Wall clock time and date at job start Mon Mar 30 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 N 1.46901 * 109.46965 * 184.67708 * 3 2 1 5 5 C 1.47905 * 110.99948 * 176.02202 * 4 3 2 6 6 C 1.53993 * 107.22557 * 214.25875 * 5 4 3 7 7 C 1.54596 * 105.14153 * 1.12695 * 6 5 4 8 8 H 1.08996 * 110.72105 * 263.60081 * 7 6 5 9 9 N 1.46898 * 110.72316 * 140.49562 * 7 6 5 10 10 C 1.46899 * 111.00031 * 86.45546 * 9 7 6 11 11 C 1.52999 * 109.47302 * 175.16624 * 10 9 7 12 12 C 1.50700 * 115.54715 * 39.70131 * 11 10 9 13 13 H 1.07999 * 120.00339 * 274.26017 * 12 11 10 14 14 C 1.37878 * 119.99837 * 94.26589 * 12 11 10 15 15 N 1.31512 * 120.00005 * 354.64559 * 14 12 11 16 16 Si 1.86807 * 120.00126 * 174.64475 * 14 12 11 17 17 H 1.48505 * 109.46902 * 90.00018 * 16 14 12 18 18 H 1.48495 * 109.47327 * 209.99779 * 16 14 12 19 19 H 1.48503 * 109.46831 * 330.00080 * 16 14 12 20 20 C 1.53001 * 117.49907 * 253.99833 * 11 10 9 21 21 C 1.52991 * 117.49982 * 185.37406 * 11 10 9 22 22 C 1.48817 * 111.18296 * 58.68777 * 4 3 2 23 23 H 1.08999 * 109.47566 * 300.00555 * 1 2 3 24 24 H 1.09007 * 109.47069 * 60.00425 * 1 2 3 25 25 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46965 * 239.99888 * 2 1 3 27 27 H 1.09000 * 109.47035 * 119.99983 * 2 1 3 28 28 H 1.09002 * 109.47454 * 64.67793 * 3 2 1 29 29 H 1.09002 * 109.47225 * 304.67780 * 3 2 1 30 30 H 1.08995 * 109.91543 * 94.80417 * 5 4 3 31 31 H 1.09009 * 109.91467 * 333.71000 * 5 4 3 32 32 H 1.09003 * 110.31106 * 120.04722 * 6 5 4 33 33 H 1.08999 * 110.30779 * 242.20694 * 6 5 4 34 34 H 1.00901 * 110.99694 * 210.40221 * 9 7 6 35 35 H 1.09004 * 109.46956 * 295.16498 * 10 9 7 36 36 H 1.08999 * 109.47609 * 55.16152 * 10 9 7 37 37 H 0.97009 * 120.00203 * 180.02562 * 15 14 12 38 38 H 1.09007 * 117.49733 * 359.97438 * 20 11 10 39 39 H 1.09003 * 117.49995 * 145.01781 * 20 11 10 40 40 H 1.09010 * 117.50280 * 214.97442 * 21 11 10 41 41 H 1.08997 * 117.50630 * 359.97438 * 21 11 10 42 42 H 1.08998 * 110.51815 * 41.07157 * 22 4 3 43 43 H 1.08997 * 110.84004 * 278.08597 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5046 1.4440 -0.1129 5 6 4.0272 2.8241 -0.2117 6 6 5.2582 2.7805 -1.1359 7 6 5.3816 1.3033 -1.5748 8 1 6.0974 0.7730 -0.9469 9 7 5.7661 1.2118 -2.9896 10 6 7.2260 1.2674 -3.1430 11 6 7.5931 1.0488 -4.6122 12 6 6.6879 1.7171 -5.6146 13 1 5.7866 1.2211 -5.9433 14 6 7.0104 2.9618 -6.1123 15 7 8.0498 3.6115 -5.6356 16 14 5.9710 3.7255 -7.4636 17 1 4.8784 4.5261 -6.8550 18 1 6.8212 4.6066 -8.3039 19 1 5.3872 2.6509 -8.3061 20 6 8.1962 -0.3040 -4.9959 21 6 9.0791 0.9451 -4.9611 22 6 3.9488 0.7559 -1.3554 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7467 1.9316 0.9289 29 1 1.6098 1.9800 -0.8451 30 1 4.3168 3.1830 0.7759 31 1 3.2668 3.4795 -0.6366 32 1 5.1026 3.4214 -2.0038 33 1 6.1508 3.0895 -0.5919 34 1 5.3895 0.3771 -3.4133 35 1 7.5885 2.2430 -2.8192 36 1 7.6853 0.4888 -2.5340 37 1 8.2765 4.4874 -5.9855 38 1 8.3317 -1.0381 -4.2016 39 1 7.9382 -0.7109 -5.9737 40 1 9.4021 1.3598 -5.9160 41 1 9.7953 1.0329 -4.1442 42 1 3.3028 1.0227 -2.1918 43 1 3.9673 -0.3248 -1.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389203572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:51 Heat of formation + Delta-G solvation = 22.696750 kcal Electronic energy + Delta-G solvation = -19108.672153 eV Core-core repulsion = 16382.042054 eV Total energy + Delta-G solvation = -2726.630099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.02768 -36.84998 -34.94776 -33.02101 -31.72954 -29.72156 -28.28351 -25.61653 -25.09090 -23.82874 -21.77721 -20.98406 -20.51773 -19.74479 -18.94451 -15.99790 -15.97244 -15.75582 -15.17409 -14.65272 -14.19902 -13.90527 -13.73443 -13.18617 -13.05562 -12.86159 -12.66794 -12.45308 -11.91328 -11.81222 -11.51370 -11.25448 -11.01637 -10.88608 -10.84446 -10.77663 -10.68368 -10.57575 -10.38932 -10.24027 -10.03874 -9.34964 -8.79802 -8.34441 -8.26095 -7.97063 -7.47488 -5.88645 -3.90503 3.37409 3.43724 3.46740 4.00124 4.51874 4.72435 4.87330 4.92515 5.05226 5.16838 5.27360 5.34140 5.38775 5.47276 5.51261 5.57373 5.61623 5.64821 5.81882 5.89377 5.92442 6.04385 6.11770 6.15823 6.18133 6.26612 6.35309 6.43415 6.54647 6.58239 6.66977 6.80149 6.92628 7.05783 7.12826 7.20518 7.50643 7.61359 8.01485 8.07385 8.27231 8.59995 9.06631 9.71963 11.20637 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.005168 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.365175 B = 5416.326146 C = 5822.458323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.047 3.953 4 N -0.520 5.520 5 C 0.039 3.961 6 C -0.121 4.121 7 C 0.082 3.918 8 H 0.045 0.955 9 N -0.653 5.653 10 C 0.110 3.890 11 C 0.039 3.961 12 C -0.464 4.464 13 H 0.057 0.943 14 C 0.070 3.930 15 N -0.884 5.884 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.222 4.222 21 C -0.146 4.146 22 C 0.037 3.963 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.335 0.665 35 H 0.066 0.934 36 H -0.004 1.004 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 -4.581 10.653 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.081 4.081 4 N -0.244 5.244 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.029 4.029 8 H 0.062 0.938 9 N -0.283 5.283 10 C -0.019 4.019 11 C 0.039 3.961 12 C -0.502 4.502 13 H 0.075 0.925 14 C -0.131 4.131 15 N -0.522 5.522 16 Si 0.715 3.285 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.259 4.259 21 C -0.184 4.184 22 C -0.091 4.091 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.014 0.986 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.252 -3.983 10.983 14.903 hybrid contribution -0.531 0.133 -1.077 1.208 sum -9.783 -3.850 9.906 14.445 Atomic orbital electron populations 1.21741 0.95778 1.01637 1.01703 1.21553 0.95338 0.96509 1.02723 1.22318 0.87927 0.97068 1.00800 1.64792 1.09790 1.13671 1.36152 1.22838 0.96829 0.89499 0.99773 1.22439 0.96653 0.97793 0.99072 1.22375 0.94389 0.95327 0.90776 0.93750 1.60397 1.12647 1.44737 1.10530 1.21535 0.85586 0.98478 0.96335 1.18930 0.92840 0.92549 0.91814 1.20163 1.06602 1.01533 1.21870 0.92492 1.24886 0.95008 0.96844 0.96403 1.70027 1.27050 1.13224 1.41899 0.86695 0.80311 0.79184 0.82290 1.20861 1.21580 1.20133 1.23158 1.09999 0.92029 1.00711 1.22393 0.94825 0.99663 1.01545 1.23350 0.96091 0.98688 0.91015 0.92815 0.92809 0.92633 0.91721 0.91386 0.91037 0.94734 0.90937 0.93966 0.89716 0.91836 0.84667 0.91601 0.98621 0.93463 0.92292 0.90611 0.89641 0.92326 0.92639 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.15 0.37 -0.91 16 2 C -0.12 -1.25 5.88 -26.73 -0.16 -1.41 16 3 C 0.05 0.54 4.84 -3.82 -0.02 0.53 16 4 N -0.52 -7.06 5.36 -230.20 -1.23 -8.29 16 5 C 0.04 0.53 6.69 -2.75 -0.02 0.52 16 6 C -0.12 -1.96 6.62 -25.37 -0.17 -2.13 16 7 C 0.08 1.37 3.35 -65.85 -0.22 1.15 16 8 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 9 N -0.65 -12.89 5.66 -104.77 -0.59 -13.49 16 10 C 0.11 2.41 5.68 -3.83 -0.02 2.39 16 11 C 0.04 0.95 1.82 -155.66 -0.28 0.67 16 12 C -0.46 -12.44 8.21 -34.44 -0.28 -12.72 16 13 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 14 C 0.07 1.93 5.35 -17.82 -0.10 1.84 16 15 N -0.88 -25.19 12.32 55.43 0.68 -24.51 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.22 -4.86 9.88 -26.73 -0.26 -5.12 16 21 C -0.15 -3.49 8.95 -26.74 -0.24 -3.73 16 22 C 0.04 0.53 4.81 -1.74 -0.01 0.52 16 23 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.70 6.68 -51.93 -0.35 0.35 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.42 7.98 -51.93 -0.41 0.00 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.57 7.67 -51.92 -0.40 0.17 16 32 H 0.08 1.58 8.05 -51.93 -0.42 1.16 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.34 6.42 8.44 -39.29 -0.33 6.08 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.00 -0.09 7.78 -51.93 -0.40 -0.49 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 38 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.09 2.21 7.92 -51.92 -0.41 1.80 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 0.85 8.01 -51.93 -0.42 0.43 16 43 H 0.08 1.02 7.58 -51.93 -0.39 0.62 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -27.75 339.75 -10.59 -38.33 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.13 Total: 4.78 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.41 Total: -18.42 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -1.14 Total: -46.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.75 -10.59 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389203572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.030 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds