Wall clock time and date at job start Mon Mar 30 2020 04:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47470 * 2 1 4 4 H 1.09000 * 109.47147 * 306.72293 * 3 2 1 5 5 C 1.50694 * 109.47533 * 186.71925 * 3 2 1 6 6 H 1.07999 * 119.99992 * 276.07949 * 5 3 2 7 7 C 1.37869 * 120.00085 * 96.07550 * 5 3 2 8 8 N 1.31514 * 119.99920 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99960 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47166 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47245 * 299.99555 * 9 7 5 12 12 H 1.48495 * 109.47501 * 59.99970 * 9 7 5 13 13 N 1.46906 * 109.46774 * 66.71761 * 3 2 1 14 14 C 1.46808 * 110.99764 * 172.66015 * 13 3 2 15 15 C 1.49703 * 116.82943 * 181.36319 * 14 13 3 16 16 C 1.50343 * 107.26307 * 107.79248 * 15 14 13 17 17 H 1.09000 * 110.71794 * 59.33625 * 16 15 14 18 18 C 1.54793 * 117.76908 * 188.28375 * 16 15 14 19 19 N 1.49866 * 101.40172 * 162.52275 * 18 16 15 20 20 C 1.49395 * 107.93723 * 333.98243 * 19 18 16 21 21 C 1.52781 * 108.01659 * 297.61526 * 16 15 14 22 22 H 1.09000 * 104.01661 * 293.69050 * 21 16 15 23 23 C 1.47815 * 119.33150 * 50.37244 * 21 16 15 24 24 C 1.50927 * 110.99892 * 55.61408 * 13 3 2 25 25 H 1.09003 * 109.46752 * 54.83026 * 1 2 3 26 26 H 1.09002 * 109.47290 * 174.82869 * 1 2 3 27 27 H 1.08997 * 109.47062 * 294.83728 * 1 2 3 28 28 H 1.09000 * 109.47001 * 239.99904 * 2 1 3 29 29 H 1.08998 * 109.46881 * 120.00525 * 2 1 3 30 30 H 0.97003 * 119.99577 * 180.02562 * 8 7 5 31 31 H 1.09000 * 108.03176 * 303.09542 * 14 13 3 32 32 H 1.08998 * 108.03021 * 59.51598 * 14 13 3 33 33 H 1.09003 * 109.34276 * 348.53367 * 15 14 13 34 34 H 1.09005 * 110.11390 * 227.47987 * 15 14 13 35 35 H 1.08994 * 111.03494 * 280.55424 * 18 16 15 36 36 H 1.09003 * 111.04002 * 44.45549 * 18 16 15 37 37 H 1.00898 * 111.00155 * 95.28922 * 19 18 16 38 38 H 1.08996 * 110.27896 * 235.53788 * 20 19 18 39 39 H 1.09005 * 110.93017 * 112.51388 * 20 19 18 40 40 H 1.09002 * 109.79903 * 160.58195 * 23 21 16 41 41 H 1.09006 * 109.84238 * 39.75200 * 23 21 16 42 42 H 1.09002 * 109.53699 * 204.41896 * 24 13 3 43 43 H 1.09001 * 109.53849 * 324.58964 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5819 1.9899 -0.8237 5 6 3.5379 1.4457 -0.1662 6 1 4.1770 1.3116 0.6940 7 6 4.0923 1.6198 -1.4165 8 7 3.3141 1.7835 -2.4639 9 14 5.9489 1.6231 -1.6226 10 1 6.2877 1.8273 -3.0540 11 1 6.5348 2.7224 -0.8142 12 1 6.5003 0.3230 -1.1635 13 7 1.6872 2.0866 1.2723 14 6 2.3086 3.4122 1.3809 15 6 2.0595 4.1736 2.6456 16 6 3.3412 4.1649 3.4314 17 1 4.1468 4.6261 2.8601 18 6 3.3048 4.7183 4.8766 19 7 4.5694 4.1483 5.4439 20 6 4.8938 2.9029 4.6853 21 6 3.6749 2.7142 3.7752 22 1 2.8777 2.4140 4.4553 23 6 3.6713 1.6967 2.7030 24 6 2.2153 1.2952 2.4439 25 1 -0.3633 0.5920 -0.8401 26 1 -0.3634 -1.0235 -0.0926 27 1 -0.3633 0.4317 0.9326 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7043 1.9056 -3.3436 31 1 3.3861 3.2898 1.2713 32 1 1.9550 4.0199 0.5480 33 1 1.2703 3.6813 3.2139 34 1 1.7704 5.1990 2.4150 35 1 3.3310 5.8079 4.8791 36 1 2.4322 4.3488 5.4153 37 1 5.3269 4.8115 5.3768 38 1 4.9975 2.0603 5.3689 39 1 5.7996 3.0325 4.0929 40 1 4.2440 0.8249 3.0194 41 1 4.1063 2.1145 1.7950 42 1 1.6152 1.5089 3.3284 43 1 2.1643 0.2302 2.2172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390816012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:18 Heat of formation + Delta-G solvation = 19.816169 kcal Electronic energy + Delta-G solvation = -20564.817254 eV Core-core repulsion = 17838.062243 eV Total energy + Delta-G solvation = -2726.755011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72409 -38.69739 -35.35226 -33.93033 -33.16562 -31.92295 -28.73461 -28.69958 -27.02670 -25.00028 -24.24923 -22.23131 -21.57804 -21.19494 -19.97608 -18.62993 -17.28793 -16.92070 -16.40625 -16.22136 -15.92644 -15.14527 -14.89581 -14.31111 -14.13494 -13.87198 -13.82305 -13.52467 -13.12253 -13.10236 -12.86902 -12.81836 -12.77916 -12.70403 -12.53689 -12.30702 -11.99897 -11.59439 -11.56344 -11.30956 -11.14768 -11.03597 -10.92333 -10.48961 -10.23667 -9.45400 -8.90588 -8.03863 -6.20845 1.35714 1.37473 1.43163 2.39531 3.14855 3.21060 3.38925 3.63200 3.77988 4.02083 4.23869 4.31757 4.40592 4.50417 4.59497 4.60442 4.64572 4.69717 4.78141 4.81234 4.86046 4.94669 4.98087 5.06884 5.12882 5.17153 5.23689 5.29502 5.34461 5.35238 5.43249 5.48763 5.58156 5.62102 5.67232 5.72921 5.86592 5.88998 6.26815 6.44958 6.47289 6.63325 7.04524 7.48463 8.95640 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.008638 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.439433 B = 3240.537483 C = 4041.339811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 C 0.198 3.802 4 H 0.024 0.976 5 C -0.550 4.550 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.925 5.925 9 Si 0.936 3.064 10 H -0.291 1.291 11 H -0.272 1.272 12 H -0.271 1.271 13 N -0.508 5.508 14 C 0.046 3.954 15 C -0.085 4.085 16 C -0.115 4.115 17 H 0.061 0.939 18 C 0.061 3.939 19 N -0.689 5.689 20 C 0.052 3.948 21 C -0.106 4.106 22 H 0.054 0.946 23 C -0.150 4.150 24 C 0.044 3.956 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.258 0.742 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.343 0.657 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 3.392 12.917 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C 0.090 3.910 4 H 0.042 0.958 5 C -0.589 4.589 6 H 0.102 0.898 7 C -0.181 4.181 8 N -0.565 5.565 9 Si 0.763 3.237 10 H -0.217 1.217 11 H -0.197 1.197 12 H -0.196 1.196 13 N -0.231 5.231 14 C -0.083 4.083 15 C -0.124 4.124 16 C -0.134 4.134 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.317 5.317 20 C -0.077 4.077 21 C -0.125 4.125 22 H 0.073 0.927 23 C -0.188 4.188 24 C -0.083 4.083 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.571 3.132 13.330 13.705 hybrid contribution 2.249 0.157 -1.947 2.978 sum 1.677 3.289 11.384 11.967 Atomic orbital electron populations 1.21605 0.95925 1.00086 1.01059 1.21590 0.95137 0.98045 0.99188 1.19360 0.92828 0.91309 0.87497 0.95779 1.22516 0.94236 1.48235 0.93921 0.89818 1.25685 1.01079 0.94971 0.96317 1.70055 1.36205 1.50884 0.99335 0.85946 0.82191 0.78808 0.76784 1.21678 1.19701 1.19580 1.65245 1.52721 1.02014 1.03121 1.21396 0.98978 0.91285 0.96637 1.20205 0.97114 0.99763 0.95285 1.22046 0.98045 0.96246 0.97089 0.92089 1.23154 0.93483 0.99340 0.90743 1.63042 1.06342 1.07419 1.54937 1.22683 0.96654 0.93794 0.94542 1.21011 0.99036 0.95506 0.96940 0.92731 1.21378 0.99074 0.98375 0.99960 1.23196 0.92613 0.98314 0.94194 0.95041 0.92949 0.92176 0.95456 0.92558 0.93263 0.94105 0.96147 0.90976 0.90874 0.89530 0.89945 0.84182 0.90379 0.93255 0.92148 0.89022 0.90996 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.76 71.98 0.70 -4.20 16 2 C -0.10 -4.48 5.21 30.60 0.16 -4.32 16 3 C 0.20 9.58 2.07 44.17 0.09 9.67 16 4 H 0.02 1.39 7.27 -2.39 -0.02 1.37 16 5 C -0.55 -28.22 6.15 25.60 0.16 -28.06 16 6 H 0.08 4.12 4.08 -2.91 -0.01 4.11 16 7 C 0.02 1.01 5.46 84.65 0.46 1.47 16 8 N -0.92 -53.80 12.77 21.44 0.27 -53.53 16 9 Si 0.94 42.87 29.54 68.60 2.03 44.90 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.51 -20.88 5.06 -870.28 -4.40 -25.28 16 14 C 0.05 1.81 4.26 85.26 0.36 2.18 16 15 C -0.09 -2.54 5.37 28.68 0.15 -2.39 16 16 C -0.11 -3.07 2.39 -11.11 -0.03 -3.10 16 17 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 18 C 0.06 1.32 7.17 86.33 0.62 1.94 16 19 N -0.69 -15.34 7.54 -496.77 -3.75 -19.09 16 20 C 0.05 1.30 7.45 85.91 0.64 1.94 16 21 C -0.11 -2.99 1.74 -12.40 -0.02 -3.01 16 22 H 0.05 1.54 6.34 -2.39 -0.02 1.53 16 23 C -0.15 -5.09 4.27 29.05 0.12 -4.97 16 24 C 0.04 1.57 5.26 85.59 0.45 2.02 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.06 2.32 5.57 -2.39 -0.01 2.31 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.04 1.77 3.76 -2.39 -0.01 1.76 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 2.11 7.37 -2.39 -0.02 2.09 16 34 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.77 7.98 -2.39 -0.02 1.75 16 37 H 0.34 6.54 8.92 -89.70 -0.80 5.74 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.09 3.75 2.86 -2.38 -0.01 3.75 16 42 H 0.07 2.30 6.52 -2.39 -0.02 2.28 16 43 H 0.06 2.30 5.24 -2.39 -0.01 2.29 16 Total: -1.00 -57.27 306.25 -1.77 -59.04 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.20 Total: 24.77 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 3.87 Total: -30.82 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -7.87 Total: -97.90 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -57.27 -1.77 -59.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390816012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.860 kcal (2) G-P(sol) polarization free energy of solvation -57.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds