Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 H 1.08997 * 109.47286 * 54.99550 * 3 2 1 5 5 C 1.50703 * 109.47108 * 175.00016 * 3 2 1 6 6 H 1.07994 * 120.00008 * 119.99899 * 5 3 2 7 7 C 1.37878 * 119.99630 * 299.99452 * 5 3 2 8 8 N 1.31512 * 120.00391 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47299 * 90.00556 * 9 7 5 11 11 H 1.48503 * 109.47397 * 210.00060 * 9 7 5 12 12 H 1.48502 * 109.47510 * 330.00269 * 9 7 5 13 13 N 1.46903 * 109.46816 * 294.99504 * 3 2 1 14 14 C 1.43625 * 111.00172 * 299.80311 * 13 3 2 15 15 C 1.50690 * 115.42568 * 175.23931 * 14 13 3 16 16 C 1.52031 * 112.08734 * 90.21682 * 15 14 13 17 17 H 1.09004 * 111.16025 * 37.45590 * 16 15 14 18 18 C 1.53832 * 109.16967 * 160.50899 * 16 15 14 19 19 N 1.47200 * 107.83751 * 117.93443 * 18 16 15 20 20 C 1.47595 * 107.67814 * 339.77154 * 19 18 16 21 21 C 1.53721 * 105.58697 * 30.09832 * 20 19 18 22 22 H 1.09002 * 109.19016 * 89.52148 * 21 20 19 23 23 C 1.51670 * 110.81047 * 210.37003 * 21 20 19 24 24 C 1.49938 * 110.99749 * 180.02562 * 13 3 2 25 25 H 1.08999 * 109.47472 * 300.00224 * 1 2 3 26 26 H 1.09003 * 109.47324 * 60.00225 * 1 2 3 27 27 H 1.09004 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46995 * 239.99572 * 2 1 3 29 29 H 1.09001 * 109.46924 * 120.00119 * 2 1 3 30 30 H 0.96994 * 120.00257 * 179.97438 * 8 7 5 31 31 H 1.09001 * 108.29175 * 296.78141 * 14 13 3 32 32 H 1.08995 * 108.29372 * 53.88764 * 14 13 3 33 33 H 1.09003 * 108.95922 * 210.88962 * 15 14 13 34 34 H 1.09001 * 108.95705 * 329.54886 * 15 14 13 35 35 H 1.09001 * 109.78596 * 237.52549 * 18 16 15 36 36 H 1.09004 * 109.78606 * 358.34408 * 18 16 15 37 37 H 1.00894 * 111.00285 * 101.45975 * 19 18 16 38 38 H 1.09000 * 110.22081 * 149.14485 * 20 19 18 39 39 H 1.08994 * 110.22468 * 270.99354 * 20 19 18 40 40 H 1.09002 * 109.16888 * 59.20763 * 23 21 20 41 41 H 1.09000 * 109.16832 * 299.94782 * 23 21 20 42 42 H 1.08998 * 110.10539 * 75.96339 * 24 13 3 43 43 H 1.08998 * 110.20514 * 314.34232 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8800 1.3812 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6514 2.0992 -1.2553 14 6 2.2115 1.4166 -2.3881 15 6 1.7848 1.9405 -3.7350 16 6 2.7161 3.0277 -4.2469 17 1 3.7527 2.8116 -3.9884 18 6 2.5396 3.1689 -5.7685 19 7 2.0531 4.5311 -6.0415 20 6 1.4649 5.0555 -4.7935 21 6 2.2430 4.3784 -3.6537 22 1 3.1087 4.9896 -3.3984 23 6 1.3638 4.2041 -2.4302 24 6 2.1356 3.5177 -1.2919 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 3.2977 1.4820 -2.3242 32 1 1.9297 0.3655 -2.3279 33 1 1.7760 1.1167 -4.4488 34 1 0.7767 2.3471 -3.6536 35 1 3.4960 3.0117 -6.2671 36 1 1.8126 2.4390 -6.1249 37 1 2.8022 5.1244 -6.3654 38 1 1.5889 6.1373 -4.7441 39 1 0.4081 4.7949 -4.7365 40 1 0.4992 3.5953 -2.6946 41 1 1.0225 5.1827 -2.0924 42 1 3.2061 3.5431 -1.4958 43 1 1.9234 4.0125 -0.3441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390816013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = -14.864136 kcal Electronic energy + Delta-G solvation = -20271.803598 eV Core-core repulsion = 17543.544737 eV Total energy + Delta-G solvation = -2728.258861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19578 -38.73793 -35.52338 -33.73565 -33.15070 -32.14767 -29.10436 -28.76317 -26.69693 -24.65569 -24.04797 -22.67702 -22.20065 -20.86301 -19.50244 -18.49355 -17.67396 -17.18786 -16.34869 -16.03631 -15.64480 -15.25532 -14.97275 -14.54132 -14.22405 -13.93106 -13.79778 -13.55058 -13.34885 -13.21378 -12.94780 -12.83398 -12.65135 -12.51830 -12.30039 -12.09602 -12.03452 -11.63077 -11.58866 -11.42097 -11.32623 -10.98157 -10.88346 -10.84810 -10.41942 -9.45972 -8.98681 -8.04830 -6.27335 1.32876 1.35177 1.43351 2.37033 3.12957 3.37833 3.41273 3.66356 3.84791 4.05620 4.14825 4.29792 4.38699 4.53093 4.55158 4.61900 4.70527 4.73818 4.79529 4.81571 4.82402 4.89933 5.01035 5.05378 5.11355 5.15224 5.20406 5.29680 5.30768 5.37657 5.42461 5.43878 5.50237 5.62720 5.69725 5.79856 5.91723 6.08022 6.21621 6.37816 6.53538 6.68896 6.95830 7.43440 8.89976 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.006784 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.441119 B = 4126.588449 C = 4654.710101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.215 3.785 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.511 5.511 14 C 0.061 3.939 15 C -0.100 4.100 16 C -0.109 4.109 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.682 5.682 20 C 0.058 3.942 21 C -0.110 4.110 22 H 0.059 0.941 23 C -0.098 4.098 24 C 0.059 3.941 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.002 0.998 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.344 0.656 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.021 0.979 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 6.652 -13.195 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.107 3.893 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.069 4.069 15 C -0.138 4.138 16 C -0.129 4.129 17 H 0.078 0.922 18 C -0.073 4.073 19 N -0.309 5.309 20 C -0.071 4.071 21 C -0.130 4.130 22 H 0.077 0.923 23 C -0.136 4.136 24 C -0.070 4.070 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.039 0.961 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.122 6.341 -13.393 15.380 hybrid contribution 3.059 -0.157 1.507 3.413 sum -1.063 6.183 -11.886 13.440 Atomic orbital electron populations 1.21567 0.96151 0.99837 1.00749 1.21498 0.94644 0.98259 1.00348 1.19106 0.91754 0.91504 0.86903 0.97781 1.21949 0.94137 1.37585 1.05106 0.93515 1.25590 1.01616 0.94996 0.95623 1.69991 1.36180 1.38966 1.09797 0.85790 0.81700 0.77628 0.77908 1.20365 1.20696 1.19960 1.63512 1.55141 1.02096 1.02648 1.20941 0.96134 0.98184 0.91618 1.21149 1.00301 0.97905 0.94460 1.22291 0.98549 0.95607 0.96471 0.92235 1.22620 1.00053 0.91757 0.92864 1.61892 1.35378 1.03607 1.30020 1.22666 0.99182 0.99100 0.86174 1.22257 0.98554 0.95948 0.96278 0.92296 1.21522 0.98657 1.00253 0.93154 1.22699 0.96230 0.90137 0.97890 0.94787 0.92393 0.93547 0.94913 0.91992 0.92927 0.97980 0.93096 0.91283 0.90460 0.91082 0.90532 0.84032 0.89826 0.90720 0.90260 0.91079 0.96062 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.80 71.98 0.71 -4.35 16 2 C -0.11 -5.24 5.02 30.59 0.15 -5.09 16 3 C 0.21 10.77 1.80 44.17 0.08 10.85 16 4 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 5 C -0.55 -29.84 7.20 25.60 0.18 -29.66 16 6 H 0.05 2.58 5.62 -2.91 -0.02 2.56 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -52.19 11.29 21.45 0.24 -51.95 16 9 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.51 -21.26 4.09 -878.63 -3.60 -24.85 16 14 C 0.06 2.34 4.20 86.16 0.36 2.70 16 15 C -0.10 -2.95 4.51 29.53 0.13 -2.82 16 16 C -0.11 -2.87 3.11 -10.18 -0.03 -2.91 16 17 H 0.06 1.77 7.72 -2.39 -0.02 1.75 16 18 C 0.06 1.21 7.11 86.53 0.62 1.82 16 19 N -0.68 -13.55 7.42 -508.69 -3.77 -17.33 16 20 C 0.06 1.18 7.03 86.41 0.61 1.79 16 21 C -0.11 -2.75 2.61 -10.33 -0.03 -2.78 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 C -0.10 -2.80 4.64 30.40 0.14 -2.66 16 24 C 0.06 2.24 4.82 85.95 0.41 2.65 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 2.19 7.75 -2.39 -0.02 2.18 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.54 6.02 -2.39 -0.01 1.53 16 29 H 0.06 3.37 5.95 -2.39 -0.01 3.35 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.00 0.09 5.58 -2.39 -0.01 0.07 16 32 H 0.05 2.07 5.74 -2.39 -0.01 2.05 16 33 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 34 H 0.08 2.26 5.67 -2.39 -0.01 2.25 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.65 7.37 -2.38 -0.02 1.63 16 37 H 0.34 5.66 8.91 -89.70 -0.80 4.86 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.58 7.94 -2.39 -0.02 1.56 16 40 H 0.08 2.35 5.56 -2.39 -0.01 2.33 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.02 0.88 6.44 -2.39 -0.02 0.86 16 43 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 Total: -1.00 -58.42 308.12 -1.12 -59.54 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.19 Total: 17.48 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.79 Total: -28.80 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -7.13 Total: -94.13 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -58.42 -1.12 -59.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390816013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.677 kcal (2) G-P(sol) polarization free energy of solvation -58.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds