Wall clock time and date at job start Mon Mar 30 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46680 * 2 1 4 4 H 1.09005 * 109.46941 * 183.24253 * 3 2 1 5 5 C 1.50707 * 109.47224 * 63.24057 * 3 2 1 6 6 H 1.07995 * 119.99353 * 242.46888 * 5 3 2 7 7 C 1.37870 * 119.99788 * 62.46916 * 5 3 2 8 8 N 1.31514 * 119.99783 * 196.17000 * 7 5 3 9 9 Si 1.86793 * 120.00445 * 16.17252 * 7 5 3 10 10 H 1.48496 * 109.47373 * 89.06334 * 9 7 5 11 11 H 1.48504 * 109.47412 * 209.06604 * 9 7 5 12 12 H 1.48503 * 109.47029 * 329.06667 * 9 7 5 13 13 N 1.46897 * 109.47262 * 303.23949 * 3 2 1 14 14 C 1.49939 * 110.99878 * 298.69339 * 13 3 2 15 15 C 1.53698 * 106.17569 * 164.88643 * 14 13 3 16 16 C 1.51671 * 111.02646 * 103.92206 * 15 14 13 17 17 H 1.08999 * 109.23971 * 59.52112 * 16 15 14 18 18 C 1.53610 * 110.86206 * 180.42945 * 16 15 14 19 19 N 1.47597 * 105.61625 * 149.59525 * 18 16 15 20 20 C 1.47209 * 107.67075 * 329.89425 * 19 18 16 21 21 C 1.53827 * 107.84108 * 20.22914 * 20 19 18 22 22 H 1.09001 * 111.21102 * 119.03239 * 21 20 19 23 23 C 1.52025 * 109.17451 * 242.05319 * 21 20 19 24 24 C 1.43628 * 111.00108 * 178.89334 * 13 3 2 25 25 H 1.09007 * 109.47311 * 183.90959 * 1 2 3 26 26 H 1.08994 * 109.47457 * 303.91115 * 1 2 3 27 27 H 1.09001 * 109.47143 * 63.91402 * 1 2 3 28 28 H 1.08990 * 109.47297 * 240.00010 * 2 1 3 29 29 H 1.08994 * 109.47104 * 119.99538 * 2 1 3 30 30 H 0.96996 * 120.00542 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.10309 * 284.04774 * 14 13 3 32 32 H 1.09004 * 110.10395 * 45.72113 * 14 13 3 33 33 H 1.09009 * 109.16591 * 343.52854 * 15 14 13 34 34 H 1.08994 * 109.12918 * 224.29819 * 15 14 13 35 35 H 1.08999 * 110.22435 * 30.56258 * 18 16 15 36 36 H 1.09001 * 110.22385 * 268.63018 * 18 16 15 37 37 H 1.00904 * 110.99895 * 208.21231 * 19 18 16 38 38 H 1.08998 * 109.79054 * 260.64087 * 20 19 18 39 39 H 1.09005 * 109.78781 * 139.82137 * 20 19 18 40 40 H 1.08996 * 108.95765 * 78.80666 * 23 21 20 41 41 H 1.09006 * 108.89072 * 320.10417 * 23 21 20 42 42 H 1.09000 * 108.28979 * 306.30956 * 24 13 3 43 43 H 1.09000 * 108.29304 * 63.40941 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1284 1.4431 -0.0581 5 6 1.6041 2.1294 1.2687 6 1 0.9468 2.9849 1.2211 7 6 2.0447 1.6655 2.4900 8 7 1.4362 2.0401 3.5941 9 14 3.5059 0.5050 2.5766 10 1 4.7594 1.2943 2.6813 11 1 3.3719 -0.3716 3.7678 12 1 3.5480 -0.3303 1.3495 13 7 1.4873 2.1572 -1.1583 14 6 1.9266 1.5199 -2.4425 15 6 1.0076 2.0850 -3.5372 16 6 1.7290 3.1292 -4.3677 17 1 2.6042 2.6760 -4.8332 18 6 0.8040 3.6990 -5.4537 19 7 1.2518 5.0891 -5.6677 20 6 1.8018 5.5824 -4.3944 21 6 2.1626 4.3607 -3.5321 22 1 3.2280 4.3411 -3.3023 23 6 1.3275 4.3818 -2.2620 24 6 1.9255 3.5249 -1.1763 25 1 -0.3634 -1.0253 0.0701 26 1 -0.3634 0.5733 0.8528 27 1 -0.3633 0.4519 -0.9230 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7458 1.7135 4.4533 31 1 2.9641 1.7790 -2.6536 32 1 1.8144 0.4374 -2.3811 33 1 0.1335 2.5398 -3.0711 34 1 0.6842 1.2718 -4.1870 35 1 -0.2311 3.6851 -5.1124 36 1 0.9055 3.1247 -6.3745 37 1 0.4890 5.6704 -5.9816 38 1 1.0562 6.1893 -3.8808 39 1 2.6954 6.1771 -4.5842 40 1 0.3263 4.0164 -2.4904 41 1 1.2560 5.4088 -1.9036 42 1 1.6831 3.9744 -0.2133 43 1 3.0091 3.5355 -1.2937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390816010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:12 Heat of formation + Delta-G solvation = 12.277100 kcal Electronic energy + Delta-G solvation = -20233.174550 eV Core-core repulsion = 17506.092621 eV Total energy + Delta-G solvation = -2727.081929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01084 -37.32970 -34.12479 -32.19004 -31.93546 -30.82070 -28.10219 -27.27129 -25.37930 -23.44288 -22.33882 -21.41434 -20.91624 -19.20491 -18.48112 -16.64238 -16.28471 -15.94148 -15.31685 -14.64181 -14.06442 -13.67427 -13.60967 -13.35110 -13.00593 -12.77960 -12.57695 -12.41587 -12.03656 -11.90201 -11.68048 -11.23442 -11.22043 -11.02259 -10.89048 -10.55246 -10.33453 -10.17850 -10.07431 -9.92196 -9.88793 -9.77666 -9.24798 -8.90662 -8.49003 -8.41619 -7.37401 -6.10417 -4.02743 3.26359 3.35753 3.38526 4.24339 4.41225 4.59741 4.67362 4.83638 5.04984 5.17157 5.23710 5.37976 5.53875 5.62288 5.66604 5.77552 5.81952 5.86133 5.94104 5.97886 6.05500 6.14649 6.22014 6.27889 6.29999 6.37304 6.45433 6.50797 6.58484 6.76001 6.82076 6.84194 6.89874 7.02255 7.12386 7.20834 7.26963 7.53052 7.70859 7.95224 8.17640 8.63888 8.99839 9.55972 11.02181 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.006135 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.229153 B = 4563.099093 C = 4861.842100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.186 3.814 4 H -0.010 1.010 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.498 5.498 14 C 0.035 3.965 15 C -0.111 4.111 16 C -0.088 4.088 17 H 0.068 0.932 18 C 0.050 3.950 19 N -0.682 5.682 20 C 0.049 3.951 21 C -0.093 4.093 22 H 0.079 0.921 23 C -0.115 4.115 24 C 0.057 3.943 25 H 0.019 0.981 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.336 0.664 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 2.262 -15.120 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.079 3.921 4 H 0.008 0.992 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.222 5.222 14 C -0.093 4.093 15 C -0.149 4.149 16 C -0.107 4.107 17 H 0.086 0.914 18 C -0.080 4.080 19 N -0.311 5.311 20 C -0.080 4.080 21 C -0.112 4.112 22 H 0.097 0.903 23 C -0.152 4.152 24 C -0.073 4.073 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -0.212 2.077 -15.151 15.295 hybrid contribution 1.036 -0.452 0.729 1.346 sum 0.824 1.625 -14.422 14.537 Atomic orbital electron populations 1.21470 0.95665 0.98225 1.02810 1.21926 0.97126 0.97604 0.98691 1.19647 0.91763 0.91168 0.89538 0.99247 1.20822 1.30150 1.15523 0.87866 0.90195 1.24832 0.96275 0.95712 0.95666 1.69968 1.38959 1.45740 0.98136 0.87358 0.84262 0.81786 0.78160 1.20848 1.21400 1.17799 1.63051 1.56815 1.01333 1.01033 1.23027 0.95917 0.99258 0.91099 1.21643 0.99809 0.97074 0.96337 1.21791 0.98285 0.95653 0.94999 0.91385 1.22598 0.97166 0.89700 0.98489 1.62016 1.36307 1.03359 1.29447 1.22603 0.99543 0.96877 0.88993 1.22060 1.00258 0.93481 0.95413 0.90272 1.21313 1.00391 0.99433 0.94106 1.20958 0.95998 0.90787 0.99532 0.96154 0.91159 0.93174 0.95405 0.92674 0.92729 0.95041 0.90940 0.89822 0.92602 0.94135 0.90729 0.84865 0.93813 0.91045 0.90685 0.92403 0.89504 0.97176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.51 37.16 0.35 -2.21 16 2 C -0.12 -2.50 4.64 -26.73 -0.12 -2.63 16 3 C 0.19 4.28 1.24 -68.86 -0.09 4.20 16 4 H -0.01 -0.24 6.97 -51.93 -0.36 -0.60 16 5 C -0.51 -13.55 7.05 -34.44 -0.24 -13.80 16 6 H 0.08 2.35 6.92 -52.49 -0.36 1.99 16 7 C 0.08 2.16 5.32 -17.82 -0.09 2.07 16 8 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 9 Si 0.86 20.92 25.81 -169.99 -4.39 16.53 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.25 -5.86 5.38 56.52 0.30 -5.55 16 13 N -0.50 -9.83 3.61 -229.07 -0.83 -10.66 16 14 C 0.03 0.58 5.32 -1.76 -0.01 0.57 16 15 C -0.11 -1.53 4.64 -27.04 -0.13 -1.66 16 16 C -0.09 -1.12 2.61 -89.91 -0.23 -1.35 16 17 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.05 0.56 7.03 -3.12 -0.02 0.53 16 19 N -0.68 -7.61 7.42 -112.19 -0.83 -8.44 16 20 C 0.05 0.57 7.11 -3.22 -0.02 0.54 16 21 C -0.09 -1.23 3.11 -89.62 -0.28 -1.51 16 22 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 23 C -0.11 -1.71 4.52 -28.38 -0.13 -1.84 16 24 C 0.06 1.06 4.51 -6.72 -0.03 1.03 16 25 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.07 1.65 7.19 -51.93 -0.37 1.28 16 27 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 28 H 0.03 0.54 6.33 -51.93 -0.33 0.21 16 29 H 0.05 1.27 4.62 -51.93 -0.24 1.03 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.53 7.40 -51.93 -0.38 0.14 16 32 H 0.07 1.21 5.92 -51.93 -0.31 0.90 16 33 H 0.08 1.26 5.56 -51.92 -0.29 0.98 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.45 7.93 -51.93 -0.41 0.03 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.34 3.13 8.91 -39.29 -0.35 2.78 16 38 H 0.04 0.48 7.37 -51.93 -0.38 0.10 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.16 5.67 -51.93 -0.29 0.86 16 41 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 42 H 0.09 1.87 6.07 -51.93 -0.31 1.55 16 43 H 0.01 0.19 7.31 -51.93 -0.38 -0.19 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -28.14 303.26 -9.07 -37.22 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.32 Total: 2.52 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.05 Total: -16.05 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.89 Total: -44.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.39 Total: 16.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.14 -9.07 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390816010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.495 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds