Wall clock time and date at job start Mon Mar 30 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 N 1.46902 * 109.46912 * 183.19088 * 3 2 1 5 5 C 1.47905 * 110.99713 * 184.10877 * 4 3 2 6 6 C 1.53995 * 107.05387 * 145.84395 * 5 4 3 7 7 C 1.54595 * 105.14319 * 358.77548 * 6 5 4 8 8 H 1.09006 * 110.72489 * 96.57528 * 7 6 5 9 9 N 1.46899 * 110.72266 * 219.68196 * 7 6 5 10 10 C 1.46891 * 111.00135 * 275.89508 * 9 7 6 11 11 C 1.53002 * 109.47253 * 183.84113 * 10 9 7 12 12 C 1.50703 * 115.54724 * 294.75265 * 11 10 9 13 13 H 1.07998 * 120.00048 * 97.91097 * 12 11 10 14 14 C 1.37877 * 120.00046 * 277.91379 * 12 11 10 15 15 N 1.31515 * 120.00006 * 174.05402 * 14 12 11 16 16 Si 1.86798 * 120.00034 * 354.05348 * 14 12 11 17 17 H 1.48499 * 109.47037 * 275.21319 * 16 14 12 18 18 H 1.48498 * 109.46999 * 35.21455 * 16 14 12 19 19 H 1.48503 * 109.47131 * 155.21083 * 16 14 12 20 20 C 1.52992 * 117.52016 * 80.45269 * 11 10 9 21 21 C 1.52994 * 117.50150 * 149.08514 * 11 10 9 22 22 C 1.48537 * 111.00130 * 301.50558 * 4 3 2 23 23 H 1.09006 * 109.47412 * 59.99314 * 1 2 3 24 24 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47388 * 299.99729 * 1 2 3 26 26 H 1.09004 * 109.46883 * 240.00282 * 2 1 3 27 27 H 1.08995 * 109.47047 * 120.00308 * 2 1 3 28 28 H 1.09003 * 109.47220 * 63.19416 * 3 2 1 29 29 H 1.08998 * 109.47646 * 303.19109 * 3 2 1 30 30 H 1.08995 * 109.91981 * 26.49585 * 5 4 3 31 31 H 1.09003 * 109.91762 * 265.19516 * 5 4 3 32 32 H 1.08994 * 110.30876 * 239.85569 * 6 5 4 33 33 H 1.09007 * 110.39158 * 117.73082 * 6 5 4 34 34 H 1.00901 * 110.99742 * 151.94370 * 9 7 6 35 35 H 1.09005 * 109.47026 * 63.84256 * 10 9 7 36 36 H 1.09005 * 109.47599 * 303.83801 * 10 9 7 37 37 H 0.96997 * 120.00006 * 180.02562 * 15 14 12 38 38 H 1.09004 * 117.49957 * 214.97192 * 20 11 10 39 39 H 1.08998 * 117.50026 * 359.97438 * 20 11 10 40 40 H 1.08995 * 117.49881 * 359.97438 * 21 11 10 41 41 H 1.09006 * 117.50120 * 144.99498 * 21 11 10 42 42 H 1.08996 * 110.66312 * 81.84285 * 22 4 3 43 43 H 1.09001 * 110.66641 * 318.71415 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5070 1.4432 -0.0771 5 6 4.0421 2.8187 0.0194 6 6 5.3827 2.7300 0.7720 7 6 5.5528 1.2331 1.1189 8 1 6.1800 0.7346 0.3796 9 7 6.1138 1.0724 2.4670 10 6 7.5788 1.1771 2.4434 11 6 8.1318 0.9100 3.8448 12 6 7.7554 1.9224 4.8958 13 1 6.9308 1.7252 5.5647 14 6 8.4638 3.1004 5.0034 15 7 8.0649 4.0335 5.8398 16 14 9.9902 3.3709 3.9611 17 1 11.1649 2.7635 4.6366 18 1 9.8007 2.7364 2.6319 19 1 10.2183 4.8278 3.7861 20 6 8.2667 -0.5488 4.2854 21 6 9.5162 0.2668 3.9473 22 6 4.1003 0.6970 1.0620 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7241 1.9396 0.9173 29 1 1.6307 1.9726 -0.8600 30 1 3.3467 3.4497 0.5729 31 1 4.2029 3.2255 -0.9790 32 1 5.3455 3.3275 1.6828 33 1 6.1998 3.0654 0.1332 34 1 5.8203 0.1994 2.8790 35 1 7.8664 2.1788 2.1241 36 1 7.9845 0.4432 1.7469 37 1 8.5630 4.8624 5.9152 38 1 8.0832 -0.7765 5.3355 39 1 7.9610 -1.3188 3.5770 40 1 10.0328 0.0334 3.0163 41 1 10.1548 0.5758 4.7749 42 1 4.0932 -0.3750 0.8649 43 1 3.5704 0.9226 1.9874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389203561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:47 Heat of formation + Delta-G solvation = 5.079191 kcal Electronic energy + Delta-G solvation = -19131.771439 eV Core-core repulsion = 16404.377385 eV Total energy + Delta-G solvation = -2727.394054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29741 -38.88686 -36.21801 -34.31378 -34.06986 -30.88043 -29.65955 -27.85196 -26.28379 -25.42050 -23.29688 -22.75840 -21.58107 -21.05500 -20.69121 -18.27194 -17.34943 -17.01210 -16.74864 -16.21855 -15.81875 -15.08790 -14.97373 -14.88680 -14.78325 -14.51042 -14.02105 -13.77581 -13.63887 -13.24735 -13.02086 -12.73284 -12.58410 -12.40976 -12.23889 -12.13518 -12.01269 -11.91858 -11.76514 -11.55961 -11.47639 -11.34364 -10.96446 -10.51520 -10.23836 -9.44560 -9.13140 -8.20915 -6.23056 1.37406 1.39083 1.50423 2.42144 2.83279 3.12028 3.20792 3.56549 3.65008 3.79418 4.06947 4.11970 4.22278 4.23123 4.32341 4.38965 4.45765 4.48412 4.53905 4.60866 4.62784 4.70883 4.80525 4.86581 4.87019 4.91358 4.94055 4.96459 5.11466 5.13008 5.19487 5.23106 5.30089 5.40795 5.44659 5.54751 5.78093 5.83033 6.06727 6.32551 6.43654 6.67912 6.82818 7.43213 8.95743 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028579 B = 0.004947 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.520109 B = 5658.851258 C = 5964.307603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.046 3.954 4 N -0.520 5.520 5 C 0.044 3.956 6 C -0.126 4.126 7 C 0.083 3.917 8 H 0.054 0.946 9 N -0.676 5.676 10 C 0.113 3.887 11 C -0.022 4.022 12 C -0.457 4.457 13 H 0.028 0.972 14 C 0.017 3.983 15 N -0.955 5.955 16 Si 0.938 3.062 17 H -0.271 1.271 18 H -0.237 1.237 19 H -0.303 1.303 20 C -0.162 4.162 21 C -0.200 4.200 22 C 0.047 3.953 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.342 0.658 35 H 0.045 0.955 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 -8.347 -14.977 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.083 4.083 4 N -0.244 5.244 5 C -0.084 4.084 6 C -0.165 4.165 7 C -0.028 4.028 8 H 0.072 0.928 9 N -0.307 5.307 10 C -0.017 4.017 11 C -0.023 4.023 12 C -0.495 4.495 13 H 0.046 0.954 14 C -0.179 4.179 15 N -0.596 5.596 16 Si 0.763 3.237 17 H -0.196 1.196 18 H -0.161 1.161 19 H -0.231 1.231 20 C -0.199 4.199 21 C -0.238 4.238 22 C -0.081 4.081 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.213 -7.756 -15.252 19.434 hybrid contribution 0.760 0.365 0.736 1.120 sum -8.453 -7.392 -14.516 18.352 Atomic orbital electron populations 1.21715 0.94455 1.02363 1.02024 1.21513 0.96515 0.95300 1.02335 1.22414 0.86838 0.98328 1.00671 1.64834 1.07195 1.11306 1.41091 1.22805 0.94776 0.90227 1.00590 1.22439 0.97512 0.96907 0.99601 1.22428 0.95063 0.95734 0.89525 0.92813 1.60227 1.09416 1.41490 1.19617 1.21481 0.87088 0.98784 0.94317 1.19361 0.96176 0.92791 0.93971 1.20286 1.14126 1.00916 1.14178 0.95423 1.25731 1.00602 0.95253 0.96305 1.70068 1.41630 1.07647 1.40271 0.85933 0.80279 0.75946 0.81513 1.19609 1.16051 1.23050 1.22808 1.01617 0.94328 1.01165 1.23039 0.91673 1.06854 1.02194 1.23196 0.93125 0.99215 0.92579 0.91986 0.91740 0.93025 0.91143 0.92531 0.95448 0.89786 0.93894 0.89152 0.92795 0.91399 0.83914 0.93672 0.95373 0.93027 0.90521 0.87838 0.88341 0.90940 0.88986 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.12 -2.07 5.67 30.59 0.17 -1.90 16 3 C 0.05 0.93 4.84 86.30 0.42 1.34 16 4 N -0.52 -12.57 5.35 -883.00 -4.73 -17.30 16 5 C 0.04 1.12 6.70 86.45 0.58 1.70 16 6 C -0.13 -3.89 6.54 31.47 0.21 -3.68 16 7 C 0.08 2.51 3.34 46.12 0.15 2.67 16 8 H 0.05 1.58 7.88 -2.38 -0.02 1.56 16 9 N -0.68 -24.72 6.23 -485.37 -3.02 -27.75 16 10 C 0.11 4.46 5.04 86.31 0.43 4.89 16 11 C -0.02 -0.97 0.92 -52.93 -0.05 -1.02 16 12 C -0.46 -25.95 9.32 25.60 0.24 -25.71 16 13 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 14 C 0.02 1.00 5.47 84.65 0.46 1.46 16 15 N -0.96 -60.94 13.96 21.45 0.30 -60.64 16 16 Si 0.94 45.23 24.84 68.60 1.70 46.93 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.24 -10.40 5.92 99.48 0.59 -9.81 16 19 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 20 C -0.16 -6.05 9.95 30.59 0.30 -5.74 16 21 C -0.20 -7.89 7.66 30.59 0.23 -7.66 16 22 C 0.05 1.22 4.82 86.65 0.42 1.64 16 23 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.05 7.08 -2.39 -0.02 1.04 16 28 H 0.03 0.61 7.97 -2.39 -0.02 0.59 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.10 7.67 -2.39 -0.02 1.08 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 2.01 8.05 -2.39 -0.02 1.99 16 33 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.34 11.64 8.48 -89.69 -0.76 10.88 16 35 H 0.04 1.98 6.60 -2.38 -0.02 1.96 16 36 H 0.03 0.98 7.96 -2.38 -0.02 0.96 16 37 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 39 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.07 3.08 7.34 -2.38 -0.02 3.07 16 42 H 0.09 2.10 7.73 -2.39 -0.02 2.08 16 43 H 0.04 1.25 8.01 -2.39 -0.02 1.23 16 Total: -1.00 -64.97 333.24 -1.39 -66.36 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.07 Total: 25.77 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.29 Total: -33.38 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -7.45 Total: -105.69 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.70 Total: 46.93 kcal Total: -64.97 -1.39 -66.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389203561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.440 kcal (2) G-P(sol) polarization free energy of solvation -64.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds