Wall clock time and date at job start Mon Mar 30 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 N 1.46902 * 109.46912 * 183.19088 * 3 2 1 5 5 C 1.47905 * 110.99713 * 184.10877 * 4 3 2 6 6 C 1.53995 * 107.05387 * 145.84395 * 5 4 3 7 7 C 1.54595 * 105.14319 * 358.77548 * 6 5 4 8 8 H 1.09006 * 110.72489 * 96.57528 * 7 6 5 9 9 N 1.46899 * 110.72266 * 219.68196 * 7 6 5 10 10 C 1.46891 * 111.00135 * 275.89508 * 9 7 6 11 11 C 1.53002 * 109.47253 * 183.84113 * 10 9 7 12 12 C 1.50703 * 115.54724 * 294.75265 * 11 10 9 13 13 H 1.07998 * 120.00048 * 97.91097 * 12 11 10 14 14 C 1.37877 * 120.00046 * 277.91379 * 12 11 10 15 15 N 1.31515 * 120.00006 * 174.05402 * 14 12 11 16 16 Si 1.86798 * 120.00034 * 354.05348 * 14 12 11 17 17 H 1.48499 * 109.47037 * 275.21319 * 16 14 12 18 18 H 1.48498 * 109.46999 * 35.21455 * 16 14 12 19 19 H 1.48503 * 109.47131 * 155.21083 * 16 14 12 20 20 C 1.52992 * 117.52016 * 80.45269 * 11 10 9 21 21 C 1.52994 * 117.50150 * 149.08514 * 11 10 9 22 22 C 1.48537 * 111.00130 * 301.50558 * 4 3 2 23 23 H 1.09006 * 109.47412 * 59.99314 * 1 2 3 24 24 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47388 * 299.99729 * 1 2 3 26 26 H 1.09004 * 109.46883 * 240.00282 * 2 1 3 27 27 H 1.08995 * 109.47047 * 120.00308 * 2 1 3 28 28 H 1.09003 * 109.47220 * 63.19416 * 3 2 1 29 29 H 1.08998 * 109.47646 * 303.19109 * 3 2 1 30 30 H 1.08995 * 109.91981 * 26.49585 * 5 4 3 31 31 H 1.09003 * 109.91762 * 265.19516 * 5 4 3 32 32 H 1.08994 * 110.30876 * 239.85569 * 6 5 4 33 33 H 1.09007 * 110.39158 * 117.73082 * 6 5 4 34 34 H 1.00901 * 110.99742 * 151.94370 * 9 7 6 35 35 H 1.09005 * 109.47026 * 63.84256 * 10 9 7 36 36 H 1.09005 * 109.47599 * 303.83801 * 10 9 7 37 37 H 0.96997 * 120.00006 * 180.02562 * 15 14 12 38 38 H 1.09004 * 117.49957 * 214.97192 * 20 11 10 39 39 H 1.08998 * 117.50026 * 359.97438 * 20 11 10 40 40 H 1.08995 * 117.49881 * 359.97438 * 21 11 10 41 41 H 1.09006 * 117.50120 * 144.99498 * 21 11 10 42 42 H 1.08996 * 110.66312 * 81.84285 * 22 4 3 43 43 H 1.09001 * 110.66641 * 318.71415 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5070 1.4432 -0.0771 5 6 4.0421 2.8187 0.0194 6 6 5.3827 2.7300 0.7720 7 6 5.5528 1.2331 1.1189 8 1 6.1800 0.7346 0.3796 9 7 6.1138 1.0724 2.4670 10 6 7.5788 1.1771 2.4434 11 6 8.1318 0.9100 3.8448 12 6 7.7554 1.9224 4.8958 13 1 6.9308 1.7252 5.5647 14 6 8.4638 3.1004 5.0034 15 7 8.0649 4.0335 5.8398 16 14 9.9902 3.3709 3.9611 17 1 11.1649 2.7635 4.6366 18 1 9.8007 2.7364 2.6319 19 1 10.2183 4.8278 3.7861 20 6 8.2667 -0.5488 4.2854 21 6 9.5162 0.2668 3.9473 22 6 4.1003 0.6970 1.0620 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7241 1.9396 0.9173 29 1 1.6307 1.9726 -0.8600 30 1 3.3467 3.4497 0.5729 31 1 4.2029 3.2255 -0.9790 32 1 5.3455 3.3275 1.6828 33 1 6.1998 3.0654 0.1332 34 1 5.8203 0.1994 2.8790 35 1 7.8664 2.1788 2.1241 36 1 7.9845 0.4432 1.7469 37 1 8.5630 4.8624 5.9152 38 1 8.0832 -0.7765 5.3355 39 1 7.9610 -1.3188 3.5770 40 1 10.0328 0.0334 3.0163 41 1 10.1548 0.5758 4.7749 42 1 4.0932 -0.3750 0.8649 43 1 3.5704 0.9226 1.9874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389203561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:48 Heat of formation + Delta-G solvation = 25.421279 kcal Electronic energy + Delta-G solvation = -19130.889340 eV Core-core repulsion = 16404.377385 eV Total energy + Delta-G solvation = -2726.511955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.14110 -37.25335 -35.05956 -33.12176 -31.96854 -29.79724 -28.41368 -25.93955 -25.18369 -23.89954 -21.91037 -21.52005 -20.56699 -19.82308 -18.84044 -16.32800 -16.11646 -15.85438 -15.23458 -14.95637 -14.25764 -13.96254 -13.80496 -13.38436 -13.10915 -12.93555 -12.72990 -12.67294 -12.38958 -11.92655 -11.70596 -11.37593 -11.19467 -11.08385 -10.90600 -10.86057 -10.68605 -10.59226 -10.42197 -10.27182 -10.01770 -9.46379 -9.05178 -8.52348 -8.40728 -8.35655 -7.68655 -5.99392 -3.98161 3.34936 3.43605 3.47153 3.94033 4.51167 4.59048 4.77155 4.82906 4.91438 5.08974 5.10945 5.23432 5.29431 5.33418 5.43852 5.49252 5.58356 5.61083 5.74451 5.80765 5.86301 5.86631 5.99108 6.05036 6.06053 6.12386 6.14717 6.21066 6.24228 6.34401 6.45904 6.49625 6.59606 6.75632 6.92472 7.07141 7.10308 7.21966 7.77982 7.86096 8.07816 8.62985 9.05361 9.64598 11.13285 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028579 B = 0.004947 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.520109 B = 5658.851258 C = 5964.307603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.047 3.953 4 N -0.520 5.520 5 C 0.039 3.961 6 C -0.124 4.124 7 C 0.082 3.918 8 H 0.046 0.954 9 N -0.657 5.657 10 C 0.102 3.898 11 C 0.007 3.993 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.902 5.902 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.262 1.262 19 H -0.297 1.297 20 C -0.184 4.184 21 C -0.205 4.205 22 C 0.038 3.962 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.002 0.998 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 -6.496 -12.344 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.082 4.082 4 N -0.244 5.244 5 C -0.089 4.089 6 C -0.163 4.163 7 C -0.028 4.028 8 H 0.064 0.936 9 N -0.288 5.288 10 C -0.027 4.027 11 C 0.006 3.994 12 C -0.501 4.501 13 H 0.095 0.905 14 C -0.125 4.125 15 N -0.540 5.540 16 Si 0.707 3.293 17 H -0.206 1.206 18 H -0.187 1.187 19 H -0.224 1.224 20 C -0.221 4.221 21 C -0.242 4.242 22 C -0.091 4.091 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.465 -5.870 -12.605 16.820 hybrid contribution 0.948 -0.181 -0.153 0.977 sum -8.517 -6.051 -12.758 16.490 Atomic orbital electron populations 1.21737 0.95713 1.01654 1.01739 1.21547 0.95442 0.96473 1.02628 1.22327 0.88096 0.97191 1.00558 1.64764 1.05983 1.11833 1.41799 1.22837 0.96178 0.89758 1.00127 1.22470 0.95826 0.97293 1.00695 1.22385 0.93900 0.95616 0.90940 0.93602 1.60321 1.10167 1.40833 1.17511 1.21742 0.85982 0.99416 0.95588 1.19466 0.93842 0.92112 0.94016 1.20130 1.16162 0.99707 1.14077 0.90543 1.24907 0.97304 0.95453 0.94880 1.69906 1.39693 1.06799 1.37576 0.86908 0.84132 0.76283 0.82003 1.20628 1.18700 1.22362 1.22773 1.03210 0.95408 1.00739 1.23005 0.92295 1.07593 1.01355 1.23290 0.94666 0.98317 0.92779 0.92774 0.92631 0.92786 0.91284 0.91884 0.94630 0.90968 0.93724 0.90820 0.89460 0.91807 0.84559 0.91363 0.98007 0.92833 0.89595 0.91428 0.91282 0.89428 0.90586 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.20 5.67 -26.73 -0.15 -1.35 16 3 C 0.05 0.52 4.84 -3.82 -0.02 0.50 16 4 N -0.52 -6.78 5.35 -230.45 -1.23 -8.01 16 5 C 0.04 0.52 6.70 -2.75 -0.02 0.50 16 6 C -0.12 -1.95 6.54 -25.37 -0.17 -2.11 16 7 C 0.08 1.31 3.34 -65.85 -0.22 1.09 16 8 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 9 N -0.66 -12.32 6.23 -104.77 -0.65 -12.97 16 10 C 0.10 2.11 5.04 -3.83 -0.02 2.09 16 11 C 0.01 0.16 0.92 -155.66 -0.14 0.01 16 12 C -0.46 -12.81 9.32 -34.44 -0.32 -13.13 16 13 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 16 Si 0.88 21.88 24.84 -169.99 -4.22 17.66 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.20 5.92 56.52 0.33 -5.87 16 19 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 20 C -0.18 -3.68 9.95 -26.74 -0.27 -3.94 16 21 C -0.20 -4.35 7.66 -26.74 -0.20 -4.55 16 22 C 0.04 0.52 4.82 -1.90 -0.01 0.51 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.64 7.08 -51.93 -0.37 0.28 16 28 H 0.04 0.41 7.97 -51.93 -0.41 0.00 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.58 7.67 -51.93 -0.40 0.19 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 33 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 34 H 0.34 5.94 8.48 -39.29 -0.33 5.60 16 35 H 0.07 1.55 6.60 -51.93 -0.34 1.20 16 36 H 0.00 0.04 7.96 -51.93 -0.41 -0.38 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.96 7.34 -51.93 -0.38 1.58 16 42 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 43 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -29.30 333.24 -9.73 -39.02 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.15 Total: 5.28 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.27 Total: -19.17 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.11 Total: -47.81 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.22 Total: 17.66 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.30 -9.73 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389203561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.445 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds