Wall clock time and date at job start Mon Mar 30 2020 04:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47470 * 2 1 4 4 H 1.09000 * 109.47147 * 306.72293 * 3 2 1 5 5 C 1.50694 * 109.47533 * 186.71925 * 3 2 1 6 6 H 1.07999 * 119.99992 * 276.07949 * 5 3 2 7 7 C 1.37869 * 120.00085 * 96.07550 * 5 3 2 8 8 N 1.31514 * 119.99920 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99960 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47166 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47245 * 299.99555 * 9 7 5 12 12 H 1.48495 * 109.47501 * 59.99970 * 9 7 5 13 13 N 1.46906 * 109.46774 * 66.71761 * 3 2 1 14 14 C 1.46808 * 110.99764 * 172.66015 * 13 3 2 15 15 C 1.49703 * 116.82943 * 181.36319 * 14 13 3 16 16 C 1.50343 * 107.26307 * 107.79248 * 15 14 13 17 17 H 1.09000 * 110.71794 * 59.33625 * 16 15 14 18 18 C 1.54793 * 117.76908 * 188.28375 * 16 15 14 19 19 N 1.49866 * 101.40172 * 162.52275 * 18 16 15 20 20 C 1.49395 * 107.93723 * 333.98243 * 19 18 16 21 21 C 1.52781 * 108.01659 * 297.61526 * 16 15 14 22 22 H 1.09000 * 104.01661 * 293.69050 * 21 16 15 23 23 C 1.47815 * 119.33150 * 50.37244 * 21 16 15 24 24 C 1.50927 * 110.99892 * 55.61408 * 13 3 2 25 25 H 1.09003 * 109.46752 * 54.83026 * 1 2 3 26 26 H 1.09002 * 109.47290 * 174.82869 * 1 2 3 27 27 H 1.08997 * 109.47062 * 294.83728 * 1 2 3 28 28 H 1.09000 * 109.47001 * 239.99904 * 2 1 3 29 29 H 1.08998 * 109.46881 * 120.00525 * 2 1 3 30 30 H 0.97003 * 119.99577 * 180.02562 * 8 7 5 31 31 H 1.09000 * 108.03176 * 303.09542 * 14 13 3 32 32 H 1.08998 * 108.03021 * 59.51598 * 14 13 3 33 33 H 1.09003 * 109.34276 * 348.53367 * 15 14 13 34 34 H 1.09005 * 110.11390 * 227.47987 * 15 14 13 35 35 H 1.08994 * 111.03494 * 280.55424 * 18 16 15 36 36 H 1.09003 * 111.04002 * 44.45549 * 18 16 15 37 37 H 1.00898 * 111.00155 * 95.28922 * 19 18 16 38 38 H 1.08996 * 110.27896 * 235.53788 * 20 19 18 39 39 H 1.09005 * 110.93017 * 112.51388 * 20 19 18 40 40 H 1.09002 * 109.79903 * 160.58195 * 23 21 16 41 41 H 1.09006 * 109.84238 * 39.75200 * 23 21 16 42 42 H 1.09002 * 109.53699 * 204.41896 * 24 13 3 43 43 H 1.09001 * 109.53849 * 324.58964 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5819 1.9899 -0.8237 5 6 3.5379 1.4457 -0.1662 6 1 4.1770 1.3116 0.6940 7 6 4.0923 1.6198 -1.4165 8 7 3.3141 1.7835 -2.4639 9 14 5.9489 1.6231 -1.6226 10 1 6.2877 1.8273 -3.0540 11 1 6.5348 2.7224 -0.8142 12 1 6.5003 0.3230 -1.1635 13 7 1.6872 2.0866 1.2723 14 6 2.3086 3.4122 1.3809 15 6 2.0595 4.1736 2.6456 16 6 3.3412 4.1649 3.4314 17 1 4.1468 4.6261 2.8601 18 6 3.3048 4.7183 4.8766 19 7 4.5694 4.1483 5.4439 20 6 4.8938 2.9029 4.6853 21 6 3.6749 2.7142 3.7752 22 1 2.8777 2.4140 4.4553 23 6 3.6713 1.6967 2.7030 24 6 2.2153 1.2952 2.4439 25 1 -0.3633 0.5920 -0.8401 26 1 -0.3634 -1.0235 -0.0926 27 1 -0.3633 0.4317 0.9326 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7043 1.9056 -3.3436 31 1 3.3861 3.2898 1.2713 32 1 1.9550 4.0199 0.5480 33 1 1.2703 3.6813 3.2139 34 1 1.7704 5.1990 2.4150 35 1 3.3310 5.8079 4.8791 36 1 2.4322 4.3488 5.4153 37 1 5.3269 4.8115 5.3768 38 1 4.9975 2.0603 5.3689 39 1 5.7996 3.0325 4.0929 40 1 4.2440 0.8249 3.0194 41 1 4.1063 2.1145 1.7950 42 1 1.6152 1.5089 3.3284 43 1 2.1643 0.2302 2.2172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390816012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:18 Heat of formation + Delta-G solvation = 37.361630 kcal Electronic energy + Delta-G solvation = -20564.056425 eV Core-core repulsion = 17838.062243 eV Total energy + Delta-G solvation = -2725.994182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38110 -37.21387 -33.76463 -32.06052 -31.75767 -30.46631 -27.53342 -26.91755 -25.48489 -23.51977 -22.53755 -21.02115 -20.06295 -19.86429 -18.30352 -16.82272 -15.87540 -15.55342 -14.88636 -14.68783 -14.29818 -13.86847 -13.12830 -12.88310 -12.64869 -12.53781 -12.40386 -11.87748 -11.82723 -11.52845 -11.43852 -11.34751 -11.18429 -10.97093 -10.88649 -10.59430 -10.51039 -10.06479 -10.00504 -9.73474 -9.61063 -9.51384 -9.30363 -8.56858 -8.43591 -8.39177 -7.15274 -6.04024 -4.14518 3.23063 3.29398 3.31383 4.23529 4.35337 4.69085 4.80349 5.14177 5.20011 5.34267 5.49094 5.62312 5.64924 5.73755 5.87155 5.95723 6.01337 6.07927 6.14489 6.25510 6.26414 6.30614 6.43169 6.50390 6.52302 6.53759 6.62478 6.74663 6.77310 6.82713 6.98736 7.00670 7.08604 7.23494 7.28732 7.38056 7.45236 7.71528 7.86994 8.16240 8.23698 8.46216 9.01186 9.52189 10.98439 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.008638 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.439433 B = 3240.537483 C = 4041.339811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.193 3.807 4 H 0.069 0.931 5 C -0.556 4.556 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.887 5.887 9 Si 0.880 3.120 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.276 1.276 13 N -0.505 5.505 14 C 0.039 3.961 15 C -0.096 4.096 16 C -0.119 4.119 17 H 0.071 0.929 18 C 0.052 3.948 19 N -0.689 5.689 20 C 0.048 3.952 21 C -0.105 4.105 22 H 0.052 0.948 23 C -0.157 4.157 24 C 0.040 3.960 25 H 0.044 0.956 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.332 0.668 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.122 0.878 42 H 0.052 0.948 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 3.157 10.326 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.086 3.914 4 H 0.087 0.913 5 C -0.594 4.594 6 H 0.093 0.907 7 C -0.132 4.132 8 N -0.524 5.524 9 Si 0.708 3.292 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.202 1.202 13 N -0.229 5.229 14 C -0.090 4.090 15 C -0.134 4.134 16 C -0.138 4.138 17 H 0.089 0.911 18 C -0.076 4.076 19 N -0.316 5.316 20 C -0.081 4.081 21 C -0.124 4.124 22 H 0.071 0.929 23 C -0.195 4.195 24 C -0.088 4.088 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.071 0.929 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.963 2.894 10.712 11.138 hybrid contribution 2.401 0.226 -1.175 2.683 sum 1.439 3.119 9.537 10.137 Atomic orbital electron populations 1.21732 0.98182 0.98670 1.01210 1.21719 0.93117 0.99562 1.00016 1.19594 0.93827 0.90693 0.87271 0.91264 1.22128 0.93131 1.50266 0.93895 0.90677 1.24985 0.97382 0.94521 0.96285 1.69908 1.34705 1.48729 0.99084 0.86850 0.86550 0.78616 0.77183 1.21269 1.20336 1.20187 1.65338 1.52495 1.01394 1.03674 1.21371 1.00461 0.91828 0.95360 1.20312 0.96183 0.99666 0.97279 1.22099 0.99329 0.96498 0.95898 0.91104 1.23169 0.93476 0.98114 0.92874 1.63047 1.05760 1.07424 1.55419 1.22742 0.97560 0.93006 0.94795 1.21107 0.97910 0.95745 0.97682 0.92945 1.21575 0.99970 0.97459 1.00471 1.23160 0.91741 0.99112 0.94757 0.93663 0.95428 0.93084 0.92683 0.93824 0.92812 0.92295 0.93198 0.91461 0.92367 0.91603 0.90278 0.85375 0.90877 0.93181 0.92735 0.86012 0.92947 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.76 37.16 0.36 -2.34 16 2 C -0.11 -2.32 5.21 -26.73 -0.14 -2.46 16 3 C 0.19 4.55 2.07 -68.86 -0.14 4.40 16 4 H 0.07 1.90 7.27 -51.93 -0.38 1.52 16 5 C -0.56 -13.96 6.15 -34.45 -0.21 -14.17 16 6 H 0.08 1.84 4.08 -52.49 -0.21 1.63 16 7 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 8 N -0.89 -24.78 12.77 55.43 0.71 -24.07 16 9 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.51 -10.40 5.06 -226.43 -1.14 -11.54 16 14 C 0.04 0.76 4.26 -5.51 -0.02 0.73 16 15 C -0.10 -1.51 5.37 -29.69 -0.16 -1.67 16 16 C -0.12 -1.73 2.39 -91.11 -0.22 -1.95 16 17 H 0.07 1.09 8.04 -51.93 -0.42 0.68 16 18 C 0.05 0.66 7.17 -1.22 -0.01 0.65 16 19 N -0.69 -8.84 7.54 -108.37 -0.82 -9.66 16 20 C 0.05 0.66 7.45 -2.29 -0.02 0.64 16 21 C -0.11 -1.61 1.74 -93.10 -0.16 -1.77 16 22 H 0.05 0.83 6.34 -51.93 -0.33 0.50 16 23 C -0.16 -2.78 4.27 -29.12 -0.12 -2.90 16 24 C 0.04 0.74 5.26 -1.43 -0.01 0.74 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 28 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.91 5.57 -51.93 -0.29 0.62 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.06 1.26 3.76 -51.93 -0.20 1.06 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.07 7.37 -51.93 -0.38 0.69 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 37 H 0.33 3.73 8.92 -39.29 -0.35 3.38 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.12 2.52 2.86 -51.93 -0.15 2.37 16 42 H 0.05 0.91 6.52 -51.93 -0.34 0.57 16 43 H 0.07 1.31 5.24 -51.93 -0.27 1.04 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -26.11 306.25 -9.69 -35.80 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.08 Total: 7.64 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.95 Total: -18.30 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.25 Total: -45.27 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.11 -9.69 -35.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390816012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.157 kcal (2) G-P(sol) polarization free energy of solvation -26.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds