Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.48651 * 111.00012 * 69.87831 * 13 12 11 15 15 C 1.54626 * 104.63227 * 158.52369 * 14 13 12 16 16 C 1.53265 * 104.68155 * 336.30173 * 15 14 13 17 17 C 1.53268 * 111.25897 * 239.20464 * 16 15 14 18 18 C 1.54634 * 104.68011 * 238.68584 * 17 16 15 19 19 N 1.48641 * 104.63543 * 23.69152 * 18 17 16 20 20 C 1.48797 * 104.38144 * 321.13066 * 19 18 17 21 21 C 1.48805 * 111.00125 * 185.48769 * 13 12 11 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 26 26 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 27 27 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 28 28 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 29 29 H 1.08998 * 109.47844 * 299.99997 * 12 11 10 30 30 H 1.09001 * 109.47248 * 60.00689 * 12 11 10 31 31 H 1.09003 * 110.40418 * 277.31391 * 14 13 12 32 32 H 1.09003 * 110.40672 * 39.73192 * 14 13 12 33 33 H 1.09002 * 110.39755 * 95.10360 * 15 14 13 34 34 H 1.09006 * 110.39460 * 217.49935 * 15 14 13 35 35 H 1.09001 * 110.38978 * 357.48139 * 17 16 15 36 36 H 1.08994 * 110.39677 * 119.87946 * 17 16 15 37 37 H 1.09002 * 110.40438 * 142.48266 * 18 17 16 38 38 H 1.08998 * 110.40313 * 264.89813 * 18 17 16 39 39 H 1.00900 * 110.99959 * 80.78413 * 19 18 17 40 40 H 1.09000 * 110.45447 * 279.83107 * 20 19 18 41 41 H 1.09006 * 110.45414 * 157.27280 * 20 19 18 42 42 H 1.09004 * 110.45021 * 320.50992 * 21 13 12 43 43 H 1.08997 * 110.45509 * 83.06747 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4744 -6.1500 -0.0024 13 7 1.7399 -7.4222 -0.0035 14 6 1.0606 -7.6440 -1.3070 15 6 0.8261 -9.1710 -1.3705 16 6 1.8842 -9.7657 -0.4347 17 6 2.8061 -10.7351 -1.1828 18 6 2.6465 -12.0810 -0.4383 19 7 1.3176 -11.9900 0.2214 20 6 1.2336 -10.5804 0.6905 21 6 2.6708 -8.5756 0.1289 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.8725 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 0.8532 -5.0450 0.8876 28 1 0.8540 -5.0446 -0.8922 29 1 3.1012 -6.0920 -0.8923 30 1 3.1010 -6.0927 0.8877 31 1 0.1096 -7.1119 -1.3353 32 1 1.7010 -7.3233 -2.1287 33 1 -0.1751 -9.4167 -1.0166 34 1 0.9705 -9.5356 -2.3876 35 1 2.4894 -10.8354 -2.2210 36 1 3.8395 -10.3926 -1.1313 37 1 2.6639 -12.9106 -1.1451 38 1 3.4334 -12.1988 0.3066 39 1 0.5757 -12.1994 -0.4295 40 1 1.7873 -10.4549 1.6210 41 1 0.1929 -10.2842 0.8225 42 1 3.5745 -8.4048 -0.4561 43 1 2.9203 -8.7453 1.1763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385335485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = -15.079459 kcal Electronic energy + Delta-G solvation = -18573.870555 eV Core-core repulsion = 15845.602357 eV Total energy + Delta-G solvation = -2728.268198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41927 -37.27085 -34.68624 -32.73410 -31.14610 -29.78919 -29.14968 -28.04739 -24.95723 -23.60536 -22.42723 -22.02508 -20.65464 -20.02922 -19.14078 -16.70647 -16.19464 -15.85070 -15.39476 -14.95531 -14.69921 -14.42299 -14.30656 -13.69876 -13.12668 -13.01642 -12.56317 -12.45482 -12.20026 -12.03728 -11.72369 -11.55151 -11.41474 -11.23355 -11.00652 -10.91000 -10.89153 -10.72868 -10.47828 -10.44918 -10.32285 -9.59884 -9.24054 -9.00624 -8.94496 -8.43322 -8.30927 -5.96244 -3.98553 3.34913 3.39055 3.41629 3.88571 3.96119 4.23346 4.40840 4.49131 4.55536 4.85819 4.88756 5.02830 5.13975 5.23702 5.35326 5.39164 5.40668 5.47657 5.52986 5.55404 5.62461 5.65506 5.73193 5.81396 5.87831 5.92196 5.95524 5.98126 6.15245 6.26176 6.37990 6.52253 6.80585 6.91141 6.99115 7.01686 7.07477 7.25384 7.72493 7.88912 8.04951 8.47683 9.08778 9.65136 11.15106 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.066622 B = 0.003019 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.177724 B = 9271.047019 C = 9396.796474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.111 4.111 12 C 0.046 3.954 13 N -0.510 5.510 14 C 0.032 3.968 15 C -0.113 4.113 16 C -0.099 4.099 17 C -0.147 4.147 18 C 0.040 3.960 19 N -0.673 5.673 20 C 0.059 3.941 21 C 0.047 3.953 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.335 0.665 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -23.574 -2.612 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.082 4.082 13 N -0.233 5.233 14 C -0.096 4.096 15 C -0.151 4.151 16 C -0.101 4.101 17 C -0.186 4.186 18 C -0.090 4.090 19 N -0.299 5.299 20 C -0.070 4.070 21 C -0.081 4.081 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.556 -23.762 -1.495 24.073 hybrid contribution 0.994 1.627 -1.621 2.502 sum 4.550 -22.134 -3.115 22.811 Atomic orbital electron populations 1.69964 1.06043 1.26620 1.50958 1.25033 0.94850 0.99212 0.95426 0.86670 0.79590 0.83220 0.78579 1.20300 1.21286 1.20251 1.21258 0.92971 0.91251 1.50436 0.92848 1.19078 0.94003 0.91297 0.97125 1.21603 0.99097 0.94067 0.99990 1.21607 0.97781 0.93493 1.02008 1.22404 0.96160 0.89204 1.00452 1.65484 1.25509 1.01725 1.30608 1.23179 1.00087 0.95450 0.90838 1.22453 0.98726 0.95282 0.98612 1.21986 0.95860 0.95778 0.96450 1.23006 1.00188 0.95916 0.99490 1.23065 0.92718 0.96254 0.96986 1.63334 1.03942 1.23583 1.39000 1.23040 1.01204 0.85827 0.96968 1.23109 0.94069 0.89926 1.01028 0.92993 0.96609 0.96785 0.93781 0.93476 0.91681 0.92753 0.95025 0.90997 0.89797 0.93910 0.90901 0.91488 0.91333 0.90919 0.91059 0.90339 0.84987 0.90050 0.90334 0.93923 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 12 C 0.05 0.67 4.81 -3.82 -0.02 0.65 16 13 N -0.51 -6.67 5.37 -230.15 -1.24 -7.91 16 14 C 0.03 0.39 5.76 -2.00 -0.01 0.38 16 15 C -0.11 -1.06 6.32 -25.74 -0.16 -1.22 16 16 C -0.10 -0.89 0.96 -153.83 -0.15 -1.04 16 17 C -0.15 -1.12 6.31 -25.73 -0.16 -1.29 16 18 C 0.04 0.29 7.49 -2.00 -0.01 0.27 16 19 N -0.67 -5.60 7.63 -109.83 -0.84 -6.44 16 20 C 0.06 0.53 6.59 -2.57 -0.02 0.52 16 21 C 0.05 0.51 5.58 -2.57 -0.01 0.49 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.97 7.27 -51.93 -0.38 0.59 16 29 H 0.03 0.46 7.88 -51.93 -0.41 0.05 16 30 H 0.07 1.04 8.13 -51.93 -0.42 0.61 16 31 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 32 H 0.04 0.52 7.81 -51.93 -0.41 0.12 16 33 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 34 H 0.07 0.56 7.19 -51.93 -0.37 0.19 16 35 H 0.07 0.50 7.18 -51.93 -0.37 0.13 16 36 H 0.07 0.56 7.41 -51.93 -0.38 0.17 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.34 2.41 8.93 -39.29 -0.35 2.06 16 40 H 0.08 0.78 7.46 -51.93 -0.39 0.40 16 41 H 0.08 0.73 7.39 -51.93 -0.38 0.35 16 42 H 0.04 0.46 7.39 -51.93 -0.38 0.08 16 43 H 0.08 0.87 7.43 -51.93 -0.39 0.48 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -30.52 330.52 -10.67 -41.19 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.92 Total: -2.78 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.38 Total: -19.26 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -1.34 Total: -41.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.52 -10.67 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385335485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.113 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds