Wall clock time and date at job start Mon Mar 30 2020 03:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47176 * 240.00257 * 3 2 1 5 5 H 1.48502 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47127 * 120.00116 * 3 2 1 7 7 C 1.37881 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47001 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.47156 * 110.99845 * 293.94790 * 13 12 11 15 15 C 1.52330 * 108.42216 * 168.62968 * 14 13 12 16 16 C 1.51843 * 112.14743 * 58.14041 * 15 14 13 17 17 H 1.09003 * 109.84266 * 86.30119 * 16 15 14 18 18 C 1.54957 * 108.04804 * 206.50029 * 16 15 14 19 19 N 1.47809 * 105.15494 * 92.88795 * 18 16 15 20 20 C 1.47594 * 107.54923 * 30.14992 * 19 18 16 21 21 C 1.51656 * 114.72166 * 321.98985 * 16 15 14 22 22 H 1.09001 * 106.58711 * 146.75587 * 21 16 15 23 23 C 1.46302 * 110.99595 * 171.65607 * 13 12 11 24 24 H 0.96993 * 120.00564 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47111 * 60.00477 * 9 7 2 26 26 H 1.08993 * 109.47465 * 299.99896 * 9 7 2 27 27 H 1.09007 * 109.46451 * 60.00291 * 10 9 7 28 28 H 1.08993 * 109.47353 * 300.00433 * 10 9 7 29 29 H 1.08997 * 109.46858 * 60.00435 * 11 10 9 30 30 H 1.09007 * 109.47574 * 300.00354 * 11 10 9 31 31 H 1.08997 * 109.47518 * 60.00154 * 12 11 10 32 32 H 1.09001 * 109.47105 * 300.00112 * 12 11 10 33 33 H 1.09001 * 109.67798 * 48.90069 * 14 13 12 34 34 H 1.08999 * 109.67520 * 288.36380 * 14 13 12 35 35 H 1.09000 * 108.94660 * 297.45815 * 15 14 13 36 36 H 1.08999 * 108.88131 * 178.78300 * 15 14 13 37 37 H 1.08993 * 110.31015 * 211.78330 * 18 16 15 38 38 H 1.08996 * 110.31048 * 333.85721 * 18 16 15 39 39 H 1.00898 * 110.99912 * 268.54940 * 19 18 16 40 40 H 1.09002 * 109.95989 * 221.79822 * 20 19 18 41 41 H 1.08999 * 109.96298 * 100.59327 * 20 19 18 42 42 H 1.08999 * 108.78598 * 59.81840 * 23 13 12 43 43 H 1.09000 * 108.78808 * 301.62066 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7401 -7.4222 -0.0018 14 6 0.9940 -7.6003 1.2540 15 6 0.0412 -8.7769 1.0852 16 6 0.7720 -10.0580 0.7243 17 1 1.1072 -10.5609 1.6315 18 6 -0.2095 -10.9664 -0.0584 19 7 0.0269 -10.6531 -1.4835 20 6 1.4416 -10.2561 -1.6231 21 6 1.9404 -9.8758 -0.2253 22 1 2.6842 -10.6237 0.0494 23 6 2.6483 -8.5519 -0.2006 24 1 -0.4850 0.8399 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8726 -3.6046 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 0.8528 -5.0447 -0.8905 30 1 0.8546 -5.0450 0.8895 31 1 3.1019 -6.0923 0.8877 32 1 3.1006 -6.0923 -0.8923 33 1 0.4257 -6.6967 1.4746 34 1 1.6893 -7.8050 2.0681 35 1 -0.6736 -8.5430 0.2962 36 1 -0.5001 -8.9292 2.0189 37 1 0.0076 -12.0161 0.1387 38 1 -1.2389 -10.7356 0.2156 39 1 -0.5878 -9.9177 -1.7988 40 1 1.5235 -9.4002 -2.2931 41 1 2.0254 -11.0902 -2.0123 42 1 3.3800 -8.5603 0.6071 43 1 3.1741 -8.4174 -1.1459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385206757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:15 Heat of formation + Delta-G solvation = -20.047262 kcal Electronic energy + Delta-G solvation = -18824.821893 eV Core-core repulsion = 16096.338275 eV Total energy + Delta-G solvation = -2728.483619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33884 -37.15875 -34.49717 -32.73937 -32.27822 -30.94287 -28.54069 -27.63286 -24.99751 -23.65286 -22.84175 -21.57782 -20.89438 -19.97753 -18.69707 -16.52813 -16.21404 -16.16587 -15.44078 -15.35650 -14.52970 -14.41515 -14.22255 -13.74807 -13.38153 -12.91790 -12.60678 -12.43306 -12.27203 -12.05914 -11.69950 -11.64587 -11.52497 -11.10241 -11.02218 -10.88168 -10.63168 -10.57701 -10.46200 -10.38967 -10.14837 -9.59059 -9.24583 -9.00604 -8.72802 -8.32218 -8.29343 -5.96922 -3.99250 3.34517 3.38733 3.41262 3.85284 4.09791 4.33997 4.40469 4.48249 4.71521 4.91458 5.07195 5.17728 5.26254 5.28348 5.33188 5.38335 5.40850 5.42618 5.51280 5.65474 5.70395 5.75466 5.79713 5.82978 5.90825 5.94754 6.01771 6.14704 6.21323 6.27114 6.52557 6.64859 6.82282 6.97623 7.09387 7.11261 7.18599 7.26440 7.71562 7.87764 8.04067 8.46878 9.08053 9.64472 11.14404 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.048013 B = 0.003329 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.034771 B = 8408.764842 C = 8551.215592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.055 3.945 13 N -0.529 5.529 14 C 0.047 3.953 15 C -0.106 4.106 16 C -0.108 4.108 17 H 0.073 0.927 18 C 0.051 3.949 19 N -0.679 5.679 20 C 0.056 3.944 21 C -0.102 4.102 22 H 0.062 0.938 23 C 0.066 3.934 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.341 0.659 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -21.916 1.008 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.072 4.072 13 N -0.253 5.253 14 C -0.080 4.080 15 C -0.144 4.144 16 C -0.129 4.129 17 H 0.091 0.909 18 C -0.079 4.079 19 N -0.306 5.306 20 C -0.073 4.073 21 C -0.123 4.123 22 H 0.081 0.919 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.156 0.844 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.602 -22.495 0.362 22.555 hybrid contribution 1.155 1.822 1.184 2.460 sum 2.756 -20.673 1.546 20.913 Atomic orbital electron populations 1.69955 1.06041 1.26639 1.50928 1.25032 0.94848 0.99213 0.95412 0.86670 0.79592 0.83217 0.78584 1.20248 1.21290 1.20299 1.21257 0.92975 0.91245 1.50475 0.92842 1.19076 0.94001 0.91307 0.97118 1.21601 0.99103 0.94017 1.00030 1.21665 0.97829 0.93549 1.01977 1.22248 0.96011 0.88538 1.00410 1.62335 1.26763 1.01763 1.34472 1.22107 0.96654 0.99005 0.90274 1.21226 0.98144 0.93449 1.01595 1.21711 0.95546 0.97047 0.98565 0.90901 1.23052 0.98638 0.99083 0.87116 1.62018 1.04863 1.45202 1.18527 1.22598 0.89245 0.99656 0.95835 1.20995 0.97784 0.96982 0.96512 0.91926 1.21358 0.93775 0.90086 1.01047 0.92989 0.96620 0.96783 0.93744 0.93461 0.91704 0.92617 0.95183 0.91019 0.89683 0.95051 0.91425 0.91753 0.90965 0.91040 0.84366 0.91206 0.91097 0.95502 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.93 5.17 -26.73 -0.14 -2.07 16 12 C 0.06 0.79 4.94 -3.82 -0.02 0.77 16 13 N -0.53 -6.74 4.74 -237.12 -1.12 -7.86 16 14 C 0.05 0.57 5.38 -4.03 -0.02 0.55 16 15 C -0.11 -1.06 5.30 -27.66 -0.15 -1.21 16 16 C -0.11 -0.99 3.26 -90.86 -0.30 -1.28 16 17 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 18 C 0.05 0.44 6.85 -2.29 -0.02 0.42 16 19 N -0.68 -6.59 7.44 -111.32 -0.83 -7.42 16 20 C 0.06 0.54 7.18 -3.33 -0.02 0.51 16 21 C -0.10 -0.98 2.68 -92.61 -0.25 -1.22 16 22 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 23 C 0.07 0.71 4.71 -5.57 -0.03 0.69 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 31 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.08 1.11 6.07 -51.93 -0.32 0.79 16 34 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 35 H 0.07 0.73 7.74 -51.93 -0.40 0.33 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.57 7.75 -51.93 -0.40 0.16 16 39 H 0.34 3.25 8.91 -39.29 -0.35 2.90 16 40 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.29 8.13 -51.93 -0.42 -0.13 16 43 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -30.09 328.52 -10.96 -41.04 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.05 Total: -2.33 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.62 Total: -18.66 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -1.22 Total: -41.91 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.09 -10.96 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385206757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.996 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds