Wall clock time and date at job start Mon Mar 30 2020 04:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 H 1.08997 * 109.47286 * 54.99550 * 3 2 1 5 5 C 1.50703 * 109.47108 * 175.00016 * 3 2 1 6 6 H 1.07994 * 120.00008 * 119.99899 * 5 3 2 7 7 C 1.37878 * 119.99630 * 299.99452 * 5 3 2 8 8 N 1.31512 * 120.00391 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47299 * 90.00556 * 9 7 5 11 11 H 1.48503 * 109.47397 * 210.00060 * 9 7 5 12 12 H 1.48502 * 109.47510 * 330.00269 * 9 7 5 13 13 N 1.46903 * 109.46816 * 294.99504 * 3 2 1 14 14 C 1.43625 * 111.00172 * 299.80311 * 13 3 2 15 15 C 1.50690 * 115.42568 * 175.23931 * 14 13 3 16 16 C 1.52031 * 112.08734 * 90.21682 * 15 14 13 17 17 H 1.09004 * 111.16025 * 37.45590 * 16 15 14 18 18 C 1.53832 * 109.16967 * 160.50899 * 16 15 14 19 19 N 1.47200 * 107.83751 * 117.93443 * 18 16 15 20 20 C 1.47595 * 107.67814 * 339.77154 * 19 18 16 21 21 C 1.53721 * 105.58697 * 30.09832 * 20 19 18 22 22 H 1.09002 * 109.19016 * 89.52148 * 21 20 19 23 23 C 1.51670 * 110.81047 * 210.37003 * 21 20 19 24 24 C 1.49938 * 110.99749 * 180.02562 * 13 3 2 25 25 H 1.08999 * 109.47472 * 300.00224 * 1 2 3 26 26 H 1.09003 * 109.47324 * 60.00225 * 1 2 3 27 27 H 1.09004 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46995 * 239.99572 * 2 1 3 29 29 H 1.09001 * 109.46924 * 120.00119 * 2 1 3 30 30 H 0.96994 * 120.00257 * 179.97438 * 8 7 5 31 31 H 1.09001 * 108.29175 * 296.78141 * 14 13 3 32 32 H 1.08995 * 108.29372 * 53.88764 * 14 13 3 33 33 H 1.09003 * 108.95922 * 210.88962 * 15 14 13 34 34 H 1.09001 * 108.95705 * 329.54886 * 15 14 13 35 35 H 1.09001 * 109.78596 * 237.52549 * 18 16 15 36 36 H 1.09004 * 109.78606 * 358.34408 * 18 16 15 37 37 H 1.00894 * 111.00285 * 101.45975 * 19 18 16 38 38 H 1.09000 * 110.22081 * 149.14485 * 20 19 18 39 39 H 1.08994 * 110.22468 * 270.99354 * 20 19 18 40 40 H 1.09002 * 109.16888 * 59.20763 * 23 21 20 41 41 H 1.09000 * 109.16832 * 299.94782 * 23 21 20 42 42 H 1.08998 * 110.10539 * 75.96339 * 24 13 3 43 43 H 1.08998 * 110.20514 * 314.34232 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8800 1.3812 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6514 2.0992 -1.2553 14 6 2.2115 1.4166 -2.3881 15 6 1.7848 1.9405 -3.7350 16 6 2.7161 3.0277 -4.2469 17 1 3.7527 2.8116 -3.9884 18 6 2.5396 3.1689 -5.7685 19 7 2.0531 4.5311 -6.0415 20 6 1.4649 5.0555 -4.7935 21 6 2.2430 4.3784 -3.6537 22 1 3.1087 4.9896 -3.3984 23 6 1.3638 4.2041 -2.4302 24 6 2.1356 3.5177 -1.2919 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 3.2977 1.4820 -2.3242 32 1 1.9297 0.3655 -2.3279 33 1 1.7760 1.1167 -4.4488 34 1 0.7767 2.3471 -3.6536 35 1 3.4960 3.0117 -6.2671 36 1 1.8126 2.4390 -6.1249 37 1 2.8022 5.1244 -6.3654 38 1 1.5889 6.1373 -4.7441 39 1 0.4081 4.7949 -4.7365 40 1 0.4992 3.5953 -2.6946 41 1 1.0225 5.1827 -2.0924 42 1 3.2061 3.5431 -1.4958 43 1 1.9234 4.0125 -0.3441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390816013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:21 Heat of formation + Delta-G solvation = 2.427661 kcal Electronic energy + Delta-G solvation = -20271.053769 eV Core-core repulsion = 17543.544737 eV Total energy + Delta-G solvation = -2727.509033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93292 -37.22509 -33.90179 -32.00992 -31.74324 -30.61885 -27.88882 -27.05659 -25.07112 -22.96177 -22.61879 -21.59357 -20.70131 -19.07223 -18.28766 -16.91484 -16.28251 -15.41583 -14.88104 -14.44341 -14.09857 -13.95656 -13.47134 -12.96565 -12.86341 -12.49758 -12.44087 -12.09909 -11.81223 -11.71102 -11.38372 -11.24372 -11.03742 -10.92401 -10.73311 -10.63386 -10.33399 -10.16941 -9.91496 -9.88108 -9.73011 -9.65411 -9.21818 -9.03804 -8.50967 -8.35734 -7.16777 -5.99341 -4.12709 3.24393 3.32073 3.34381 4.32471 4.38086 4.74893 4.79330 5.03385 5.22527 5.25326 5.27081 5.51362 5.57244 5.72422 5.79246 5.91021 5.99133 6.06786 6.09314 6.14665 6.24002 6.34682 6.38509 6.45224 6.47670 6.60018 6.66486 6.72555 6.78965 6.84843 6.91239 7.02435 7.12348 7.21586 7.34505 7.35088 7.62260 7.76596 8.02550 8.16387 8.30270 8.50934 8.98131 9.54751 10.99679 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.006784 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.441119 B = 4126.588449 C = 4654.710101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.210 3.790 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.515 5.515 14 C 0.052 3.948 15 C -0.110 4.110 16 C -0.109 4.109 17 H 0.075 0.925 18 C 0.050 3.950 19 N -0.682 5.682 20 C 0.051 3.949 21 C -0.112 4.112 22 H 0.060 0.940 23 C -0.110 4.110 24 C 0.057 3.943 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.261 0.739 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.332 0.668 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 5.804 -11.200 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.103 3.897 4 H 0.058 0.942 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.239 5.239 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.129 4.129 17 H 0.094 0.906 18 C -0.080 4.080 19 N -0.308 5.308 20 C -0.079 4.079 21 C -0.132 4.132 22 H 0.079 0.921 23 C -0.148 4.148 24 C -0.071 4.071 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.878 5.479 -11.379 13.211 hybrid contribution 2.977 0.099 0.867 3.103 sum -0.900 5.578 -10.512 11.935 Atomic orbital electron populations 1.21710 0.98801 0.98415 1.00628 1.21657 0.92314 0.99297 1.01995 1.19332 0.93040 0.91120 0.86177 0.94242 1.21737 0.92904 1.38007 1.05388 0.92655 1.24904 0.97691 0.95076 0.95747 1.69867 1.34732 1.38332 1.09429 0.86709 0.86376 0.77560 0.78024 1.20759 1.21163 1.20148 1.63536 1.55379 1.01362 1.03653 1.20943 0.97966 0.98659 0.90192 1.21242 0.99999 0.96827 0.96724 1.22327 0.99923 0.95928 0.94695 0.90612 1.22705 0.99228 0.91318 0.94706 1.61912 1.34818 1.03667 1.30376 1.22728 0.99730 0.98184 0.87220 1.22294 0.98634 0.95971 0.96320 0.92113 1.21662 0.99221 0.99963 0.94003 1.22678 0.96696 0.90907 0.96809 0.94157 0.93395 0.95627 0.94790 0.88967 0.92911 0.95209 0.91820 0.92839 0.90809 0.92430 0.90637 0.85299 0.91722 0.90566 0.90066 0.92938 0.94224 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.44 16 2 C -0.11 -2.69 5.02 -26.73 -0.13 -2.82 16 3 C 0.21 5.09 1.80 -68.86 -0.12 4.96 16 4 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.54 -14.27 7.20 -34.44 -0.25 -14.52 16 6 H 0.06 1.48 5.62 -52.49 -0.30 1.18 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.52 -10.56 4.09 -229.07 -0.94 -11.50 16 14 C 0.05 1.00 4.20 -6.72 -0.03 0.97 16 15 C -0.11 -1.70 4.51 -28.38 -0.13 -1.83 16 16 C -0.11 -1.52 3.11 -89.67 -0.28 -1.80 16 17 H 0.08 1.15 7.72 -51.93 -0.40 0.75 16 18 C 0.05 0.60 7.11 -3.23 -0.02 0.58 16 19 N -0.68 -7.93 7.42 -112.14 -0.83 -8.76 16 20 C 0.05 0.60 7.03 -3.07 -0.02 0.58 16 21 C -0.11 -1.51 2.61 -89.90 -0.23 -1.75 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 C -0.11 -1.66 4.64 -27.03 -0.13 -1.79 16 24 C 0.06 1.08 4.82 -1.75 -0.01 1.07 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.79 6.02 -51.93 -0.31 0.47 16 29 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.03 0.64 5.58 -51.93 -0.29 0.35 16 32 H 0.06 1.29 5.74 -51.93 -0.30 0.99 16 33 H 0.05 0.76 7.66 -51.93 -0.40 0.37 16 34 H 0.07 1.16 5.67 -51.93 -0.29 0.87 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.93 7.37 -51.93 -0.38 0.55 16 37 H 0.33 3.32 8.91 -39.29 -0.35 2.97 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 40 H 0.08 1.28 5.56 -51.93 -0.29 0.99 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.80 6.44 -51.93 -0.33 0.47 16 43 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -26.74 308.12 -9.89 -36.63 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.28 Total: 4.09 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.08 Total: -17.03 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -1.14 Total: -44.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.74 -9.89 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390816013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.059 kcal (2) G-P(sol) polarization free energy of solvation -26.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds