Wall clock time and date at job start Mon Mar 30 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47247 * 2 1 4 4 C 1.53006 * 109.47120 * 239.99907 * 2 1 3 5 5 C 1.50696 * 109.46939 * 60.00328 * 4 2 1 6 6 H 1.08009 * 120.00163 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00246 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99736 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00171 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47121 * 90.00155 * 9 7 5 11 11 H 1.48508 * 109.46889 * 210.00109 * 9 7 5 12 12 H 1.48504 * 109.47056 * 329.99870 * 9 7 5 13 13 C 1.52998 * 109.47249 * 120.00157 * 2 1 3 14 14 N 1.46896 * 109.47098 * 299.99800 * 13 2 1 15 15 C 1.46908 * 111.00040 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.46852 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.47158 * 180.02562 * 16 15 14 18 18 C 1.48221 * 111.00247 * 170.00122 * 17 16 15 19 19 C 1.51125 * 105.44007 * 144.85390 * 18 17 16 20 20 C 1.31118 * 109.36885 * 343.14410 * 19 18 17 21 21 C 1.48226 * 110.99914 * 283.64385 * 17 16 15 22 22 H 1.08999 * 109.47073 * 299.99829 * 1 2 3 23 23 H 1.09004 * 109.46927 * 60.00232 * 1 2 3 24 24 H 1.09005 * 109.46883 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47386 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47018 * 300.00117 * 3 2 1 27 27 H 1.08999 * 109.46945 * 60.00092 * 3 2 1 28 28 H 1.09002 * 109.47168 * 179.97438 * 4 2 1 29 29 H 1.08991 * 109.47238 * 299.99902 * 4 2 1 30 30 H 0.97001 * 120.00047 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.47318 * 179.97438 * 13 2 1 32 32 H 1.09005 * 109.47256 * 60.00134 * 13 2 1 33 33 H 1.00903 * 110.99695 * 56.04627 * 14 13 2 34 34 H 1.08997 * 109.46869 * 60.00065 * 15 14 13 35 35 H 1.08997 * 109.47315 * 300.00285 * 15 14 13 36 36 H 1.09005 * 109.47080 * 60.00529 * 16 15 14 37 37 H 1.08997 * 109.47390 * 300.00235 * 16 15 14 38 38 H 1.09002 * 110.26794 * 263.87454 * 18 17 16 39 39 H 1.09003 * 110.26777 * 25.83869 * 18 17 16 40 40 H 1.07997 * 125.26823 * 163.07536 * 19 18 17 41 41 H 1.07997 * 125.24482 * 179.97438 * 20 19 18 42 42 H 1.09000 * 110.27046 * 334.06789 * 21 17 16 43 43 H 1.09002 * 110.27137 * 96.03479 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6273 -1.5508 -3.8527 9 14 1.2480 0.3987 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0838 -0.5806 -6.3615 12 1 -0.0607 1.0352 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0210 -0.6953 3.6703 16 6 1.4914 0.0526 4.8955 17 7 1.9625 -0.6135 6.1172 18 6 1.6741 0.2094 7.3158 19 6 1.3498 -0.7779 8.4131 20 6 1.0787 -1.9454 7.8815 21 6 1.1919 -1.8527 6.3773 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7209 -1.2495 29 1 1.6767 -1.7489 -1.2493 30 1 2.8622 -1.8818 -4.7337 31 1 3.1301 -0.7217 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 0.5439 0.0413 2.4401 34 1 3.1108 -0.6955 3.6873 35 1 1.6572 -1.7227 3.6869 36 1 0.4015 0.0523 4.8783 37 1 1.8549 1.0800 4.8791 38 1 2.5485 0.8013 7.5866 39 1 0.8205 0.8611 7.1299 40 1 1.3438 -0.5558 9.4699 41 1 0.8137 -2.8350 8.4334 42 1 0.2014 -1.7829 5.9277 43 1 1.7245 -2.7184 5.9834 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392812002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:53 Heat of formation + Delta-G solvation = 17.611013 kcal Electronic energy + Delta-G solvation = -18534.836291 eV Core-core repulsion = 15807.985658 eV Total energy + Delta-G solvation = -2726.850633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68856 -37.64404 -34.90262 -32.67682 -31.75150 -28.70602 -27.87575 -26.76256 -26.30403 -24.78548 -22.87901 -21.89192 -21.14822 -19.59538 -17.83136 -16.66303 -16.21753 -15.78395 -15.46574 -14.82510 -14.28151 -13.94060 -13.71649 -13.51505 -13.14043 -12.85565 -12.62909 -12.50524 -12.14601 -11.98432 -11.83684 -11.55461 -11.33105 -11.17575 -10.92310 -10.79680 -10.73136 -10.47021 -10.23224 -10.09774 -9.78049 -9.65615 -8.99724 -8.80863 -8.55774 -8.29792 -8.07403 -5.94286 -3.94349 1.84475 3.34727 3.41136 3.43778 3.63858 4.36005 4.43032 4.50030 4.74060 4.97119 5.08039 5.20474 5.20917 5.30089 5.34588 5.41497 5.49539 5.64997 5.71261 5.75758 5.90474 5.97454 6.04090 6.05665 6.28175 6.31404 6.36685 6.53456 6.61856 6.68676 6.75432 6.81785 6.85375 7.23298 7.24937 7.28764 7.42256 7.68661 7.73640 7.88391 8.06192 8.50627 9.11083 9.68314 11.17449 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.060772 B = 0.003215 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.627498 B = 8706.926970 C = 8851.117304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.072 3.928 14 N -0.687 5.687 15 C 0.065 3.935 16 C 0.047 3.953 17 N -0.503 5.503 18 C 0.052 3.948 19 C -0.171 4.171 20 C -0.168 4.168 21 C 0.050 3.950 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.335 0.665 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 1.434 21.571 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.057 4.057 14 N -0.319 5.319 15 C -0.065 4.065 16 C -0.081 4.081 17 N -0.227 5.227 18 C -0.075 4.075 19 C -0.190 4.190 20 C -0.187 4.187 21 C -0.078 4.078 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.075 0.925 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.693 1.695 21.325 21.561 hybrid contribution -1.700 -0.362 -0.817 1.921 sum -4.393 1.333 20.508 21.015 Atomic orbital electron populations 1.21770 0.96144 1.00314 1.00375 1.20636 0.94685 0.96174 0.94427 1.21595 0.99813 0.95776 1.00115 1.19125 0.96150 0.94966 0.90169 1.21243 1.30738 1.11871 0.90619 0.92298 1.25021 0.95449 0.95112 0.99056 1.69968 1.37347 1.23196 1.23269 0.86663 0.79224 0.79417 0.83100 1.20772 1.21407 1.19961 1.22094 0.99866 0.94584 0.89109 1.60512 1.16090 1.53983 1.01322 1.21806 1.01242 0.94680 0.88745 1.22351 0.97374 0.99171 0.89247 1.65536 1.51210 1.04186 1.01808 1.22060 1.00648 0.95794 0.89004 1.23619 1.00775 0.95376 0.99198 1.23648 1.00703 0.98482 0.95843 1.22158 0.96907 0.95018 0.93709 0.94867 0.91705 0.94152 0.94144 0.92726 0.93917 0.96645 0.96930 0.93173 0.91476 0.95918 0.84598 0.90338 0.95825 0.94552 0.89639 0.89487 0.92485 0.84763 0.84825 0.92487 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.95 7.65 -34.44 -0.26 -14.22 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.27 4.65 -3.83 -0.02 1.26 16 14 N -0.69 -10.13 5.71 -113.78 -0.65 -10.78 16 15 C 0.07 0.84 5.82 -3.82 -0.02 0.82 16 16 C 0.05 0.52 4.92 -3.82 -0.02 0.51 16 17 N -0.50 -5.46 5.52 -234.68 -1.29 -6.76 16 18 C 0.05 0.48 6.62 -4.04 -0.03 0.45 16 19 C -0.17 -1.38 10.96 -35.85 -0.39 -1.77 16 20 C -0.17 -1.40 10.95 -35.85 -0.39 -1.79 16 21 C 0.05 0.48 6.08 -4.04 -0.02 0.46 16 22 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 23 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 27 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.34 4.70 6.77 -39.29 -0.27 4.43 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.31 7.75 -51.93 -0.40 -0.09 16 36 H 0.04 0.39 7.64 -51.93 -0.40 -0.01 16 37 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -29.54 335.39 -9.83 -39.37 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.79 Total: 0.20 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.87 Total: -17.47 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -1.21 Total: -43.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.54 -9.83 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392812002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.979 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds