Wall clock time and date at job start Mon Mar 30 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46680 * 2 1 4 4 H 1.09005 * 109.46941 * 183.24253 * 3 2 1 5 5 C 1.50707 * 109.47224 * 63.24057 * 3 2 1 6 6 H 1.07995 * 119.99353 * 242.46888 * 5 3 2 7 7 C 1.37870 * 119.99788 * 62.46916 * 5 3 2 8 8 N 1.31514 * 119.99783 * 196.17000 * 7 5 3 9 9 Si 1.86793 * 120.00445 * 16.17252 * 7 5 3 10 10 H 1.48496 * 109.47373 * 89.06334 * 9 7 5 11 11 H 1.48504 * 109.47412 * 209.06604 * 9 7 5 12 12 H 1.48503 * 109.47029 * 329.06667 * 9 7 5 13 13 N 1.46897 * 109.47262 * 303.23949 * 3 2 1 14 14 C 1.49939 * 110.99878 * 298.69339 * 13 3 2 15 15 C 1.53698 * 106.17569 * 164.88643 * 14 13 3 16 16 C 1.51671 * 111.02646 * 103.92206 * 15 14 13 17 17 H 1.08999 * 109.23971 * 59.52112 * 16 15 14 18 18 C 1.53610 * 110.86206 * 180.42945 * 16 15 14 19 19 N 1.47597 * 105.61625 * 149.59525 * 18 16 15 20 20 C 1.47209 * 107.67075 * 329.89425 * 19 18 16 21 21 C 1.53827 * 107.84108 * 20.22914 * 20 19 18 22 22 H 1.09001 * 111.21102 * 119.03239 * 21 20 19 23 23 C 1.52025 * 109.17451 * 242.05319 * 21 20 19 24 24 C 1.43628 * 111.00108 * 178.89334 * 13 3 2 25 25 H 1.09007 * 109.47311 * 183.90959 * 1 2 3 26 26 H 1.08994 * 109.47457 * 303.91115 * 1 2 3 27 27 H 1.09001 * 109.47143 * 63.91402 * 1 2 3 28 28 H 1.08990 * 109.47297 * 240.00010 * 2 1 3 29 29 H 1.08994 * 109.47104 * 119.99538 * 2 1 3 30 30 H 0.96996 * 120.00542 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.10309 * 284.04774 * 14 13 3 32 32 H 1.09004 * 110.10395 * 45.72113 * 14 13 3 33 33 H 1.09009 * 109.16591 * 343.52854 * 15 14 13 34 34 H 1.08994 * 109.12918 * 224.29819 * 15 14 13 35 35 H 1.08999 * 110.22435 * 30.56258 * 18 16 15 36 36 H 1.09001 * 110.22385 * 268.63018 * 18 16 15 37 37 H 1.00904 * 110.99895 * 208.21231 * 19 18 16 38 38 H 1.08998 * 109.79054 * 260.64087 * 20 19 18 39 39 H 1.09005 * 109.78781 * 139.82137 * 20 19 18 40 40 H 1.08996 * 108.95765 * 78.80666 * 23 21 20 41 41 H 1.09006 * 108.89072 * 320.10417 * 23 21 20 42 42 H 1.09000 * 108.28979 * 306.30956 * 24 13 3 43 43 H 1.09000 * 108.29304 * 63.40941 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1284 1.4431 -0.0581 5 6 1.6041 2.1294 1.2687 6 1 0.9468 2.9849 1.2211 7 6 2.0447 1.6655 2.4900 8 7 1.4362 2.0401 3.5941 9 14 3.5059 0.5050 2.5766 10 1 4.7594 1.2943 2.6813 11 1 3.3719 -0.3716 3.7678 12 1 3.5480 -0.3303 1.3495 13 7 1.4873 2.1572 -1.1583 14 6 1.9266 1.5199 -2.4425 15 6 1.0076 2.0850 -3.5372 16 6 1.7290 3.1292 -4.3677 17 1 2.6042 2.6760 -4.8332 18 6 0.8040 3.6990 -5.4537 19 7 1.2518 5.0891 -5.6677 20 6 1.8018 5.5824 -4.3944 21 6 2.1626 4.3607 -3.5321 22 1 3.2280 4.3411 -3.3023 23 6 1.3275 4.3818 -2.2620 24 6 1.9255 3.5249 -1.1763 25 1 -0.3634 -1.0253 0.0701 26 1 -0.3634 0.5733 0.8528 27 1 -0.3633 0.4519 -0.9230 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7458 1.7135 4.4533 31 1 2.9641 1.7790 -2.6536 32 1 1.8144 0.4374 -2.3811 33 1 0.1335 2.5398 -3.0711 34 1 0.6842 1.2718 -4.1870 35 1 -0.2311 3.6851 -5.1124 36 1 0.9055 3.1247 -6.3745 37 1 0.4890 5.6704 -5.9816 38 1 1.0562 6.1893 -3.8808 39 1 2.6954 6.1771 -4.5842 40 1 0.3263 4.0164 -2.4904 41 1 1.2560 5.4088 -1.9036 42 1 1.6831 3.9744 -0.2133 43 1 3.0091 3.5355 -1.2937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390816010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:12 Heat of formation + Delta-G solvation = -7.317858 kcal Electronic energy + Delta-G solvation = -20234.024252 eV Core-core repulsion = 17506.092621 eV Total energy + Delta-G solvation = -2727.931630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20127 -38.75766 -35.66704 -33.93359 -33.32561 -32.23292 -29.39835 -28.79404 -26.88294 -25.05035 -23.77152 -22.56030 -22.19304 -20.94257 -19.58254 -18.53466 -17.52803 -17.27376 -16.68090 -16.17320 -15.61642 -15.26512 -15.02652 -14.72408 -14.51653 -14.36458 -13.85968 -13.70853 -13.43916 -13.07174 -12.99735 -12.84521 -12.72335 -12.48237 -12.35017 -12.27671 -11.94377 -11.76361 -11.52201 -11.37737 -11.23640 -11.08218 -10.99900 -10.75008 -10.49349 -9.34615 -9.00687 -8.27481 -6.22723 1.30629 1.35602 1.43064 2.34996 3.04074 3.22083 3.40910 3.64749 3.72906 3.93748 4.12084 4.21700 4.35692 4.40618 4.47451 4.53267 4.56924 4.62143 4.69232 4.70158 4.78959 4.82310 4.91040 4.93577 5.01338 5.11440 5.15219 5.20031 5.22295 5.29040 5.32315 5.40119 5.41958 5.43564 5.64750 5.74716 5.84096 5.92866 6.08244 6.49842 6.50407 6.71607 6.81297 7.39263 8.88889 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.006135 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.229153 B = 4563.099093 C = 4861.842100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C 0.189 3.811 4 H -0.020 1.020 5 C -0.497 4.497 6 H 0.038 0.962 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.915 3.085 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.228 1.228 13 N -0.506 5.506 14 C 0.036 3.964 15 C -0.101 4.101 16 C -0.086 4.086 17 H 0.070 0.930 18 C 0.054 3.946 19 N -0.686 5.686 20 C 0.053 3.947 21 C -0.092 4.092 22 H 0.071 0.929 23 C -0.103 4.103 24 C 0.064 3.936 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.348 0.652 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 1.137 -18.042 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.154 4.154 3 C 0.080 3.920 4 H -0.003 1.003 5 C -0.535 4.535 6 H 0.056 0.944 7 C -0.175 4.175 8 N -0.580 5.580 9 Si 0.740 3.260 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.151 1.151 13 N -0.230 5.230 14 C -0.091 4.091 15 C -0.139 4.139 16 C -0.105 4.105 17 H 0.089 0.911 18 C -0.075 4.075 19 N -0.316 5.316 20 C -0.076 4.076 21 C -0.111 4.111 22 H 0.090 0.910 23 C -0.140 4.140 24 C -0.065 4.065 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.165 0.835 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 0.209 0.954 -18.112 18.139 hybrid contribution 0.850 -0.021 1.619 1.829 sum 1.059 0.934 -16.493 16.554 Atomic orbital electron populations 1.21341 0.95015 0.99264 1.01522 1.21885 0.97699 0.96318 0.99493 1.19512 0.91112 0.92211 0.89128 1.00265 1.20985 1.28494 1.14127 0.89906 0.94384 1.25584 0.98787 0.97836 0.95274 1.70102 1.40958 1.48116 0.98801 0.86414 0.80421 0.80084 0.79106 1.20931 1.21313 1.15104 1.63014 1.56815 1.01645 1.01553 1.23124 0.96633 0.99423 0.89941 1.21538 0.98637 0.98021 0.95740 1.21760 0.98650 0.95006 0.95103 0.91131 1.22573 0.96853 0.89726 0.98372 1.62022 1.37065 1.03596 1.28892 1.22528 1.00022 0.96039 0.89011 1.22003 0.99349 0.95062 0.94686 0.91046 1.21188 1.00333 0.98667 0.93853 1.20905 0.95761 0.90806 0.99063 0.93513 0.95117 0.92113 0.92311 0.93952 0.92780 0.95024 0.90413 0.90988 0.90328 0.93728 0.89485 0.83523 0.93294 0.90579 0.90739 0.91895 0.93589 0.97983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.55 9.51 71.98 0.68 -3.87 16 2 C -0.12 -4.82 4.64 30.59 0.14 -4.68 16 3 C 0.19 8.65 1.24 44.17 0.05 8.70 16 4 H -0.02 -0.96 6.97 -2.38 -0.02 -0.97 16 5 C -0.50 -27.67 7.05 25.60 0.18 -27.49 16 6 H 0.04 2.39 6.92 -2.91 -0.02 2.37 16 7 C 0.02 1.33 5.32 84.65 0.45 1.78 16 8 N -0.94 -58.14 13.96 21.44 0.30 -57.84 16 9 Si 0.91 43.50 25.81 68.60 1.77 45.27 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.23 -9.83 5.38 99.48 0.53 -9.30 16 13 N -0.51 -19.82 3.61 -878.63 -3.17 -22.99 16 14 C 0.04 1.12 5.32 85.94 0.46 1.58 16 15 C -0.10 -2.52 4.64 30.39 0.14 -2.38 16 16 C -0.09 -1.94 2.61 -10.33 -0.03 -1.96 16 17 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 18 C 0.05 1.02 7.03 86.37 0.61 1.63 16 19 N -0.69 -13.15 7.42 -508.87 -3.77 -16.92 16 20 C 0.05 1.11 7.11 86.52 0.62 1.72 16 21 C -0.09 -2.26 3.11 -10.15 -0.03 -2.29 16 22 H 0.07 1.88 7.72 -2.39 -0.02 1.87 16 23 C -0.10 -3.01 4.52 29.52 0.13 -2.88 16 24 C 0.06 2.45 4.51 86.16 0.39 2.84 16 25 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.03 1.44 7.19 -2.39 -0.02 1.42 16 27 H 0.06 2.26 7.65 -2.39 -0.02 2.24 16 28 H 0.06 2.09 6.33 -2.39 -0.02 2.07 16 29 H 0.04 1.86 4.62 -2.39 -0.01 1.85 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.03 0.99 7.40 -2.39 -0.02 0.97 16 32 H 0.08 2.33 5.92 -2.39 -0.01 2.32 16 33 H 0.07 2.00 5.56 -2.38 -0.01 1.99 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 0.83 7.93 -2.39 -0.02 0.81 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.35 5.39 8.91 -89.69 -0.80 4.59 16 38 H 0.05 0.97 7.37 -2.39 -0.02 0.95 16 39 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 2.22 5.67 -2.39 -0.01 2.20 16 41 H 0.06 1.76 7.66 -2.38 -0.02 1.75 16 42 H 0.05 2.10 6.07 -2.39 -0.01 2.09 16 43 H 0.00 0.08 7.31 -2.39 -0.02 0.06 16 Total: -1.00 -62.64 303.26 -1.06 -63.70 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.02 Total: 16.08 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.80 Total: -27.29 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -6.65 Total: -97.76 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.77 Total: 45.27 kcal Total: -62.64 -1.06 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390816010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.379 kcal (2) G-P(sol) polarization free energy of solvation -62.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds