Wall clock time and date at job start Mon Mar 30 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99371 * 2 1 4 4 H 1.48504 * 109.46768 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47116 * 299.99590 * 3 2 1 6 6 H 1.48502 * 109.47539 * 60.00130 * 3 2 1 7 7 C 1.37874 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99637 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46931 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47251 * 180.02562 * 12 11 10 14 14 C 1.47111 * 110.99601 * 293.95273 * 13 12 11 15 15 C 1.52919 * 108.46613 * 171.60937 * 14 13 12 16 16 C 1.51501 * 110.81665 * 58.65329 * 15 14 13 17 17 H 1.08995 * 109.07950 * 187.37209 * 16 15 14 18 18 N 1.47028 * 112.47469 * 67.18468 * 16 15 14 19 19 C 1.47761 * 107.95802 * 211.88410 * 18 16 15 20 20 C 1.54564 * 107.10774 * 1.18822 * 19 18 16 21 21 C 1.54122 * 112.26262 * 308.28300 * 16 15 14 22 22 H 1.08994 * 112.60646 * 282.50167 * 21 16 15 23 23 C 1.46530 * 111.00147 * 170.83988 * 13 12 11 24 24 H 0.96996 * 120.00289 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46922 * 59.99779 * 9 7 2 26 26 H 1.09000 * 109.47116 * 299.99727 * 9 7 2 27 27 H 1.09000 * 109.47009 * 60.00347 * 10 9 7 28 28 H 1.09000 * 109.47350 * 300.00100 * 10 9 7 29 29 H 1.09000 * 109.47013 * 60.00280 * 11 10 9 30 30 H 1.09000 * 109.47093 * 300.00187 * 11 10 9 31 31 H 1.09000 * 109.47381 * 60.00093 * 12 11 10 32 32 H 1.09000 * 109.47047 * 299.99802 * 12 11 10 33 33 H 1.09004 * 109.63749 * 51.91756 * 14 13 12 34 34 H 1.08995 * 109.80504 * 291.40509 * 14 13 12 35 35 H 1.09002 * 109.20137 * 178.98631 * 15 14 13 36 36 H 1.09002 * 109.20044 * 298.32486 * 15 14 13 37 37 H 1.00904 * 111.00132 * 333.75363 * 18 16 15 38 38 H 1.09002 * 109.90069 * 120.64540 * 19 18 16 39 39 H 1.09002 * 109.90497 * 241.70588 * 19 18 16 40 40 H 1.09000 * 110.84057 * 264.49350 * 20 19 18 41 41 H 1.08998 * 110.67915 * 141.13051 * 20 19 18 42 42 H 1.09004 * 109.22674 * 307.33715 * 23 13 12 43 43 H 1.08993 * 109.23065 * 66.70046 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 6 2.4748 -6.1499 0.0005 13 7 1.7405 -7.4222 -0.0007 14 6 0.9927 -7.6004 1.2536 15 6 0.0906 -8.8268 1.1097 16 6 0.9091 -10.0641 0.8023 17 1 0.2349 -10.8902 0.5765 18 7 1.7684 -10.4631 1.9266 19 6 2.9899 -11.0804 1.3696 20 6 2.8676 -11.0215 -0.1701 21 6 1.8609 -9.8529 -0.3914 22 1 1.3466 -9.9021 -1.3511 23 6 2.6478 -8.5521 -0.2179 24 1 -0.4850 0.8400 0.0004 25 1 0.6249 -2.5570 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.8542 -5.0446 -0.8904 30 1 0.8536 -5.0451 0.8896 31 1 3.1009 -6.0922 0.8910 32 1 3.1021 -6.0921 -0.8890 33 1 0.3828 -6.7175 1.4451 34 1 1.6876 -7.7517 2.0795 35 1 -0.4563 -8.9806 2.0399 36 1 -0.6194 -8.6565 0.3004 37 1 1.9965 -9.6697 2.5068 38 1 3.8686 -10.5236 1.6951 39 1 3.0649 -12.1170 1.6983 40 1 2.4671 -11.9559 -0.5633 41 1 3.8315 -10.7919 -0.6242 42 1 3.2408 -8.3691 -1.1141 43 1 3.3141 -8.6473 0.6393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385339869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:48 Heat of formation + Delta-G solvation = -39.068965 kcal Electronic energy + Delta-G solvation = -18862.019609 eV Core-core repulsion = 16132.711147 eV Total energy + Delta-G solvation = -2729.308461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33135 -38.04464 -36.10034 -34.30344 -33.35629 -31.75067 -29.79094 -28.86343 -26.76042 -24.57391 -24.24003 -22.55797 -21.87690 -21.27209 -19.88261 -18.43242 -17.45376 -16.75803 -16.63299 -16.51918 -16.28103 -15.59623 -15.39906 -14.70836 -14.53094 -14.21583 -13.94757 -13.64512 -13.40636 -13.24707 -13.05868 -12.89437 -12.79209 -12.49111 -12.33227 -12.21012 -12.12643 -11.99371 -11.75911 -11.52743 -11.37998 -11.28283 -11.15605 -10.89120 -10.56531 -9.49743 -9.26004 -8.20527 -6.32077 1.39147 1.39580 1.53076 2.40288 2.84554 3.12190 3.24372 3.66578 3.74897 3.84664 3.98523 4.07082 4.17714 4.26572 4.34244 4.36772 4.45442 4.46787 4.50673 4.57471 4.66616 4.76171 4.80880 4.85769 4.92148 5.00307 5.07418 5.09665 5.13987 5.21155 5.25794 5.27239 5.31966 5.35707 5.54473 5.76751 5.86193 5.93626 6.08456 6.13961 6.25520 6.38396 6.85679 7.37364 8.91571 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.054242 B = 0.003289 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.085476 B = 8511.292424 C = 8721.439558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.097 4.097 11 C -0.102 4.102 12 C 0.066 3.934 13 N -0.542 5.542 14 C 0.047 3.953 15 C -0.111 4.111 16 C 0.084 3.916 17 H 0.079 0.921 18 N -0.683 5.683 19 C 0.042 3.958 20 C -0.132 4.132 21 C -0.109 4.109 22 H 0.095 0.905 23 C 0.061 3.939 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.334 0.666 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 -23.112 1.200 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.135 4.135 11 C -0.139 4.139 12 C -0.061 4.061 13 N -0.266 5.266 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.026 4.026 17 H 0.098 0.902 18 N -0.313 5.313 19 C -0.087 4.087 20 C -0.170 4.170 21 C -0.130 4.130 22 H 0.114 0.886 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.781 -23.626 0.976 24.125 hybrid contribution 1.073 1.943 0.325 2.244 sum 5.855 -21.683 1.301 22.497 Atomic orbital electron populations 1.70112 1.07846 1.27714 1.51799 1.26026 0.95807 1.03489 0.94743 0.85379 0.79067 0.78645 0.77834 1.18530 1.20302 1.20293 1.21770 0.93559 0.92524 1.50361 0.92215 1.19011 0.94479 0.93268 0.94586 1.21404 0.97982 0.93700 1.00391 1.21479 0.97967 0.93099 1.01401 1.22023 0.95044 0.88300 1.00772 1.62157 1.27516 1.01847 1.35065 1.22240 0.96870 0.99184 0.89791 1.21312 0.98012 0.92579 1.03053 1.21792 0.94843 0.96614 0.89368 0.90245 1.62143 1.16320 1.33247 1.19541 1.22783 0.91481 1.00488 0.93918 1.22993 0.99703 0.98398 0.95941 1.22766 0.96601 0.93562 1.00043 0.88641 1.22117 0.93755 0.90220 1.00576 0.92766 0.99259 0.99268 0.93258 0.93024 0.92676 0.92919 0.94953 0.90478 0.90937 0.94824 0.90250 0.90567 0.84971 0.92875 0.90240 0.90033 0.90077 0.90617 0.95362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.10 -4.04 5.15 30.60 0.16 -3.88 16 11 C -0.10 -3.51 5.16 30.59 0.16 -3.35 16 12 C 0.07 1.83 4.95 86.30 0.43 2.25 16 13 N -0.54 -13.23 4.68 -896.79 -4.20 -17.42 16 14 C 0.05 1.08 5.22 86.24 0.45 1.53 16 15 C -0.11 -2.16 5.64 30.08 0.17 -1.99 16 16 C 0.08 1.49 3.19 44.78 0.14 1.63 16 17 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 18 N -0.68 -12.02 7.20 -486.99 -3.51 -15.53 16 19 C 0.04 0.62 6.83 86.67 0.59 1.22 16 20 C -0.13 -1.78 6.32 32.11 0.20 -1.57 16 21 C -0.11 -1.86 3.79 -9.43 -0.04 -1.90 16 22 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 23 C 0.06 1.21 4.46 86.38 0.38 1.60 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.85 6.40 -2.39 -0.02 1.83 16 31 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 32 H 0.08 2.04 7.97 -2.39 -0.02 2.03 16 33 H 0.07 1.87 6.16 -2.38 -0.01 1.86 16 34 H 0.03 0.74 6.84 -2.39 -0.02 0.72 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.33 6.00 7.14 -89.69 -0.64 5.36 16 38 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.97 7.98 -2.39 -0.02 0.95 16 42 H 0.08 1.47 7.98 -2.39 -0.02 1.45 16 43 H 0.03 0.56 6.86 -2.39 -0.02 0.54 16 Total: -1.00 -64.02 325.17 -1.58 -65.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.32 Total: 12.44 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 3.49 Total: -34.27 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -7.42 Total: -90.67 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.02 -1.58 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385339869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.529 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds