Wall clock time and date at job start Mon Mar 30 2020 03:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99773 * 2 1 4 4 H 1.48499 * 109.47427 * 270.00140 * 3 2 1 5 5 H 1.48510 * 109.47299 * 29.99942 * 3 2 1 6 6 H 1.48499 * 109.47333 * 150.00012 * 3 2 1 7 7 C 1.37871 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00172 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00374 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47410 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47197 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47290 * 180.02562 * 12 11 10 14 14 C 1.46508 * 110.96460 * 317.77601 * 13 12 11 15 15 C 1.53924 * 111.87771 * 179.00272 * 14 13 12 16 16 C 1.51441 * 106.84170 * 55.92901 * 15 14 13 17 17 H 1.09008 * 109.87567 * 55.87010 * 16 15 14 18 18 C 1.52208 * 117.91633 * 183.30335 * 16 15 14 19 19 N 1.48728 * 105.74549 * 145.47888 * 18 16 15 20 20 C 1.49150 * 108.27477 * 356.47792 * 19 18 16 21 21 C 1.52934 * 103.31035 * 335.58763 * 20 19 18 22 22 H 1.08995 * 111.20763 * 284.57092 * 21 20 19 23 23 C 1.47756 * 110.99765 * 190.00177 * 13 12 11 24 24 H 0.96996 * 120.00313 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46875 * 60.00317 * 9 7 2 26 26 H 1.09002 * 109.47592 * 300.00801 * 9 7 2 27 27 H 1.09001 * 109.47078 * 60.00153 * 10 9 7 28 28 H 1.08998 * 109.46819 * 300.00102 * 10 9 7 29 29 H 1.08999 * 109.46854 * 60.00528 * 11 10 9 30 30 H 1.08992 * 109.47065 * 300.00421 * 11 10 9 31 31 H 1.09001 * 109.47078 * 60.00037 * 12 11 10 32 32 H 1.09007 * 109.46991 * 300.00217 * 12 11 10 33 33 H 1.09002 * 109.11047 * 58.33659 * 14 13 12 34 34 H 1.08998 * 108.95755 * 299.56642 * 14 13 12 35 35 H 1.09002 * 109.99556 * 296.56864 * 15 14 13 36 36 H 1.08998 * 109.98909 * 175.28853 * 15 14 13 37 37 H 1.08998 * 110.19467 * 264.54658 * 18 16 15 38 38 H 1.08994 * 110.19400 * 26.41200 * 18 16 15 39 39 H 1.00897 * 110.99917 * 234.39921 * 19 18 16 40 40 H 1.09003 * 110.64916 * 217.13747 * 20 19 18 41 41 H 1.09000 * 110.65431 * 94.04609 * 20 19 18 42 42 H 1.09002 * 109.97928 * 65.57107 * 23 13 12 43 43 H 1.08998 * 109.97982 * 304.22505 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 7 1.7403 -7.4222 -0.0031 14 6 0.6005 -7.3704 0.9160 15 6 -0.1991 -8.6857 0.9129 16 6 0.7778 -9.7939 1.2462 17 1 1.2733 -9.5788 2.1930 18 6 0.2618 -11.2258 1.2353 19 7 1.3927 -12.0585 0.7457 20 6 2.5216 -11.1513 0.3893 21 6 1.8253 -9.8221 0.0939 22 1 1.3283 -9.8444 -0.8759 23 6 2.6520 -8.5601 0.2359 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8720 -3.6043 0.8895 28 1 2.8720 -3.6042 -0.8905 29 1 0.8542 -5.0446 -0.8914 30 1 0.8535 -5.0451 0.8885 31 1 3.1014 -6.0927 0.8882 32 1 3.1013 -6.0917 -0.8919 33 1 -0.0588 -6.5540 0.6213 34 1 0.9674 -7.1811 1.9248 35 1 -0.6334 -8.8555 -0.0724 36 1 -0.9869 -8.6446 1.6650 37 1 -0.0219 -11.5312 2.2424 38 1 -0.5897 -11.3137 0.5607 39 1 1.1138 -12.6173 -0.0467 40 1 3.0438 -11.5165 -0.4950 41 1 3.2101 -11.0465 1.2279 42 1 3.0685 -8.4989 1.2413 43 1 3.4544 -8.5557 -0.5018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385206755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:12 Heat of formation + Delta-G solvation = -32.820635 kcal Electronic energy + Delta-G solvation = -18694.870409 eV Core-core repulsion = 15965.832895 eV Total energy + Delta-G solvation = -2729.037514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16402 -38.29832 -36.19866 -34.45765 -33.17746 -31.93152 -29.67617 -28.80551 -26.56578 -24.55914 -24.13949 -22.22392 -21.90115 -21.15934 -20.86857 -18.42956 -17.19668 -16.75591 -16.58212 -16.41973 -16.10422 -15.74274 -15.36981 -14.70276 -14.44811 -14.22898 -14.02855 -13.72081 -13.64412 -13.43860 -13.03419 -12.96495 -12.79749 -12.53348 -12.30179 -12.24695 -12.07073 -11.97452 -11.65992 -11.61555 -11.36927 -11.20110 -10.99030 -10.96028 -10.56623 -9.46668 -9.21669 -8.21155 -6.32748 1.38746 1.40460 1.51577 2.39887 2.79204 3.11584 3.23634 3.39691 3.66713 3.87506 4.07600 4.10072 4.14541 4.32327 4.39064 4.44410 4.48361 4.50303 4.57897 4.61411 4.71964 4.76015 4.81148 4.83148 4.87977 4.94854 4.97741 5.05261 5.14052 5.17530 5.21184 5.26372 5.30804 5.43038 5.52636 5.74292 5.75531 5.85086 6.09149 6.20411 6.25457 6.46603 6.84682 7.36692 8.90803 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.062612 B = 0.003165 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.087811 B = 8843.808915 C = 9168.054901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.097 4.097 11 C -0.109 4.109 12 C 0.071 3.929 13 N -0.558 5.558 14 C 0.056 3.944 15 C -0.097 4.097 16 C -0.112 4.112 17 H 0.064 0.936 18 C 0.058 3.942 19 N -0.694 5.694 20 C 0.060 3.940 21 C -0.116 4.116 22 H 0.080 0.920 23 C 0.076 3.924 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.012 1.012 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.347 0.653 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -23.458 0.943 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.135 4.135 11 C -0.147 4.147 12 C -0.057 4.057 13 N -0.284 5.284 14 C -0.072 4.072 15 C -0.135 4.135 16 C -0.132 4.132 17 H 0.082 0.918 18 C -0.071 4.071 19 N -0.322 5.322 20 C -0.069 4.069 21 C -0.136 4.136 22 H 0.098 0.902 23 C -0.051 4.051 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.163 0.837 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.040 -23.629 1.168 23.852 hybrid contribution 0.028 1.814 0.023 1.814 sum 3.068 -21.815 1.191 22.062 Atomic orbital electron populations 1.70102 1.07853 1.27797 1.51736 1.26021 0.95808 1.03489 0.94709 0.85430 0.78647 0.78299 0.78571 1.19658 1.20657 1.18712 1.21744 0.93573 0.92528 1.50488 0.92204 1.19006 0.94463 0.93263 0.94559 1.21406 0.97994 0.93626 1.00466 1.21655 0.98142 0.93513 1.01415 1.21995 0.95308 0.87532 1.00819 1.61235 1.10552 1.03050 1.53521 1.22148 0.92859 0.98825 0.93376 1.21346 0.97189 0.92540 1.02396 1.22030 0.97524 0.95153 0.98451 0.91800 1.22261 0.93196 0.90384 1.01211 1.62500 1.07424 1.23426 1.38878 1.22563 0.93730 0.89704 1.00910 1.22469 0.97423 0.94645 0.99061 0.90212 1.21773 0.94456 0.89133 0.99758 0.92748 0.99214 0.99331 0.93297 0.92885 0.92485 0.92681 0.94987 0.90258 0.91010 0.96108 0.91081 0.90166 0.90610 0.91901 0.83723 0.89723 0.90825 0.94903 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -4.06 5.15 30.59 0.16 -3.90 16 11 C -0.11 -3.79 4.29 30.59 0.13 -3.66 16 12 C 0.07 1.99 5.35 86.30 0.46 2.45 16 13 N -0.56 -14.03 4.69 -895.96 -4.21 -18.24 16 14 C 0.06 1.37 4.56 86.69 0.40 1.77 16 15 C -0.10 -1.87 5.85 30.40 0.18 -1.69 16 16 C -0.11 -1.98 2.33 -10.61 -0.02 -2.01 16 17 H 0.06 1.28 7.95 -2.38 -0.02 1.26 16 18 C 0.06 0.88 7.31 85.69 0.63 1.51 16 19 N -0.69 -10.39 7.48 -505.46 -3.78 -14.17 16 20 C 0.06 0.88 7.24 85.84 0.62 1.50 16 21 C -0.12 -2.01 2.61 -10.35 -0.03 -2.03 16 22 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 23 C 0.08 1.55 5.28 85.66 0.45 2.00 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.93 6.34 -2.39 -0.02 1.92 16 31 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.07 1.98 6.09 -2.39 -0.01 1.96 16 34 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 39 H 0.35 4.08 8.93 -89.70 -0.80 3.28 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.03 0.69 7.99 -2.39 -0.02 0.67 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -64.68 329.17 -1.71 -66.39 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.15 Total: 10.73 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.82 Total: -33.90 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -7.70 Total: -90.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.68 -1.71 -66.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.568 kcal (2) G-P(sol) polarization free energy of solvation -64.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds