Wall clock time and date at job start Mon Mar 30 2020 04:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47294 * 2 1 4 4 H 1.08996 * 109.47238 * 305.53646 * 3 2 1 5 5 C 1.50693 * 109.47311 * 185.52871 * 3 2 1 6 6 H 1.08001 * 120.00441 * 239.72842 * 5 3 2 7 7 C 1.37887 * 120.00207 * 60.00497 * 5 3 2 8 8 N 1.31516 * 119.99271 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47502 * 89.99791 * 9 7 5 11 11 H 1.48506 * 109.46793 * 210.00104 * 9 7 5 12 12 H 1.48506 * 109.47077 * 329.99587 * 9 7 5 13 13 N 1.46900 * 109.46877 * 65.53229 * 3 2 1 14 14 C 1.47167 * 111.00335 * 208.35953 * 13 3 2 15 15 H 1.10111 * 107.72534 * 30.58620 * 14 13 3 16 16 C 1.52299 * 109.66517 * 272.63486 * 14 13 3 17 17 C 1.52277 * 112.37789 * 191.01153 * 16 14 13 18 18 N 1.45821 * 112.55188 * 46.74596 * 17 16 14 19 19 C 1.45893 * 113.83784 * 71.36716 * 18 17 16 20 20 C 1.52290 * 112.20193 * 289.68322 * 19 18 17 21 21 C 1.52223 * 112.41830 * 312.84349 * 20 19 18 22 22 C 1.52213 * 112.66105 * 45.57573 * 21 20 19 23 23 H 1.10060 * 108.76760 * 189.09362 * 22 21 20 24 24 C 1.46517 * 112.23244 * 302.89191 * 18 17 16 25 25 H 1.08999 * 109.46556 * 294.07463 * 1 2 3 26 26 H 1.08991 * 109.47048 * 54.07612 * 1 2 3 27 27 H 1.09003 * 109.46871 * 174.08327 * 1 2 3 28 28 H 1.09005 * 109.47049 * 240.00606 * 2 1 3 29 29 H 1.08995 * 109.47760 * 120.00343 * 2 1 3 30 30 H 0.97002 * 119.99467 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99917 * 332.31467 * 13 3 2 32 32 H 1.08613 * 110.91327 * 315.87377 * 16 14 13 33 33 H 1.10544 * 107.96228 * 72.10613 * 16 14 13 34 34 H 1.09673 * 109.05212 * 168.11729 * 17 16 14 35 35 H 1.09657 * 109.09932 * 285.32436 * 17 16 14 36 36 H 1.09590 * 109.31255 * 50.95381 * 19 18 17 37 37 H 1.09636 * 109.22555 * 168.56827 * 19 18 17 38 38 H 1.10527 * 107.93832 * 193.78107 * 20 19 18 39 39 H 1.08650 * 110.82341 * 77.66501 * 20 19 18 40 40 H 1.10029 * 108.72375 * 284.92110 * 21 20 19 41 41 H 1.09455 * 109.47334 * 168.35765 * 21 20 19 42 42 H 1.08825 * 109.98895 * 183.78688 * 24 18 17 43 43 H 1.08836 * 109.96805 * 305.07003 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9842 -0.8362 5 6 3.5407 1.4447 -0.1369 6 1 4.1526 1.8908 0.6332 7 6 4.1326 0.8823 -1.2481 8 7 3.3872 0.3435 -2.1881 9 14 5.9928 0.8844 -1.4174 10 1 6.5471 -0.3495 -0.8047 11 1 6.3588 0.9304 -2.8559 12 1 6.5514 2.0742 -0.7262 13 7 1.6624 2.0953 1.2606 14 6 1.5042 3.5468 1.0762 15 1 1.1638 3.7183 0.0432 16 6 2.8488 4.2369 1.2639 17 6 2.7157 5.7512 1.3532 18 7 1.6508 6.1667 2.2586 19 6 1.9537 5.9416 3.6678 20 6 1.9575 4.4615 4.0264 21 6 0.7396 3.7290 3.4811 22 6 0.4440 4.0818 2.0303 23 1 -0.5302 3.6514 1.7526 24 6 0.3515 5.6046 1.8810 25 1 -0.3632 0.4192 0.9383 26 1 -0.3633 0.6029 -0.8321 27 1 -0.3633 -1.0222 -0.1059 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8035 -0.0525 -2.9697 31 1 0.8232 1.6857 1.6427 32 1 3.3702 3.8408 2.1305 33 1 3.4781 4.0018 0.3861 34 1 3.6674 6.1746 1.6968 35 1 2.5168 6.1536 0.3527 36 1 2.9346 6.3711 3.9008 37 1 1.2086 6.4583 4.2842 38 1 1.9421 4.3782 5.1284 39 1 2.8771 3.9865 3.6961 40 1 -0.1349 3.9921 4.0949 41 1 0.8879 2.6492 3.5818 42 1 -0.4257 5.9899 2.5382 43 1 0.1235 5.8571 0.8472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382845669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:43 Heat of formation + Delta-G solvation = -9.341727 kcal Electronic energy + Delta-G solvation = -20423.644933 eV Core-core repulsion = 17695.625542 eV Total energy + Delta-G solvation = -2728.019392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16675 -36.22652 -33.22246 -32.71614 -31.62143 -30.51449 -29.14623 -26.52282 -25.13836 -23.34654 -22.58329 -21.52969 -20.82181 -19.50023 -18.02537 -16.25945 -15.58662 -15.03119 -14.90671 -14.63488 -14.30041 -14.17612 -13.47014 -12.99710 -12.79468 -12.60348 -12.50617 -12.23464 -11.83753 -11.74601 -11.42602 -11.20484 -11.07031 -10.95758 -10.83836 -10.77327 -10.61483 -10.35893 -10.01508 -9.80936 -9.64328 -9.60227 -9.21523 -8.97706 -8.31547 -7.76662 -7.18074 -5.94387 -3.97270 3.32674 3.39374 3.42722 4.24603 4.46025 4.91640 4.96603 5.16317 5.28880 5.33406 5.36432 5.49051 5.56617 5.59648 5.72083 5.76901 5.85629 6.01211 6.09466 6.12107 6.14476 6.16374 6.25191 6.28323 6.40431 6.41403 6.46914 6.57533 6.66336 6.82230 6.84091 7.05492 7.10495 7.23554 7.42215 7.53473 7.56351 7.80260 7.95811 8.37411 8.44356 8.80755 9.10411 9.67012 11.11023 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.007537 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.527536 B = 3714.236378 C = 4441.029164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.115 3.885 15 H 0.029 0.971 16 C -0.140 4.140 17 C 0.067 3.933 18 N -0.550 5.550 19 C 0.071 3.929 20 C -0.150 4.150 21 C -0.095 4.095 22 C -0.125 4.125 23 H 0.060 0.940 24 C 0.072 3.928 25 H 0.033 0.967 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.258 0.742 31 H 0.316 0.684 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 8.188 8.742 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.313 5.313 14 C 0.005 3.995 15 H 0.047 0.953 16 C -0.180 4.180 17 C -0.061 4.061 18 N -0.272 5.272 19 C -0.057 4.057 20 C -0.189 4.189 21 C -0.133 4.133 22 C -0.146 4.146 23 H 0.079 0.921 24 C -0.057 4.057 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.847 8.623 8.727 13.191 hybrid contribution 0.234 -1.071 -0.614 1.256 sum -4.613 7.552 8.112 12.005 Atomic orbital electron populations 1.21871 0.99699 0.99630 0.99428 1.21800 0.91144 1.00682 1.02981 1.19245 0.95461 0.89762 0.84254 0.98115 1.21237 0.91282 1.35791 1.04108 0.91968 1.24971 0.97872 0.95882 0.95991 1.69875 1.34553 1.39712 1.09647 0.86597 0.86114 0.78347 0.76914 1.20889 1.21509 1.20012 1.60770 1.37822 1.01113 1.31593 1.21053 0.93228 0.89834 0.95403 0.95281 1.22027 0.98061 0.93632 1.04255 1.21825 0.93527 0.94663 0.96107 1.60236 1.03120 1.61036 1.02804 1.21709 1.01146 0.94409 0.88464 1.21965 0.99921 0.97045 0.99989 1.21059 0.96760 1.01024 0.94420 1.21776 0.98991 0.97750 0.96073 0.92115 1.21939 0.90964 0.91829 1.00935 0.94754 0.93953 0.94460 0.88300 0.94194 0.93193 0.86588 0.91150 0.90647 0.91647 0.91606 0.91583 0.91854 0.93212 0.90672 0.93774 0.91215 0.91211 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.65 37.16 0.36 -2.53 16 2 C -0.13 -2.99 5.34 -26.73 -0.14 -3.13 16 3 C 0.22 5.37 2.03 -68.87 -0.14 5.23 16 4 H 0.00 0.04 7.25 -51.93 -0.38 -0.34 16 5 C -0.49 -13.07 7.50 -34.44 -0.26 -13.33 16 6 H 0.06 1.71 7.17 -52.49 -0.38 1.33 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.48 11.29 55.43 0.63 -24.86 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.02 5.61 -101.07 -0.57 -14.58 16 14 C 0.12 2.12 2.22 -68.27 -0.15 1.96 16 15 H 0.03 0.61 7.28 -51.30 -0.37 0.23 16 16 C -0.14 -2.54 3.99 -27.46 -0.11 -2.65 16 17 C 0.07 1.02 5.76 -4.78 -0.03 0.99 16 18 N -0.55 -7.67 4.79 -236.41 -1.13 -8.80 16 19 C 0.07 0.89 5.77 -4.73 -0.03 0.87 16 20 C -0.15 -2.01 5.15 -27.49 -0.14 -2.16 16 21 C -0.09 -1.32 5.22 -27.53 -0.14 -1.47 16 22 C -0.13 -1.87 2.32 -91.21 -0.21 -2.08 16 23 H 0.06 0.89 8.23 -51.32 -0.42 0.46 16 24 C 0.07 0.97 5.69 -3.88 -0.02 0.95 16 25 H 0.03 0.59 6.66 -51.93 -0.35 0.25 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.32 6.08 5.56 -39.29 -0.22 5.86 16 32 H 0.07 1.34 5.67 -52.15 -0.30 1.04 16 33 H 0.07 1.60 7.02 -51.05 -0.36 1.24 16 34 H 0.07 0.93 8.09 -51.55 -0.42 0.51 16 35 H 0.07 1.00 8.20 -51.56 -0.42 0.57 16 36 H 0.07 0.79 8.09 -51.59 -0.42 0.37 16 37 H 0.06 0.72 8.20 -51.57 -0.42 0.30 16 38 H 0.05 0.59 8.27 -51.05 -0.42 0.17 16 39 H 0.07 1.16 5.68 -52.13 -0.30 0.86 16 40 H 0.04 0.55 8.23 -51.34 -0.42 0.12 16 41 H 0.07 1.06 7.17 -51.67 -0.37 0.69 16 42 H 0.07 0.84 8.12 -52.03 -0.42 0.42 16 43 H 0.07 0.98 8.13 -52.02 -0.42 0.56 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -27.31 310.17 -10.05 -37.35 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.52 Total: 5.74 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.11 Total: -15.98 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.07 Total: -48.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.31 -10.05 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382845669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.012 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds