Wall clock time and date at job start Mon Mar 30 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99893 * 2 1 4 4 H 1.48498 * 109.46726 * 269.99279 * 3 2 1 5 5 H 1.48493 * 109.47440 * 29.99410 * 3 2 1 6 6 H 1.48495 * 109.46977 * 149.99823 * 3 2 1 7 7 C 1.37875 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47111 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47111 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99923 * 179.97438 * 13 12 11 15 15 H 1.08995 * 110.28293 * 35.67376 * 14 13 12 16 16 C 1.54257 * 110.32186 * 273.54747 * 14 13 12 17 17 C 1.54381 * 105.14978 * 240.94885 * 16 14 13 18 18 N 1.48720 * 104.51692 * 336.27274 * 17 16 14 19 19 C 1.46900 * 111.01831 * 158.96284 * 18 17 16 20 20 C 1.52996 * 117.49956 * 128.11236 * 19 18 17 21 21 C 1.53000 * 60.00209 * 252.51326 * 20 19 18 22 22 C 1.48567 * 104.28820 * 39.36098 * 18 17 16 23 23 H 0.97002 * 119.99816 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47456 * 59.99980 * 9 7 2 25 25 H 1.09003 * 109.47279 * 299.99914 * 9 7 2 26 26 H 1.09000 * 109.46699 * 59.99820 * 10 9 7 27 27 H 1.08995 * 109.47147 * 299.99956 * 10 9 7 28 28 H 1.09007 * 109.46984 * 60.00264 * 11 10 9 29 29 H 1.09003 * 109.47504 * 300.00318 * 11 10 9 30 30 H 1.09000 * 109.46699 * 60.00059 * 12 11 10 31 31 H 1.08998 * 109.46668 * 300.00035 * 12 11 10 32 32 H 1.00902 * 110.99929 * 56.04645 * 13 12 11 33 33 H 1.09002 * 110.32715 * 359.89941 * 16 14 13 34 34 H 1.08998 * 110.32251 * 122.00467 * 16 14 13 35 35 H 1.09004 * 110.40867 * 94.98012 * 17 16 14 36 36 H 1.08996 * 110.41187 * 217.42234 * 17 16 14 37 37 H 1.08997 * 115.55324 * 273.82524 * 19 18 17 38 38 H 1.09004 * 117.50062 * 359.97438 * 20 19 18 39 39 H 1.08994 * 117.50102 * 145.02767 * 20 19 18 40 40 H 1.09001 * 117.50061 * 252.51205 * 21 20 19 41 41 H 1.09008 * 117.50146 * 107.48426 * 21 20 19 42 42 H 1.08999 * 110.41133 * 201.79165 * 22 18 17 43 43 H 1.09001 * 110.41003 * 79.35561 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0005 13 7 1.7400 -7.4222 0.0005 14 6 2.6645 -8.5639 -0.0007 15 1 3.5481 -8.3351 0.5949 16 6 3.0700 -8.9233 -1.4449 17 6 2.5808 -10.3727 -1.6526 18 7 2.4993 -10.9389 -0.2799 19 6 1.6028 -12.1021 -0.2421 20 6 2.1438 -13.3910 0.3800 21 6 1.9539 -13.2938 -1.1351 22 6 1.9621 -9.8259 0.5446 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8887 29 1 0.8538 -5.0446 0.8914 30 1 3.1018 -6.0922 0.8901 31 1 3.1005 -6.0923 -0.8899 32 1 1.1032 -7.4721 -0.7806 33 1 2.5818 -8.2537 -2.1531 34 1 4.1527 -8.8692 -1.5587 35 1 1.5983 -10.3782 -2.1247 36 1 3.2960 -10.9327 -2.2549 37 1 0.5465 -11.8770 -0.0956 38 1 3.1650 -13.3760 0.7608 39 1 1.4434 -14.0141 0.9359 40 1 1.1285 -13.8529 -1.5758 41 1 2.8501 -13.2147 -1.7507 42 1 2.2117 -9.9760 1.5950 43 1 0.8826 -9.7452 0.4173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385180242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:02 Heat of formation + Delta-G solvation = 11.087357 kcal Electronic energy + Delta-G solvation = -17956.538145 eV Core-core repulsion = 15229.404625 eV Total energy + Delta-G solvation = -2727.133520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65845 -37.20249 -35.43542 -33.66543 -31.99703 -29.81210 -28.98162 -26.88885 -24.11746 -22.98314 -22.40720 -21.46049 -20.83066 -20.41569 -19.82906 -16.93958 -16.21317 -16.14259 -15.65226 -14.99507 -14.49948 -14.30214 -14.20930 -13.85359 -13.37445 -12.99042 -12.46649 -12.41834 -12.21713 -11.94940 -11.80406 -11.68783 -11.53456 -11.19548 -11.00874 -10.97655 -10.69097 -10.55158 -10.48309 -10.42077 -10.35783 -9.61493 -9.24180 -8.98985 -8.74798 -8.38650 -8.31149 -5.96489 -3.98647 3.33597 3.39627 3.40443 3.43289 3.51976 4.24420 4.40720 4.48579 4.53044 4.61448 4.72340 4.78979 5.01147 5.13734 5.26875 5.28432 5.33072 5.38898 5.44094 5.51270 5.54430 5.59823 5.62009 5.76342 5.79069 5.85379 5.90447 5.94295 6.17752 6.24078 6.46926 6.53396 6.79795 6.84190 6.98157 7.07151 7.24812 7.39746 7.72582 7.88492 8.04709 8.47554 9.08916 9.65111 11.14865 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.075056 B = 0.002580 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.963335 B =10851.298893 C =10948.541360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.060 3.940 13 N -0.684 5.684 14 C 0.084 3.916 15 H 0.088 0.912 16 C -0.156 4.156 17 C 0.039 3.961 18 N -0.487 5.487 19 C -0.006 4.006 20 C -0.162 4.162 21 C -0.176 4.176 22 C 0.047 3.953 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.339 0.661 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -25.371 -2.179 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.028 4.028 15 H 0.106 0.894 16 C -0.196 4.196 17 C -0.089 4.089 18 N -0.211 5.211 19 C -0.115 4.115 20 C -0.199 4.199 21 C -0.214 4.214 22 C -0.081 4.081 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.334 -25.435 -1.288 25.834 hybrid contribution -0.076 1.234 -1.275 1.776 sum 4.257 -24.201 -2.563 24.706 Atomic orbital electron populations 1.69972 1.06044 1.26504 1.51064 1.25041 0.94858 0.99248 0.95453 0.86604 0.79860 0.83548 0.78049 1.20719 1.21233 1.19898 1.21291 0.93017 0.91217 1.50267 0.92771 1.19095 0.94035 0.91365 0.97135 1.21585 0.99072 0.93942 1.00082 1.21645 0.97888 0.93902 1.01942 1.22092 0.96238 0.88293 1.00200 1.60554 1.19306 1.01618 1.49983 1.22297 0.95248 0.90596 0.94612 0.89410 1.23103 1.02230 0.96093 0.98194 1.23020 1.00120 0.94794 0.90947 1.65234 1.43873 1.04368 1.07642 1.22637 0.95117 0.87388 1.06386 1.23029 1.02935 0.98769 0.95196 1.23036 1.03473 1.00883 0.93998 1.23096 0.97966 0.88765 0.98239 0.93061 0.96781 0.96598 0.93422 0.93695 0.92841 0.91651 0.91184 0.95457 0.84217 0.91075 0.90841 0.93674 0.90392 0.89073 0.88158 0.88789 0.88760 0.88470 0.89733 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -1.98 5.47 -26.73 -0.15 -2.13 16 12 C 0.06 0.85 5.52 -3.82 -0.02 0.83 16 13 N -0.68 -8.40 6.24 -105.27 -0.66 -9.06 16 14 C 0.08 0.90 3.36 -66.33 -0.22 0.67 16 15 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 16 C -0.16 -1.50 6.57 -25.35 -0.17 -1.66 16 17 C 0.04 0.35 6.05 -2.09 -0.01 0.34 16 18 N -0.49 -4.72 5.54 -221.88 -1.23 -5.95 16 19 C -0.01 -0.05 5.21 -67.71 -0.35 -0.40 16 20 C -0.16 -1.21 10.46 -26.73 -0.28 -1.48 16 21 C -0.18 -1.27 9.94 -26.73 -0.27 -1.53 16 22 C 0.05 0.49 6.21 -2.18 -0.01 0.47 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 32 H 0.34 3.96 8.22 -39.29 -0.32 3.64 16 33 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 36 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 37 H 0.09 0.78 7.82 -51.93 -0.41 0.37 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.71 8.04 -51.92 -0.42 0.30 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -30.12 344.55 -11.36 -41.48 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.22 Total: -1.17 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.17 Total: -20.75 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -1.15 Total: -41.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.12 -11.36 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385180242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.571 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds