Wall clock time and date at job start Mon Mar 30 2020 03:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.47483 * 180.02562 * 12 11 10 14 14 C 1.46340 * 110.99754 * 66.04285 * 13 12 11 15 15 C 1.53843 * 111.78032 * 181.56653 * 14 13 12 16 16 C 1.51597 * 107.00803 * 303.63752 * 15 14 13 17 17 H 1.09005 * 109.88377 * 303.44141 * 16 15 14 18 18 N 1.46520 * 117.40079 * 176.38371 * 16 15 14 19 19 C 1.49173 * 104.16361 * 200.01187 * 18 16 15 20 20 C 1.55075 * 106.81712 * 25.85252 * 19 18 16 21 21 C 1.52804 * 103.86307 * 2.68463 * 20 19 18 22 22 H 1.08992 * 110.27289 * 88.86270 * 21 20 19 23 23 C 1.47677 * 111.00033 * 193.44950 * 13 12 11 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 32 32 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 33 33 H 1.08997 * 109.02093 * 302.16034 * 14 13 12 34 34 H 1.09003 * 109.01655 * 60.97874 * 14 13 12 35 35 H 1.09003 * 109.95051 * 63.01269 * 15 14 13 36 36 H 1.09002 * 109.94652 * 184.26213 * 15 14 13 37 37 H 1.00904 * 110.99494 * 319.52970 * 18 16 15 38 38 H 1.09004 * 109.99151 * 266.51096 * 19 18 16 39 39 H 1.08999 * 110.02869 * 145.21417 * 19 18 16 40 40 H 1.08994 * 110.54676 * 244.08750 * 20 19 18 41 41 H 1.08997 * 110.54511 * 121.28016 * 20 19 18 42 42 H 1.09007 * 109.93404 * 294.42645 * 23 13 12 43 43 H 1.09001 * 109.93448 * 55.64695 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 7 1.7398 -7.4223 0.0005 14 6 0.9967 -7.5988 -1.2477 15 6 0.1894 -8.9084 -1.2512 16 6 1.1709 -10.0350 -0.9949 17 1 1.9630 -10.0140 -1.7435 18 7 0.6255 -11.3892 -0.8704 19 6 1.6910 -12.1472 -0.1526 20 6 2.4971 -11.1131 0.6754 21 6 1.7714 -9.7931 0.4189 22 1 0.9753 -9.6515 1.1497 23 6 2.6365 -8.5511 0.3206 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.1003 -6.0924 -0.8899 32 1 3.1016 -6.0923 0.8901 33 1 0.3129 -6.7597 -1.3758 34 1 1.6997 -7.6126 -2.0807 35 1 -0.5627 -8.8838 -0.4626 36 1 -0.2907 -9.0467 -2.2200 37 1 -0.2341 -11.3855 -0.3420 38 1 2.3455 -12.6409 -0.8711 39 1 1.2412 -12.8863 0.5104 40 1 3.5266 -11.0588 0.3217 41 1 2.4684 -11.3658 1.7353 42 1 3.3755 -8.6748 -0.4711 43 1 3.1366 -8.3703 1.2721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385339874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:53 Heat of formation + Delta-G solvation = -17.165764 kcal Electronic energy + Delta-G solvation = -18652.419598 eV Core-core repulsion = 15924.060930 eV Total energy + Delta-G solvation = -2728.358667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36972 -37.21045 -34.51060 -32.64596 -32.14643 -30.71446 -28.46565 -27.92334 -24.80040 -23.31140 -22.69866 -21.48773 -20.49876 -20.19997 -19.87893 -16.42201 -16.19392 -15.48675 -15.27371 -14.97057 -14.77672 -14.63256 -14.40341 -13.88129 -13.71193 -12.85047 -12.65972 -12.44415 -12.23895 -11.93100 -11.76163 -11.59686 -11.31072 -11.14274 -11.01972 -10.94672 -10.84605 -10.54022 -10.45668 -10.42999 -10.21787 -9.58153 -9.23968 -8.98841 -8.86975 -8.31289 -8.19901 -5.96299 -3.98423 3.33617 3.39648 3.43189 3.68985 3.89688 4.48291 4.48890 4.50901 4.57969 4.91726 4.95776 4.99054 5.19281 5.25638 5.35039 5.39035 5.41493 5.47154 5.51398 5.58302 5.64436 5.66717 5.71626 5.86914 5.90747 5.93186 5.95898 6.12183 6.18321 6.27786 6.46556 6.55625 6.84235 6.99201 7.05195 7.11332 7.20910 7.27432 7.72940 7.89093 8.05031 8.47901 9.09155 9.65327 11.15086 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.062895 B = 0.003117 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.081318 B = 8981.235661 C = 9245.575697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.114 4.114 12 C 0.062 3.938 13 N -0.551 5.551 14 C 0.062 3.938 15 C -0.109 4.109 16 C 0.066 3.934 17 H 0.082 0.918 18 N -0.663 5.663 19 C 0.040 3.960 20 C -0.144 4.144 21 C -0.129 4.129 22 H 0.083 0.917 23 C 0.076 3.924 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.336 0.664 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -23.251 -0.174 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.152 4.152 12 C -0.066 4.066 13 N -0.276 5.276 14 C -0.067 4.067 15 C -0.147 4.147 16 C -0.045 4.045 17 H 0.100 0.900 18 N -0.289 5.289 19 C -0.089 4.089 20 C -0.184 4.184 21 C -0.150 4.150 22 H 0.102 0.898 23 C -0.052 4.052 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.802 -23.379 -0.539 23.553 hybrid contribution 1.035 1.315 0.336 1.707 sum 3.838 -22.064 -0.203 22.396 Atomic orbital electron populations 1.69969 1.06044 1.26502 1.51056 1.25034 0.94845 0.99220 0.95445 0.86613 0.79859 0.83580 0.78060 1.20708 1.21230 1.19914 1.21296 0.93009 0.91238 1.50285 0.92795 1.19083 0.94013 0.91318 0.97126 1.21599 0.99099 0.94041 1.00019 1.21683 0.97888 0.93574 1.02016 1.22175 0.95822 0.88186 1.00369 1.61173 1.29287 1.02285 1.34869 1.22011 0.97029 0.97868 0.89767 1.21512 0.97685 0.92958 1.02587 1.22403 0.97541 0.88238 0.96272 0.89987 1.62913 1.05430 1.11018 1.49514 1.23184 0.93679 0.96227 0.95850 1.22535 1.00111 0.95054 1.00651 1.22527 0.99593 0.93871 0.98979 0.89822 1.21758 0.93339 0.89705 1.00411 0.93057 0.96621 0.96766 0.93721 0.93503 0.91715 0.92584 0.95194 0.91063 0.89599 0.95323 0.90911 0.90675 0.84858 0.90575 0.91507 0.91193 0.91202 0.94867 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 11 C -0.11 -1.97 5.13 -26.74 -0.14 -2.11 16 12 C 0.06 0.89 5.00 -3.82 -0.02 0.87 16 13 N -0.55 -7.11 4.53 -234.71 -1.06 -8.17 16 14 C 0.06 0.74 5.22 -3.69 -0.02 0.72 16 15 C -0.11 -1.11 6.01 -27.00 -0.16 -1.27 16 16 C 0.07 0.64 2.71 -67.30 -0.18 0.46 16 17 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 18 N -0.66 -5.97 7.48 -103.41 -0.77 -6.75 16 19 C 0.04 0.31 7.56 -1.46 -0.01 0.30 16 20 C -0.14 -1.13 6.63 -25.73 -0.17 -1.30 16 21 C -0.13 -1.23 2.66 -90.06 -0.24 -1.47 16 22 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 23 C 0.08 0.83 5.20 -4.07 -0.02 0.81 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16 31 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 33 H 0.09 1.12 6.33 -51.93 -0.33 0.79 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.34 2.72 8.85 -39.29 -0.35 2.38 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.36 8.04 -51.93 -0.42 -0.05 16 43 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -30.22 330.52 -10.92 -41.14 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -8.13 Total: -2.62 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.65 Total: -18.83 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -1.10 Total: -41.62 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.22 -10.92 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385339874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.977 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds