46 5.40 -27.19 -0.15 -1.61 16 22 C -0.11 -1.69 2.56 -91.18 -0.23 -1.92 16 23 H 0.08 1.38 8.23 -51.36 -0.42 0.96 16 24 C 0.07 1.00 5.62 -3.99 -0.02 0.98 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.61 6.66 -51.93 -0.35 0.27 16 27 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.31 6.04 5.73 -39.30 -0.23 5.82 16 32 H 0.06 0.93 5.84 -52.00 -0.30 0.63 16 33 H 0.06 1.10 7.17 -50.92 -0.36 0.74 16 34 H 0.07 0.97 8.03 -51.50 -0.41 0.56 16 35 H 0.06 0.80 8.13 -51.48 -0.42 0.38 16 36 H 0.06 0.71 8.12 -51.65 -0.42 0.29 16 37 H 0.07 0.74 8.18 -51.64 -0.42 0.32 16 38 H 0.07 0.91 5.51 -52.26 -0.29 0.62 16 39 H 0.05 0.56 8.25 -51.17 -0.42 0.14 16 40 H 0.06 0.87 8.16 -51.65 -0.42 0.45 16 41 H 0.05 0.69 8.18 -51.64 -0.42 0.27 16 42 H 0.07 0.85 8.14 -51.94 -0.42 0.43 16 43 H 0.08 1.18 7.70 -52.06 -0.40 0.77 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -27.46 312.77 -10.13 -37.59 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.58 Total: 5.86 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.14 Total: -16.70 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -1.10 Total: -48.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.46 -10.13 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382845667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.174 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds